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Search of human proteins with 239745954
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
(315 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 656 0.0
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 653 0.0
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 608 e-174
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 54 2e-07
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 54 2e-07
gi|48762934 alpha 2 type I collagen [Homo sapiens] 53 4e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 50 3e-06
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 50 3e-06
gi|239754370 PREDICTED: hypothetical protein [Homo sapiens] 49 4e-06
gi|239748924 PREDICTED: hypothetical protein [Homo sapiens] 49 4e-06
gi|239742946 PREDICTED: hypothetical protein [Homo sapiens] 49 4e-06
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 49 6e-06
gi|239749375 PREDICTED: hypothetical protein XP_002347018 [Homo ... 49 8e-06
gi|239743512 PREDICTED: hypothetical protein XP_002342879 [Homo ... 49 8e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 48 1e-05
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 48 1e-05
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 47 3e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 47 3e-05
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 47 3e-05
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 47 3e-05
gi|239756892 PREDICTED: hypothetical protein [Homo sapiens] 46 4e-05
gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo ... 46 4e-05
gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo ... 46 4e-05
gi|18079216 CASK interacting protein 1 [Homo sapiens] 46 5e-05
gi|239754838 PREDICTED: hypothetical protein [Homo sapiens] 46 5e-05
gi|115511036 alpha-kinase 3 [Homo sapiens] 45 6e-05
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 45 8e-05
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 45 8e-05
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 45 8e-05
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 656 bits (1692), Expect = 0.0
Identities = 315/315 (100%), Positives = 315/315 (100%)
Query: 1 MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS 60
MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS
Sbjct: 1 MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS 60
Query: 61 SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP 120
SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP
Sbjct: 61 SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP 120
Query: 121 ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVA 180
ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVA
Sbjct: 121 ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVA 180
Query: 181 PHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED 240
PHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED
Sbjct: 181 PHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED 240
Query: 241 LGSFLHSALAGCPVHAVEDITEEFIREEHEACGEGSLQQAGGQALEEAQGAFLLQHLLGT 300
LGSFLHSALAGCPVHAVEDITEEFIREEHEACGEGSLQQAGGQALEEAQGAFLLQHLLGT
Sbjct: 241 LGSFLHSALAGCPVHAVEDITEEFIREEHEACGEGSLQQAGGQALEEAQGAFLLQHLLGT 300
Query: 301 VHEALVSPYLGRGKG 315
VHEALVSPYLGRGKG
Sbjct: 301 VHEALVSPYLGRGKG 315
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 653 bits (1684), Expect = 0.0
Identities = 314/315 (99%), Positives = 314/315 (99%)
Query: 1 MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS 60
MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS
Sbjct: 1 MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS 60
Query: 61 SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP 120
SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP
Sbjct: 61 SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP 120
Query: 121 ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVA 180
ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVA
Sbjct: 121 ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVA 180
Query: 181 PHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED 240
PHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED
Sbjct: 181 PHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED 240
Query: 241 LGSFLHSALAGCPVHAVEDITEEFIREEHEACGEGSLQQAGGQALEEAQGAFLLQHLLGT 300
LGSFL SALAGCPVHAVEDITEEFIREEHEACGEGSLQQAGGQALEEAQGAFLLQHLLGT
Sbjct: 241 LGSFLRSALAGCPVHAVEDITEEFIREEHEACGEGSLQQAGGQALEEAQGAFLLQHLLGT 300
Query: 301 VHEALVSPYLGRGKG 315
VHEALVSPYLGRGKG
Sbjct: 301 VHEALVSPYLGRGKG 315
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 608 bits (1567), Expect = e-174
Identities = 292/294 (99%), Positives = 292/294 (99%)
Query: 1 MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS 60
MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS
Sbjct: 1 MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS 60
Query: 61 SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP 120
SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP
Sbjct: 61 SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP 120
Query: 121 ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVA 180
ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAG SILRVA
Sbjct: 121 ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGPSILRVA 180
Query: 181 PHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED 240
PHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED
Sbjct: 181 PHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED 240
Query: 241 LGSFLHSALAGCPVHAVEDITEEFIREEHEACGEGSLQQAGGQALEEAQGAFLL 294
LGSFL SALAGCPVHAVEDITEEFIREEHEACGEGSLQQAGGQALEEAQGAFLL
Sbjct: 241 LGSFLRSALAGCPVHAVEDITEEFIREEHEACGEGSLQQAGGQALEEAQGAFLL 294
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 53.9 bits (128), Expect = 2e-07
Identities = 83/264 (31%), Positives = 96/264 (36%), Gaps = 62/264 (23%)
Query: 6 VGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEV-APAGGSPLAVGGAFRVSSPRP 64
+ G A AA AGS L W G V A A GSPL +RVS+P P
Sbjct: 28 ISGRADEEGAAGAGSKL-------------WRRPRGAVSAGAPGSPL-----YRVSAPPP 69
Query: 65 FPPRPERP-----SRRHRAGC--GAH-GPGSRGRERRRGSRDPPAGPVARARARGRSAPG 116
PP P P S R RAG GA PG GR R AG + R A SA
Sbjct: 70 APPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRL-RCSAAALSAAQ 128
Query: 117 SAQPASGAAGPA----AAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPA 172
PA PA + A+PP P P S R G+ RV H GP
Sbjct: 129 RGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECAR-----RVPLHHGPP 183
Query: 173 GTSIL---------------RVAPHPALPG---AQVHWAG---RHRW--AARRGKSLQSA 209
G S + R P P + G V +G +HRW A +SL A
Sbjct: 184 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
Query: 210 WWGPGGR--RNSISPGRTTFPAPP 231
R R +PGR PP
Sbjct: 244 GGERPARALRRPRAPGRAGGGGPP 267
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 53.9 bits (128), Expect = 2e-07
Identities = 83/264 (31%), Positives = 96/264 (36%), Gaps = 62/264 (23%)
Query: 6 VGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEV-APAGGSPLAVGGAFRVSSPRP 64
+ G A AA AGS L W G V A A GSPL +RVS+P P
Sbjct: 28 ISGRADEEGAAGAGSKL-------------WRRPRGAVSAGAPGSPL-----YRVSAPPP 69
Query: 65 FPPRPERP-----SRRHRAGC--GAH-GPGSRGRERRRGSRDPPAGPVARARARGRSAPG 116
PP P P S R RAG GA PG GR R AG + R A SA
Sbjct: 70 APPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRL-RCSAAALSAAQ 128
Query: 117 SAQPASGAAGPA----AAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPA 172
PA PA + A+PP P P S R G+ RV H GP
Sbjct: 129 RGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGAECAR-----RVPLHHGPP 183
Query: 173 GTSIL---------------RVAPHPALPG---AQVHWAG---RHRW--AARRGKSLQSA 209
G S + R P P + G V +G +HRW A +SL A
Sbjct: 184 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 243
Query: 210 WWGPGGR--RNSISPGRTTFPAPP 231
R R +PGR PP
Sbjct: 244 GGERPARALRRPRAPGRAGGGGPP 267
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 52.8 bits (125), Expect = 4e-07
Identities = 74/261 (28%), Positives = 90/261 (34%), Gaps = 46/261 (17%)
Query: 2 GPACVGGDAGA--LSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRV 59
GP G+ GA L+ A + L LPG + PG V AG A G V
Sbjct: 292 GPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGI--PGPVGAAG----ATGARGLV 345
Query: 60 SSPRPFPPRPERPSRRHRAGCGAHGP-------GSRGRERRRGSRDPPAGPVARARARGR 112
P P + E ++ G GP G RG GS PP P R R
Sbjct: 346 GEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSR 405
Query: 113 SAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPA 172
PG A +G GP + A+ PA R N P P + GP
Sbjct: 406 GLPG-ADGRAGVMGPPGSRGASGPA-------GVRGPNGDAGRPGEPGLM-------GPR 450
Query: 173 GTSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAP-- 230
G P PG + AG+ G + GP G R PG FP P
Sbjct: 451 GL--------PGSPG-NIGPAGKEGPVGLPGIDGRPGPIGPAGARG--EPGNIGFPGPKG 499
Query: 231 PTQEAASREDLGSFLHSALAG 251
PT + D G H+ LAG
Sbjct: 500 PTGDPGKNGDKG---HAGLAG 517
Score = 42.0 bits (97), Expect = 7e-04
Identities = 66/249 (26%), Positives = 82/249 (32%), Gaps = 35/249 (14%)
Query: 1 MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS 60
+GP G+ G A +P P LL G + PG G G A V
Sbjct: 837 VGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERG----LPGVAGAVG 892
Query: 61 SPRPFPPRPERPSRRHRAGCGAHG----PGSRGRERRRGSRDPPAGPVARARARGRSAPG 116
P P +R G+ G PG GR+ G+ PP R PG
Sbjct: 893 EPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPG 952
Query: 117 SAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLG----SSPLHPVRLGRVRAHAGPA 172
+ P GAAG AP P + P+ K + G S P+ P R +GP
Sbjct: 953 NIGPV-GAAG-------APGPHGP--VGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQ 1002
Query: 173 GTSILRVAPHP----ALPGAQVH--WAGRHRWAARRGKSLQSAWWGPGGRRNSISP---- 222
G + P LPG + H G A G GP G R P
Sbjct: 1003 GIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPA 1062
Query: 223 ---GRTTFP 228
GRT P
Sbjct: 1063 GKDGRTGHP 1071
Score = 37.7 bits (86), Expect = 0.013
Identities = 37/139 (26%), Positives = 46/139 (33%), Gaps = 11/139 (7%)
Query: 1 MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAG-GSPLAVGGAFRV 59
MGP G +G P L+ G PG + PAG P+ + G
Sbjct: 417 MGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGI--D 474
Query: 60 SSPRPFPPRPERPSRRHRAGCGAHGP-------GSRGRERRRGSRDPPAGPVARARARGR 112
P P P R + G GP G +G G+R P GP A+G
Sbjct: 475 GRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAP-GPDGNNGAQGP 533
Query: 113 SAPGSAQPASGAAGPAAAP 131
P Q G GP P
Sbjct: 534 PGPQGVQGGKGEQGPPGPP 552
Score = 36.2 bits (82), Expect = 0.039
Identities = 65/238 (27%), Positives = 77/238 (32%), Gaps = 34/238 (14%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSS 61
G A + G GA + P P + G G PG P G L
Sbjct: 511 GHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPG---PPGFQGL---------- 557
Query: 62 PRPFPPRPE--RPSRRHRAGCGAHGP-GSRGRERRRGSRDPP-----AGPVARARARGRS 113
P P P E +P R G HG G G RG R PP AGP +RG S
Sbjct: 558 PGPSGPAGEVGKPGER-----GLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPS 612
Query: 114 APGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAG 173
P G G A A P+ P+ LP R + G +R G G
Sbjct: 613 GPPGPDGNKGEPGVVGAVGTAGPS-GPSGLPGERGAAGIPGGKGEKGEPG-LRGEIGNPG 670
Query: 174 TSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPP 231
R AP V G RG++ + GP G R S PA P
Sbjct: 671 RDGARGAP------GAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGP 722
Score = 34.7 bits (78), Expect = 0.11
Identities = 70/254 (27%), Positives = 84/254 (33%), Gaps = 27/254 (10%)
Query: 2 GPACVGGDAGAL----SAAPAGSSLNSPDPCQLLPGT-GWMMRPGEVAPAG-----GSPL 51
GP G AG S P+G PD + PG G + G P+G G+
Sbjct: 592 GPPGESGAAGPTGPIGSRGPSGPP--GPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAG 649
Query: 52 AVGGAFRVSSP--RPFPPRPERPSRRHRAGC-GAHGPGSRGRERRRGSRDPPAGPVARAR 108
GG P R P R R G GA GP +R PAGP
Sbjct: 650 IPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRG 709
Query: 109 ARG-RSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRA 167
+ G R G A P +G AGPA A + P + +G P PV
Sbjct: 710 SPGERGEVGPAGP-NGFAGPAGAAGQPGAKGERGAKGPKGENGVVG--PTGPVGAAGPAG 766
Query: 168 HAGPAGTSILRVAPHP----ALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPG 223
GP G + R P PGA AGR G S GP G+ P
Sbjct: 767 PNGPPGPAGSRGDGGPPGMTGFPGA----AGRTGPPGPSGISGPPGPPGPAGKEGLRGPR 822
Query: 224 RTTFPAPPTQEAAS 237
P T E +
Sbjct: 823 GDQGPVGRTGEVGA 836
Score = 32.3 bits (72), Expect = 0.56
Identities = 63/247 (25%), Positives = 82/247 (33%), Gaps = 24/247 (9%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGT-GWMMRPGEVAPAG--GSPLAVGGAFR 58
G V G+ GA P + + LPG G + PG G GS VG A
Sbjct: 193 GAPGVKGEPGA----PGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGP 248
Query: 59 VSSPRPFPPRPERPSRRHRAGC-GAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGS 117
+ S P P P P + G G GP R +GPV G +
Sbjct: 249 IGSAGP-PGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTG 307
Query: 118 AQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSIL 177
A+ A+G G A AP P P + + + G L AG G S
Sbjct: 308 AKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARG--------LVGEPGPAGSKGESGN 359
Query: 178 RVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSI-------SPGRTTFPAP 230
+ P A P +G G++ + GP G R S + GR P
Sbjct: 360 KGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGP 419
Query: 231 PTQEAAS 237
P AS
Sbjct: 420 PGSRGAS 426
Score = 31.2 bits (69), Expect = 1.3
Identities = 43/150 (28%), Positives = 51/150 (34%), Gaps = 17/150 (11%)
Query: 8 GDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGG-SPLAVGGAFRVSSPRPFP 66
G+ G + AA A P G G V PAG P G + + P
Sbjct: 952 GNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEP 1011
Query: 67 ----PRPERPSRRHRAGCGAHG-PGSRGRERRRGSRDP-----PAGPVARARARGRSA-P 115
PR + H G G G G + GS P PAGP A GR+ P
Sbjct: 1012 GEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHP 1071
Query: 116 GSAQPAS-----GAAGPAAAPEAAPPAWDP 140
G+ PA G GPA P P P
Sbjct: 1072 GTVGPAGIRGPQGHQGPAGPPGPPGPPGPP 1101
Score = 30.8 bits (68), Expect = 1.6
Identities = 47/148 (31%), Positives = 54/148 (36%), Gaps = 24/148 (16%)
Query: 2 GPACVGGDAGAL----SAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAG----GSPLAV 53
GPA G GA + P G + P + G G PAG G P +
Sbjct: 727 GPAGAAGQPGAKGERGAKGPKGEN-GVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGM 785
Query: 54 GGAFRVSSPRPFPPRPERPSRRHRAGCGAHGP-GSRGRERRRGSRDPPAGPVARARARGR 112
G F ++ R PP P S G GP G G+E RG R GPV R G
Sbjct: 786 TG-FPGAAGRTGPPGPSGIS-------GPPGPPGPAGKEGLRGPRGDQ-GPVGRTGEVGA 836
Query: 113 SAP----GSAQPASGAAGPAAAPEAAPP 136
P G P SG AG A P P
Sbjct: 837 VGPPGFAGEKGP-SGEAGTAGPPGTPGP 863
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 49.7 bits (117), Expect = 3e-06
Identities = 70/247 (28%), Positives = 83/247 (33%), Gaps = 24/247 (9%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLA--VGGAFRV 59
GP V G G + P P L G PG G +A G A
Sbjct: 452 GPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER 511
Query: 60 SSPRPFPPR--PERPSRRHRAGC-GAHG----PGSRGRERRRGSRDPPA-----GPVARA 107
SP P P+ P R AG GA G PGS G + + G P GP
Sbjct: 512 GSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPP 571
Query: 108 RARGRSAPGSAQPASGAAG-PAAAPEAAPPAWDPATLPPSRKRNSLGSS-PLHPVRLGRV 165
ARG++ GAAG P A E P P + P+ K G+ P P
Sbjct: 572 GARGQAGVMGFPGPKGAAGEPGKAGERGVPG-PPGAVGPAGKDGEAGAQGPPGPAGPAGE 630
Query: 166 RAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSIS-PGR 224
R GPAG+ + P PA P + G G GP G R PG
Sbjct: 631 RGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP------GPSGARGERGFPGE 684
Query: 225 TTFPAPP 231
PP
Sbjct: 685 RGVQGPP 691
Score = 45.1 bits (105), Expect = 8e-05
Identities = 86/280 (30%), Positives = 100/280 (35%), Gaps = 61/280 (21%)
Query: 1 MGPACVGGDAGALSA-APAGSSLNSPDPCQLLPGTGWMMRPGEVAPAG--GSPLAVG--G 55
MGP + G+ G A PAG+ N TG PG PAG G P AVG G
Sbjct: 301 MGPRGLPGERGRPGAPGPAGARGNDG-------ATGAAGPPGPTGPAGPPGFPGAVGAKG 353
Query: 56 AFRVSSPR-----------PFPPRPE-------RPSRRHRAGC-GAHG-PGSRGRERRRG 95
PR P PP P P + G GA+G PG G G
Sbjct: 354 EAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPG 413
Query: 96 SRDP--PAGPVARARARGRS----APGSA--QPASGAAGPAAAPEAAPPAWD-------- 139
+R P P GP +G S APGS A G GP PA +
Sbjct: 414 ARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARG 473
Query: 140 ---PATLP-PSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGR 195
P LP P +R GS AGP G + R +P PA P AGR
Sbjct: 474 EPGPTGLPGPPGERGGPGSR-----GFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR 528
Query: 196 HRWAARRG-KSLQSAWWGPG--GRRNSISP-GRTTFPAPP 231
A G K L + PG G+ P G+ P PP
Sbjct: 529 PGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPP 568
Score = 42.7 bits (99), Expect = 4e-04
Identities = 57/193 (29%), Positives = 66/193 (34%), Gaps = 34/193 (17%)
Query: 8 GDAGALSAA----PAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPR 63
GDAGA A PAG + P P + G G P G + G A RV P
Sbjct: 830 GDAGAKGDAGPPGPAGPA-GPPGPIGNVGAPGAKGARGSAGPPGATGFP-GAAGRVGPPG 887
Query: 64 PF----PPRPERPSRRHRAGCGAHGP-GSRGRERRRGSRDPPAGPVARARARGRSAPGSA 118
P PP P P+ + G GP G G R G PP P P
Sbjct: 888 PSGNAGPPGPPGPAGKE----GGKGPRGETGPAGRPGEVGPPGPP----------GPAGE 933
Query: 119 QPASGAAGPAAAPEAAPPAW-----DPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAG 173
+ + GA GPA AP P LP R P G+ GP+G
Sbjct: 934 KGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGK----QGPSG 989
Query: 174 TSILRVAPHPALP 186
S R P P P
Sbjct: 990 ASGERGPPGPMGP 1002
Score = 40.4 bits (93), Expect = 0.002
Identities = 66/243 (27%), Positives = 80/243 (32%), Gaps = 43/243 (17%)
Query: 8 GDAGALSA-----APAGSSLNSPDPCQLLPGTGWMMRPGEVAPAG--GSPLAVGGAFRVS 60
GDAGA A AP + LPG G+ P G GSP G ++
Sbjct: 710 GDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR--GDAGPKGADGSP-GKDGVRGLT 766
Query: 61 SPRPFPPRPERPSRRHRAG-------CGAHG-PGSRGRERRRGSRDPPAGPVARARARGR 112
P P P + +G GA G PG RG G P A + +
Sbjct: 767 GPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAK 826
Query: 113 SAPGSAQPASGAAGPAAAPEAAPPAWDPATL----PPSRKRNSLGSSPLHPVRLGRVRAH 168
PG A GA G A P A PA P + P K + P
Sbjct: 827 GEPGDA----GAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGR 882
Query: 169 AGPAGTSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFP 228
GP G S P P P AG+ RG++ GP GR + P P
Sbjct: 883 VGPPGPSGNAGPPGPPGP------AGKEGGKGPRGET------GPAGRPGEVGP-----P 925
Query: 229 APP 231
PP
Sbjct: 926 GPP 928
Score = 40.4 bits (93), Expect = 0.002
Identities = 73/289 (25%), Positives = 83/289 (28%), Gaps = 79/289 (27%)
Query: 3 PACVGGDAGALSAAPAGSSLNSPDPCQLLPG-----------TGWMMRPGEVAPAG---- 47
P G A P G S N+ P P TG RPGEV P G
Sbjct: 871 PGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGP 930
Query: 48 ----GSPLAVGGAFRVSSPRP--------------------FPPRPERPSRRHRAG-CGA 82
GSP A G A +P P FP P + G GA
Sbjct: 931 AGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA 990
Query: 83 HG----------------PGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAG 126
G PG GRE G+ P GR A+ G G
Sbjct: 991 SGERGPPGPMGPPGLAGPPGESGREGAPGAEGSP----------GRDGSPGAKGDRGETG 1040
Query: 127 PAAAPEAAPPAWDPATLPPSRKRNSLG----SSPLHPVRLGRVRAHAGPAGTSILRVAPH 182
PA P A P + P+ K G + P PV R AGP G
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG--------- 1091
Query: 183 PALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPP 231
P + G RG S GP G P + PA P
Sbjct: 1092 PRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGP 1140
Score = 38.9 bits (89), Expect = 0.006
Identities = 78/252 (30%), Positives = 91/252 (36%), Gaps = 71/252 (28%)
Query: 1 MGPACVGGDAGALS----AAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGA 56
+GPA G+AGA A PAG GE PAG SP G
Sbjct: 607 VGPAGKDGEAGAQGPPGPAGPAGER-------------------GEQGPAG-SP----GF 642
Query: 57 FRVSSPRPFPPRPERPSRRHRAG-CGAHGP----GSRGRERRRGSRDPPAGPVARARARG 111
+ P P +P + G GA GP G RG RG + PP GP A G
Sbjct: 643 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPP-GPAGPRGANG 701
Query: 112 RSAPGSAQPASGAAGPAAAP--------EAAPPAWDPATLP-PSRKRNSLG--SSPLHPV 160
APG+ A G AG AP + P A LP P R G + P
Sbjct: 702 --APGN-DGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPG 758
Query: 161 RLGRVRAHAGPAGTSILRVAPHPA-LPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNS 219
+ G VR GP G P PA PG +G+S S GP G R
Sbjct: 759 KDG-VRGLTGPIG------PPGPAGAPG-------------DKGESGPSGPAGPTGARG- 797
Query: 220 ISPGRTTFPAPP 231
+PG P PP
Sbjct: 798 -APGDRGEPGPP 808
Score = 35.4 bits (80), Expect = 0.066
Identities = 42/136 (30%), Positives = 49/136 (36%), Gaps = 23/136 (16%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAG-----GSPLAVGGA 56
GP+ G G P+G+S P G M PG P G G+P A G
Sbjct: 977 GPSGEPGKQG-----PSGASGERGPP-------GPMGPPGLAGPPGESGREGAPGAEGSP 1024
Query: 57 FRVSSPRPFPPRPERPSRRHRAGCGAHGP----GSRGRERRRGSRDP--PAGPVARARAR 110
R SP R E GA G G G+ RG P PAGPV AR
Sbjct: 1025 GRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGAR 1084
Query: 111 GRSAPGSAQPASGAAG 126
G + P + G G
Sbjct: 1085 GPAGPQGPRGDKGETG 1100
Score = 32.3 bits (72), Expect = 0.56
Identities = 41/177 (23%), Positives = 54/177 (30%), Gaps = 31/177 (17%)
Query: 8 GDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGG-SPLAVGGAFRVSSPR--- 63
G+ G A + +P P +G G PAG P+ G PR
Sbjct: 1037 GETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDK 1096
Query: 64 -PFPPRPERPSRRHRAGCGAHGP----------GSRGRERRRGSRDPPA----------- 101
+ +R + HR G GP G G G R PP
Sbjct: 1097 GETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLN 1156
Query: 102 ---GPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATL--PPSRKRNSLG 153
GP+ RGR+ G GP P +D + L PP K + G
Sbjct: 1157 GLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGG 1213
Score = 31.2 bits (69), Expect = 1.3
Identities = 73/267 (27%), Positives = 84/267 (31%), Gaps = 78/267 (29%)
Query: 34 TGWMMRPGEVAPAG-----GSPLAVG--------------GAFRVSSPR--PFPP----- 67
TG + PG + P+G G P A G GA PR P PP
Sbjct: 172 TGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGD 231
Query: 68 -----RPERPSRRHRAGC-GAHG-PGSRGRERRRGSRD-----------PPAGPVARARA 109
+P RP R G GA G PG+ G +G R PAGP +
Sbjct: 232 DGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGS 291
Query: 110 RG----------------RSAPGSAQPA-----SGAAGPAAAPEAAPPAWDP-------- 140
G R PG+ PA GA G A P PA P
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGA 351
Query: 141 -ATLPPSRKRNSLGSSPL--HPVRLGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHR 197
P R S G + P G A AGPAG P AG
Sbjct: 352 KGEAGPQGPRGSEGPQGVRGEPGPPGPAGA-AGPAGNPGADGQPGAKGANGAPGIAGAPG 410
Query: 198 WAARRGKS-LQSAWWGPGGRRNSISPG 223
+ RG S Q PG + NS PG
Sbjct: 411 FPGARGPSGPQGPGGPPGPKGNSGEPG 437
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 49.7 bits (117), Expect = 3e-06
Identities = 64/215 (29%), Positives = 76/215 (35%), Gaps = 46/215 (21%)
Query: 6 VGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGE------VAPAG--------GSPL 51
V G A AL A + ++ P+PC + G PGE V P G G+P
Sbjct: 1226 VSGLATALCQA-SFTTQPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPG 1284
Query: 52 AVG--GAFRVSSPRPFPPRPERPSRRHRAGC----GAHG-------PGSRGRERRRGSRD 98
G G+ R FP RP RAG GA G PG RG RG R
Sbjct: 1285 PQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRG 1344
Query: 99 PPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPAT-----LPPSRKRNSLG 153
P P A + G PG G GP+ P P DP LP + + G
Sbjct: 1345 PKGEPGAPGQVIGGEGPG-LPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKG 1403
Query: 154 SSPLHPVRLGRVRAHAGPAGTSILRVAP-HPALPG 187
R GP G +AP P LPG
Sbjct: 1404 D-----------RGERGPPGPGEGGIAPGEPGLPG 1427
Score = 35.0 bits (79), Expect = 0.087
Identities = 40/146 (27%), Positives = 50/146 (34%), Gaps = 18/146 (12%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVG-----GA 56
GPA GD G P G L+ PG P A G P G G
Sbjct: 1764 GPAGEKGDRG-----PPG--LDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGE 1816
Query: 57 FRVSSPRPFPPRPERPSRRHRAGC-GAHG-PGSRGRERRRGSRDPPAGPVARARARGRSA 114
+ P P P +P + G G +G PG G + R+G + G + GR
Sbjct: 1817 QGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEK----GDSGASGREGRDG 1872
Query: 115 PGSAQPASGAAGPAAAPEAAPPAWDP 140
P + A G GP P P P
Sbjct: 1873 PKGERGAPGILGPQGPPGLPGPVGPP 1898
Score = 34.3 bits (77), Expect = 0.15
Identities = 56/210 (26%), Positives = 65/210 (30%), Gaps = 31/210 (14%)
Query: 40 PGEVAPAG--GSPLAVGGAFRVSSPRP-FPPRPERPSRRHRAGC-GAHGP-------GSR 88
PG P G G P G P P +P P + G GA GP G
Sbjct: 1429 PGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPL 1488
Query: 89 GRERRRGSRDPPA--------GPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDP 140
G +G R PP G R A+G P G G P P P
Sbjct: 1489 GEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRP-GDPAVVGP 1547
Query: 141 ATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAA 200
A P ++ +G P P V+ GP G V P P G
Sbjct: 1548 AVAGPKGEKGDVG--PAGPRGATGVQGERGPPGL----VLPGDPGPKGDPGDRGPIGLTG 1601
Query: 201 RRGKSLQSAWWGPGGRRNSISPGRTTFPAP 230
R G S GP G + PGR P P
Sbjct: 1602 RAGPPGDS---GPPGEKG--DPGRPGPPGP 1626
Score = 32.3 bits (72), Expect = 0.56
Identities = 60/227 (26%), Positives = 66/227 (29%), Gaps = 57/227 (25%)
Query: 40 PGEVAPAG--GSPLAVGGAFRVSSP----RPFPPRPERPS--RRHRAGCGAHGP------ 85
PGE P G G P A G P R P P P R G GP
Sbjct: 1337 PGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGT 1396
Query: 86 ---GSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP-------------------ASG 123
G +G RG P G +A PGS P A G
Sbjct: 1397 AMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPG 1456
Query: 124 AAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHP 183
G +P P P + P R G PL R GPAG+
Sbjct: 1457 LPGQPGSPGEQGPRGPPGAIGPKGDRGFPG--PLGEAGEKGERGPPGPAGSR-------- 1506
Query: 184 ALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSI-SPGRTTFPA 229
LPG A R G GP GR+ PGR PA
Sbjct: 1507 GLPGV----------AGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPA 1543
Score = 32.3 bits (72), Expect = 0.56
Identities = 50/161 (31%), Positives = 56/161 (34%), Gaps = 33/161 (20%)
Query: 85 PGSRGRERRRG--SRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPA- 141
PG RG++ G AGP + +G P G GP AP A PA
Sbjct: 2143 PGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGP 2202
Query: 142 ---------TLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPH--PALPGAQV 190
T PP R + P V L GP G S L V P P LPG QV
Sbjct: 2203 SGLKGEPGETGPPGRGL----TGPTGAVGL------PGPPGPSGL-VGPQGSPGLPG-QV 2250
Query: 191 HWAGRHRWAARRGKSLQSAWWGPGGRRNSIS-PGRTTFPAP 230
G+ R G S G G R S PG P P
Sbjct: 2251 GETGKPGAPGRDGAS------GKDGDRGSPGVPGSPGLPGP 2285
Score = 31.6 bits (70), Expect = 0.96
Identities = 50/165 (30%), Positives = 57/165 (34%), Gaps = 29/165 (17%)
Query: 40 PGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDP 99
PGE GSP + G + P PP P P R G GA G G + G R P
Sbjct: 1678 PGEDG-RNGSPGSSGP--KGDRGEPGPPGP--PGRLVDTGPGAREKGEPGDRGQEGPRGP 1732
Query: 100 ------PAGPVARARARGRSAPGSAQPASGAAGPAAAP-EAAPPAWD--------PATLP 144
P P R R PG Q G GPA + PP D P
Sbjct: 1733 KGDPGLPGAPGERGIEGFRGPPG-PQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAG 1791
Query: 145 PSRKRNSLGSSPLHPVR--LGRVRAHAGPAGTSILRVAPHPALPG 187
PS + G + P R L +R G G S P LPG
Sbjct: 1792 PSGPNGAAGKAG-DPGRDGLPGLRGEQGLPGPS-----GPPGLPG 1830
Score = 30.8 bits (68), Expect = 1.6
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 7/110 (6%)
Query: 41 GEVAPAGGSPLAVG--GAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRD 98
G+ P G LA+G G S P +P P RAG G G GR RG R
Sbjct: 2009 GDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAG----GVGEAGRPGERGERG 2064
Query: 99 PPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRK 148
+ R PG+ P G GP + + P PP K
Sbjct: 2065 EKGERGEQGRDGPPGLPGTPGP-PGPPGPKVSVDEPGPGLSGEQGPPGLK 2113
>gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 49.3 bits (116), Expect = 4e-06
Identities = 66/235 (28%), Positives = 88/235 (37%), Gaps = 32/235 (13%)
Query: 16 APAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRR 75
AP + +P PC P +P A A A P P+++
Sbjct: 169 APCAPAWPAPPPCPAPPSRS---KPALAARQQPQRRAWAAAVATQCPH------RAPTQQ 219
Query: 76 HRAG--CGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEA 133
HRAG G+ G ++GR R+ +R P + R + R A S P + A+ AP+
Sbjct: 220 HRAGRESGSTGAINQGRRRKDAARRLPNRNLLRDLSLPRGAQSSPLPGARASSFLPAPQH 279
Query: 134 APPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAG-------TSILRVAPH---- 182
P D A +P S R S+P R RA AGPA S+ V H
Sbjct: 280 GAPL-DVAHVPDSGPR--AASAPARTPGHARTRAAAGPAAYLRGLMVASLAWVRRHAHTC 336
Query: 183 -PALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAA 236
P LP A + AG A R + GPGGR P PP + A
Sbjct: 337 PPPLPAASLA-AG-----AERARLNLPFIPGPGGRARPRWSFTAGAPEPPKRVPA 385
>gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 49.3 bits (116), Expect = 4e-06
Identities = 66/235 (28%), Positives = 88/235 (37%), Gaps = 32/235 (13%)
Query: 16 APAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRR 75
AP + +P PC P +P A A A P P+++
Sbjct: 169 APCAPAWPAPPPCPAPPSRS---KPALAARQQPQRRAWAAAVATQCPH------RAPTQQ 219
Query: 76 HRAG--CGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEA 133
HRAG G+ G ++GR R+ +R P + R + R A S P + A+ AP+
Sbjct: 220 HRAGRESGSTGAINQGRRRKDAARRLPNRNLLRDLSLPRGAQSSPLPGARASSFLPAPQH 279
Query: 134 APPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAG-------TSILRVAPH---- 182
P D A +P S R S+P R RA AGPA S+ V H
Sbjct: 280 GAPL-DVAHVPDSGPR--AASAPARTPGHARTRAAAGPAAYLRGLMVASLAWVRRHAHTC 336
Query: 183 -PALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAA 236
P LP A + AG A R + GPGGR P PP + A
Sbjct: 337 PPPLPAASLA-AG-----AERARLNLPFIPGPGGRARPRWSFTAGAPEPPKRVPA 385
>gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 49.3 bits (116), Expect = 4e-06
Identities = 66/235 (28%), Positives = 88/235 (37%), Gaps = 32/235 (13%)
Query: 16 APAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRR 75
AP + +P PC P +P A A A P P+++
Sbjct: 169 APCAPAWPAPPPCPAPPSRS---KPALAARQQPQRRAWAAAVATQCPH------RAPTQQ 219
Query: 76 HRAG--CGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEA 133
HRAG G+ G ++GR R+ +R P + R + R A S P + A+ AP+
Sbjct: 220 HRAGRESGSTGAINQGRRRKDAARRLPNRNLLRDLSLPRGAQSSPLPGARASSFLPAPQH 279
Query: 134 APPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAG-------TSILRVAPH---- 182
P D A +P S R S+P R RA AGPA S+ V H
Sbjct: 280 GAPL-DVAHVPDSGPR--AASAPARTPGHARTRAAAGPAAYLRGLMVASLAWVRRHAHTC 336
Query: 183 -PALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAA 236
P LP A + AG A R + GPGGR P PP + A
Sbjct: 337 PPPLPAASLA-AG-----AERARLNLPFIPGPGGRARPRWSFTAGAPEPPKRVPA 385
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 48.9 bits (115), Expect = 6e-06
Identities = 50/164 (30%), Positives = 57/164 (34%), Gaps = 23/164 (14%)
Query: 51 LAVGGAFRVSSPRPFPPRPERPSRRHRAGCG---------AHGPGSRGRERRRGSRDPPA 101
L GA R SP P S+ H G A GP +R R G R PA
Sbjct: 43 LGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARA-SRAAGRRAGPA 101
Query: 102 GPVARARARGRSAPGSAQPASGAA-----------GPAAAPEAAPPAWDPATLPPSRKRN 150
GP RA RGR+A PA G A G AA A + LPP
Sbjct: 102 GPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGT 161
Query: 151 SLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHPAL--PGAQVHW 192
SLG+ R G P+ + P P PGA W
Sbjct: 162 SLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTW 205
Score = 46.6 bits (109), Expect = 3e-05
Identities = 48/151 (31%), Positives = 56/151 (37%), Gaps = 18/151 (11%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMM---RPGEVAPAGGSPLAV---GG 55
GP A A PAG PC+ PG G R A GSP V GG
Sbjct: 85 GPPARASRAAGRRAGPAGP------PCRA-PGRGRAAATRRSPAPGTARGSPAGVERAGG 137
Query: 56 AFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRR-GSRDPPAGPVARARARGRSA 114
A SS P+RR CG G+ R RR GS P P + R
Sbjct: 138 ATAASSAGT----RSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPG 193
Query: 115 PGSAQPASGAAGPAAAPEAAPPAWDPATLPP 145
PG+ +P + P AAPPA + PP
Sbjct: 194 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPP 224
>gi|239749375 PREDICTED: hypothetical protein XP_002347018 [Homo
sapiens]
Length = 265
Score = 48.5 bits (114), Expect = 8e-06
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 26/124 (20%)
Query: 55 GAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSA 114
G FR +PR F RP +P + R G G++G+ RG +PPAG + G
Sbjct: 88 GPFR--APRIFAARPSQPLGQRRGG------GAKGQRGGRGPPNPPAGQ--GSDTGGTKT 137
Query: 115 PGSAQPASGAAGPAAAPEAAP-------PAWDPA------TLPPSRKR--NSLGSSPLHP 159
PG+ A+ AA +A+PEA P P + P+ +LPP R LGS P
Sbjct: 138 PGTTTAAAAAATGSASPEARPLVGSCRSPGYGPSLVSADLSLPPRRLAIPRQLGSGSA-P 196
Query: 160 VRLG 163
R+G
Sbjct: 197 SRIG 200
>gi|239743512 PREDICTED: hypothetical protein XP_002342879 [Homo
sapiens]
Length = 265
Score = 48.5 bits (114), Expect = 8e-06
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 26/124 (20%)
Query: 55 GAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSA 114
G FR +PR F RP +P + R G G++G+ RG +PPAG + G
Sbjct: 88 GPFR--APRIFAARPSQPLGQRRGG------GAKGQRGGRGPPNPPAGQ--GSDTGGTKT 137
Query: 115 PGSAQPASGAAGPAAAPEAAP-------PAWDPA------TLPPSRKR--NSLGSSPLHP 159
PG+ A+ AA +A+PEA P P + P+ +LPP R LGS P
Sbjct: 138 PGTTTAAAAAATGSASPEARPLVGSCRSPGYGPSLVSADLSLPPRRLAIPRQLGSGSA-P 196
Query: 160 VRLG 163
R+G
Sbjct: 197 SRIG 200
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 47.8 bits (112), Expect = 1e-05
Identities = 76/260 (29%), Positives = 92/260 (35%), Gaps = 34/260 (13%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPG-TGWMMRPGEVAPAGGSPLAVGGAFRVS 60
GP V G++G A P P Q LPG G PG G+P + G R
Sbjct: 972 GPQGVKGESGKPGANGLSGERGPPGP-QGLPGLAGTAGEPGR----DGNPGSDGLPGRDG 1026
Query: 61 SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP 120
SP R E S GA PG+ G G P GP ++ RG S P
Sbjct: 1027 SPGGKGDRGENGSP------GA--PGAPGHPGPPG----PVGPAGKSGDRGESGPAGPAG 1074
Query: 121 ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLG-----SSPLHPVRLGRVRAHAGPAGTS 175
A G AG AP P D + +R + G P +P G GPAG
Sbjct: 1075 APGPAGSRGAPGPQGPRGDKG---ETGERGAAGIKGHRGFPGNPGAPG----SPGPAGQQ 1127
Query: 176 ILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRR----NSISPGRTTFPAPP 231
+P PA P V +G G GP G R + SPG P PP
Sbjct: 1128 GAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPP 1187
Query: 232 TQEAASREDLGSFLHSALAG 251
A G +A+AG
Sbjct: 1188 GPPGAPGPCCGGVGAAAIAG 1207
Score = 43.5 bits (101), Expect = 2e-04
Identities = 73/244 (29%), Positives = 83/244 (34%), Gaps = 59/244 (24%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSS 61
GP GGD G P G P Q LPGTG PGE +
Sbjct: 621 GPTGPGGDKG--DTGPPG-----PQGLQGLPGTGGP--PGE------------------N 653
Query: 62 PRPFPPRPERPSRRHRAGCGAHG-PGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQP 120
+P P P + GA G PG +G G R PP G RG + P +
Sbjct: 654 GKPGEPGP-------KGDAGAPGAPGGKGDAGAPGERGPP-GLAGAPGLRGGAGPPGPEG 705
Query: 121 ASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGS--------SPLHPVRLGRVRAHAGPA 172
GAAGP P A A P +R LGS P P G V GP
Sbjct: 706 GKGAAGPPGPPGA---AGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADG-VPGKDGPR 761
Query: 173 GTSILRVAPHPA-LPGAQVHWA--GRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPA 229
G + P PA PG + G A RG PG R + PG FP
Sbjct: 762 GPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRG--------SPGERGETGPPGPAGFPG 813
Query: 230 PPTQ 233
P Q
Sbjct: 814 APGQ 817
Score = 37.4 bits (85), Expect = 0.017
Identities = 66/259 (25%), Positives = 80/259 (30%), Gaps = 36/259 (13%)
Query: 2 GPACVGGDAGALS-----AAPAGSSLNSPDPCQLLPGT----GWMMRPGEVAPAGGSPLA 52
GPA G++G P + P PG G+ R GE G L
Sbjct: 225 GPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLK 284
Query: 53 VGGAFRVSSPRPFPPRPE-RPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARG 111
+ P P P P R R G G+RG + RGS P P A
Sbjct: 285 GENGLPGENGAPGPMGPRGAPGERGRPGLPG-AAGARGNDGARGSDGQPGPPGPPGTAGF 343
Query: 112 RSAPGSAQPASGAAGPAAAP----------EAAPPAWDPATLPPSRKRNSLGSSPLHPVR 161
+PG A G GPA +P E P A PP + SP
Sbjct: 344 PGSPG----AKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPP--GINGSPGGKGE 397
Query: 162 LGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSIS 221
+G AG G L A P P G A GK+ GP G R
Sbjct: 398 MG----PAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGER---- 449
Query: 222 PGRTTFPAPPTQEAASRED 240
G P P + +D
Sbjct: 450 -GEAGIPGVPGAKGEDGKD 467
Score = 36.6 bits (83), Expect = 0.030
Identities = 50/168 (29%), Positives = 60/168 (35%), Gaps = 34/168 (20%)
Query: 33 GTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPE--RPSRRHRAGCGAHG-PGSRG 89
G G PGE G P V G S P PP P+ + R G GA G PG+RG
Sbjct: 823 GKGERGAPGEKGEGG--PPGVAGPPGGSGPAG-PPGPQGVKGERGSPGGPGAAGFPGARG 879
Query: 90 RERRRGS--------------RDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAP 135
GS +D P GP A G +PG + P A P + +P
Sbjct: 880 LPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPG--SPGVSGPKGDAGQP--GEKGSP 935
Query: 136 PAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHP 183
A P P PL + R AGP G R +P P
Sbjct: 936 GAQGPPGAP----------GPLGIAGITGARGLAGPPGMPGPRGSPGP 973
Score = 36.2 bits (82), Expect = 0.039
Identities = 68/281 (24%), Positives = 82/281 (29%), Gaps = 44/281 (15%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSS 61
GPA G+ GA A + P + G G PG G + S
Sbjct: 504 GPA---GERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGES 560
Query: 62 PRPFPPRPERPSRR--------------------HRAGCGAHGP-GSRGRERRRGSRDPP 100
RP PP P P + R G G GP G G+ G + PP
Sbjct: 561 GRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPP 620
Query: 101 AGPVARARARGRSAPGSAQPASGAAGPAAAP-------EAAPPAWDPATLPPSRKRNSLG 153
GP +G + P Q G G P E P A P K ++
Sbjct: 621 -GPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGA 679
Query: 154 SSPLHPVRLG---RVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAARRG------- 203
P L +R AGP G + A P P G RG
Sbjct: 680 PGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGP 739
Query: 204 KSLQSAWWGPG--GRRNSISPGRTTFPAPPTQEAASREDLG 242
K + GPG G P T P P A D G
Sbjct: 740 KGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKG 780
Score = 34.3 bits (77), Expect = 0.15
Identities = 67/272 (24%), Positives = 84/272 (30%), Gaps = 46/272 (16%)
Query: 13 LSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERP 72
++ +P G P PG P A A G+P GGA P + E
Sbjct: 388 INGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGA---GEPGKNGAKGEPG 444
Query: 73 SRRHRAGCGAHG-PGSRGRERRRGSRDPP--------------------AGPVARARARG 111
R R G G PG++G + + GS P AGP +G
Sbjct: 445 PRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKG 504
Query: 112 ----RSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRA 167
R APG A P A P + P +P S P P G
Sbjct: 505 PAGERGAPGPAGPRGAAGEPGR--DGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGE-SG 561
Query: 168 HAGPAGTSILRVAPH-PALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTT 226
GP G S R P PG + G + G+ GPGG PG+
Sbjct: 562 RPGPPGPSGPRGQPGVMGFPGPK----GNDGAPGKNGER-----GGPGGPGPQGPPGKNG 612
Query: 227 FPAP-----PTQEAASREDLGSFLHSALAGCP 253
P PT + D G L G P
Sbjct: 613 ETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLP 644
Score = 32.3 bits (72), Expect = 0.56
Identities = 41/143 (28%), Positives = 52/143 (36%), Gaps = 13/143 (9%)
Query: 100 PAGPVARARARGRSAPGSAQPASGAAGPAAAP-EAAP--PAWDPATLPPSRKRNSLGSSP 156
PAGP G S + + G GP P +A P P P + PS G S
Sbjct: 175 PAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG 234
Query: 157 LHPVRLGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGR 216
P R G R GP G I A P PG + G + R G+ ++ PG +
Sbjct: 235 -RPGRPGE-RGLPGPPG--IKGPAGIPGFPGMK----GHRGFDGRNGEKGETG--APGLK 284
Query: 217 RNSISPGRTTFPAPPTQEAASRE 239
+ PG P P A E
Sbjct: 285 GENGLPGENGAPGPMGPRGAPGE 307
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 47.8 bits (112), Expect = 1e-05
Identities = 47/152 (30%), Positives = 53/152 (34%), Gaps = 22/152 (14%)
Query: 42 EVAPAGGSPLAVGGAFR-VSSPRPFPPRP-ERPSRRH-------------RAGC------ 80
+V+ A +PL G R PRP PPRP E P RH RA C
Sbjct: 20 QVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPSPAAG 79
Query: 81 GAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGS-AQPASGAAGPAAAPEAAPPAWD 139
G GP + R+R A R R R PGS A PA G P PP
Sbjct: 80 GLRGPWTAAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAPGRDALRLPPPPPPPPER 139
Query: 140 PATLPPSRKRNSLGSSPLHPVRLGRVRAHAGP 171
P P S+P P R R P
Sbjct: 140 PRLPPAGLAGGPADSAPPSPAPAPRSRPAPRP 171
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 47.4 bits (111), Expect = 2e-05
Identities = 64/232 (27%), Positives = 78/232 (33%), Gaps = 31/232 (13%)
Query: 14 SAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERP- 72
S+A A +S + P P G++ P A A A PR P R
Sbjct: 41 SSAAAAASSSFPPP-------GFIHPPSSRAAVHSRLRAAPAAAPRLLPRVLAGAPARTG 93
Query: 73 ----SRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPA 128
SR A AH + RR R P P + R+R P
Sbjct: 94 ALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPLQPRSRHPHT----------RYPR 143
Query: 129 AAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHPALPGA 188
A PEA P P T P ++ R SSP P R R AGP R P P P
Sbjct: 144 AVPEATPLRPPPGTRPRAKSRPGCRSSPF-PAR-SRTPGEAGPP-----RGDPRPRAPRP 196
Query: 189 QVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED 240
H R A R SL G + + G T P PP A+R +
Sbjct: 197 GDH--PRRSPALRETPSLSPPSPGRRNGKRAAGKGTTPQPQPPPPPCATRRE 246
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 46.6 bits (109), Expect = 3e-05
Identities = 65/234 (27%), Positives = 80/234 (34%), Gaps = 44/234 (18%)
Query: 1 MGPACVGGDAGALS-AAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRV 59
MGP + G+ G A AG+ N P P PG V PAGG
Sbjct: 323 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-------PGPVGPAGG----------- 364
Query: 60 SSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGS-- 117
P P P + AG G+RG E +G R P P + A PG+
Sbjct: 365 ------PGFPGAPGAKGEAG----PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 414
Query: 118 ---AQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGT 174
A+ ++GA G A AP P P + PL P AG G
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGP--------QGATGPLGPKGQTGEPGIAGFKGE 466
Query: 175 SILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFP 228
+ P PA P AG RG+ GP G R +PG FP
Sbjct: 467 QGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERG--APGNRGFP 518
Score = 39.7 bits (91), Expect = 0.004
Identities = 63/241 (26%), Positives = 80/241 (33%), Gaps = 53/241 (21%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAG--GSPLAVGGAFRV 59
GPA G+ G A S +P PG PG P G G+ +G +
Sbjct: 402 GPAGASGNPGTDGIPGAKGSAGAPGIAGA-PGF-----PGPRGPPGPQGATGPLGPKGQT 455
Query: 60 SSPRPFPPRPERPSRRHRAGCGAHG-PGSRGRERRRGSRDPPAG--PVARARARGRSAPG 116
P + E+ + G G PG G E +RG+R P G P+ RG
Sbjct: 456 GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNR 515
Query: 117 SAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSI 176
G AGP AP P+ AGP G +
Sbjct: 516 GFPGQDGLAGPKGAPGERGPS-----------------------------GLAGPKGANG 546
Query: 177 LRVAP-HPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEA 235
P P LPGA+ GR A +GK GP G +PG P PP +
Sbjct: 547 DPGRPGEPGLPGAR-GLTGRPGDAGPQGKV------GPSG-----APGEDGRPGPPGPQG 594
Query: 236 A 236
A
Sbjct: 595 A 595
Score = 38.1 bits (87), Expect = 0.010
Identities = 36/86 (41%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 61 SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARG-RSAPGSAQ 119
SP P PR P R R G A G+RG + + G PP GPV A G APG
Sbjct: 319 SPGPMGPRG-LPGERGRTG-PAGAAGARGNDGQPGPAGPP-GPVGPAGGPGFPGAPG--- 372
Query: 120 PASGAAGPAAA--PEAAP-PAWDPAT 142
A G AGP A PE A P +P T
Sbjct: 373 -AKGEAGPTGARGPEGAQGPRGEPGT 397
Score = 37.7 bits (86), Expect = 0.013
Identities = 63/226 (27%), Positives = 70/226 (30%), Gaps = 18/226 (7%)
Query: 8 GDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPG-EVAPAGGSPLAVGGAFRVSSPRPFP 66
G+ G A A P P TG PG E +P P GA V R
Sbjct: 1002 GEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGET 1061
Query: 67 PRPERPSRRHRAGC-GAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAA 125
P G G GP + +R P GP A ARG P Q G
Sbjct: 1062 GAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGP---QGPRGDK 1118
Query: 126 GPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHPAL 185
G A P L R L P P G A +GPAG S R P P
Sbjct: 1119 GEAGEP-------GERGLKGHRGFTGLQGLPGPPGPSGDQGA-SGPAGPSGPRGPPGPVG 1170
Query: 186 PGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPP 231
P + G G +S GP G PG P PP
Sbjct: 1171 PSGKDGANGIPGPIGPPGPRGRSGETGPAG-----PPGNPGPPGPP 1211
Score = 37.4 bits (85), Expect = 0.017
Identities = 71/262 (27%), Positives = 86/262 (32%), Gaps = 40/262 (15%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSS 61
G A GDAGA P G S +P P TG G P G + G A RV
Sbjct: 852 GEAGQKGDAGA--PGPQGPS-GAPGPQGPTGVTGPKGARGAQGPPGATGFP-GAAGRVGP 907
Query: 62 P----RPFPPRPERPSRRHRAGCGAHG----PGSRGRERRRGSRDPPA--GPVARARARG 111
P P PP P PS + GA G PG G +G PP G G
Sbjct: 908 PGSNGNPGPPGPPGPSGKD-GPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSG 966
Query: 112 RSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGS----------SPLHPVR 161
P Q +G G P P PS + G+ P+ P
Sbjct: 967 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 1026
Query: 162 LGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSIS 221
L GPAG +P P + AG + + A PG S
Sbjct: 1027 L------TGPAGEPGREGSPGADGPPGRDGAAG-----VKGDRGETGAVGAPGAPGPPGS 1075
Query: 222 PGRTTFPAPPTQEAASREDLGS 243
PG PA PT + R + G+
Sbjct: 1076 PG----PAGPTGKQGDRGEAGA 1093
Score = 37.4 bits (85), Expect = 0.017
Identities = 52/189 (27%), Positives = 60/189 (31%), Gaps = 23/189 (12%)
Query: 8 GDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGS-PLAVGGAFRVSSPRPFP 66
G+ GA+ A A SP P G G P G S P G PR
Sbjct: 1059 GETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDK 1118
Query: 67 PRPERPSRR----HRAGCGAHG----PGSRGRERRRGSRDP-----PAGPVARARARGRS 113
P R HR G G PG G + G P P GPV + G +
Sbjct: 1119 GEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGAN 1178
Query: 114 A-PGSAQPA-----SGAAGPAAAPEAAPPAWDPATLPPSRKRNS---LGSSPLHPVRLGR 164
PG P SG GPA P P P P ++ LG P L
Sbjct: 1179 GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQY 1238
Query: 165 VRAHAGPAG 173
+RA G
Sbjct: 1239 MRADQAAGG 1247
Score = 36.2 bits (82), Expect = 0.039
Identities = 57/233 (24%), Positives = 70/233 (30%), Gaps = 23/233 (9%)
Query: 16 APAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRR 75
+P L P + LPGT P + G P A G P +
Sbjct: 709 SPGAQGLQGP---RGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKG 765
Query: 76 HRAGCGAHGP-GSRGRERRRGSRDP--PAGPVARARARGRSAPGSAQPASGAAG-PAAAP 131
R G GP G+ G++ RG P P GP +G P ++GA G P
Sbjct: 766 DRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERG 825
Query: 132 EAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHP----ALPG 187
E PP PP + G AG AP P PG
Sbjct: 826 ETGPPGPAGFAGPPGADGQP------------GAKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 188 AQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED 240
Q AR + A PG PG P PP S +D
Sbjct: 874 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKD 926
Score = 33.9 bits (76), Expect = 0.19
Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 35/155 (22%)
Query: 2 GPACVGGDAGALS-AAPAGSSLNSPDPCQL-LPGT-GWMMRPGEVAPAGG-SPLAVGGAF 57
GP G+ G A P G++ + P + LPG G RPG+ P G P G
Sbjct: 525 GPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPG-- 582
Query: 58 RVSSPRPFPPRPERPSRRHRAGC-------GAHG-------------PGSRG---RERRR 94
RP PP P+ R + G GA+G PG RG ++
Sbjct: 583 --EDGRPGPPGPQ--GARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGET 638
Query: 95 GSRDPP--AGPVARARARGRSAPGSAQPASGAAGP 127
G+ PP AGP +G P Q G GP
Sbjct: 639 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 673
Score = 33.9 bits (76), Expect = 0.19
Identities = 51/180 (28%), Positives = 59/180 (32%), Gaps = 38/180 (21%)
Query: 1 MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS 60
+GP G AGA A P P G+ PG A G P A G
Sbjct: 806 VGPPGPAGSAGARGAPGERGETGPPGPA------GFAGPPG----ADGQPGAKG------ 849
Query: 61 SPRPFPPRPERPSRRHRAGCGAHGP-GSRGRERRRGSRDPPAGPVARARARGRSAPGSAQ 119
E+ + GA GP G G +G P G ARG P A
Sbjct: 850 ---------EQGEAGQKGDAGAPGPQGPSGAPGPQG----PTGVTGPKGARGAQGPPGAT 896
Query: 120 PASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLG----SSPLHPVRLGR--VRAHAGPAG 173
GAAG P + P PS K G S P P R G ++ AGP G
Sbjct: 897 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP--PGRAGEPGLQGPAGPPG 954
Score = 29.3 bits (64), Expect = 4.8
Identities = 54/207 (26%), Positives = 67/207 (32%), Gaps = 44/207 (21%)
Query: 62 PRPFPPRPERPSRRHRAGCGAHG-PGSRGRERRRGSRD---------PPAGPVARARARG 111
P P P E+ R R G G PG RGR+ G+ PP P
Sbjct: 122 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 181
Query: 112 RSAPGSAQPASGA-----------------AGPAAAP-----EAAP-PAWDPATLPPSRK 148
+ A G + A GA GPA AP + P +P P
Sbjct: 182 QMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGP 241
Query: 149 RNSLG--SSPLHPVRLGR--VRAHAGPAGTSILRVAP-HPALPGAQVHWAGRHRWAARRG 203
R G P G+ GP G R P P LPG + H G +G
Sbjct: 242 RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGH-RGYPGLDGAKG 300
Query: 204 KSLQSAWWGPGGRRNSISPGRTTFPAP 230
++ PG + S SPG P P
Sbjct: 301 EA-----GAPGVKGESGSPGENGSPGP 322
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 46.6 bits (109), Expect = 3e-05
Identities = 65/234 (27%), Positives = 80/234 (34%), Gaps = 44/234 (18%)
Query: 1 MGPACVGGDAGALS-AAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRV 59
MGP + G+ G A AG+ N P P PG V PAGG
Sbjct: 254 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-------PGPVGPAGG----------- 295
Query: 60 SSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGS-- 117
P P P + AG G+RG E +G R P P + A PG+
Sbjct: 296 ------PGFPGAPGAKGEAG----PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 345
Query: 118 ---AQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGT 174
A+ ++GA G A AP P P + PL P AG G
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGP--------QGATGPLGPKGQTGEPGIAGFKGE 397
Query: 175 SILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFP 228
+ P PA P AG RG+ GP G R +PG FP
Sbjct: 398 QGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERG--APGNRGFP 449
Score = 39.7 bits (91), Expect = 0.004
Identities = 63/241 (26%), Positives = 80/241 (33%), Gaps = 53/241 (21%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAG--GSPLAVGGAFRV 59
GPA G+ G A S +P PG PG P G G+ +G +
Sbjct: 333 GPAGASGNPGTDGIPGAKGSAGAPGIAGA-PGF-----PGPRGPPGPQGATGPLGPKGQT 386
Query: 60 SSPRPFPPRPERPSRRHRAGCGAHG-PGSRGRERRRGSRDPPAG--PVARARARGRSAPG 116
P + E+ + G G PG G E +RG+R P G P+ RG
Sbjct: 387 GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNR 446
Query: 117 SAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSI 176
G AGP AP P+ AGP G +
Sbjct: 447 GFPGQDGLAGPKGAPGERGPS-----------------------------GLAGPKGANG 477
Query: 177 LRVAP-HPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEA 235
P P LPGA+ GR A +GK GP G +PG P PP +
Sbjct: 478 DPGRPGEPGLPGAR-GLTGRPGDAGPQGKV------GPSG-----APGEDGRPGPPGPQG 525
Query: 236 A 236
A
Sbjct: 526 A 526
Score = 38.1 bits (87), Expect = 0.010
Identities = 36/86 (41%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 61 SPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARG-RSAPGSAQ 119
SP P PR P R R G A G+RG + + G PP GPV A G APG
Sbjct: 250 SPGPMGPRG-LPGERGRTG-PAGAAGARGNDGQPGPAGPP-GPVGPAGGPGFPGAPG--- 303
Query: 120 PASGAAGPAAA--PEAAP-PAWDPAT 142
A G AGP A PE A P +P T
Sbjct: 304 -AKGEAGPTGARGPEGAQGPRGEPGT 328
Score = 37.7 bits (86), Expect = 0.013
Identities = 63/226 (27%), Positives = 70/226 (30%), Gaps = 18/226 (7%)
Query: 8 GDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPG-EVAPAGGSPLAVGGAFRVSSPRPFP 66
G+ G A A P P TG PG E +P P GA V R
Sbjct: 933 GEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGET 992
Query: 67 PRPERPSRRHRAGC-GAHGPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAA 125
P G G GP + +R P GP A ARG P Q G
Sbjct: 993 GAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGP---QGPRGDK 1049
Query: 126 GPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHPAL 185
G A P L R L P P G A +GPAG S R P P
Sbjct: 1050 GEAGEP-------GERGLKGHRGFTGLQGLPGPPGPSGDQGA-SGPAGPSGPRGPPGPVG 1101
Query: 186 PGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPP 231
P + G G +S GP G PG P PP
Sbjct: 1102 PSGKDGANGIPGPIGPPGPRGRSGETGPAG-----PPGNPGPPGPP 1142
Score = 37.4 bits (85), Expect = 0.017
Identities = 71/262 (27%), Positives = 86/262 (32%), Gaps = 40/262 (15%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSS 61
G A GDAGA P G S +P P TG G P G + G A RV
Sbjct: 783 GEAGQKGDAGA--PGPQGPS-GAPGPQGPTGVTGPKGARGAQGPPGATGFP-GAAGRVGP 838
Query: 62 P----RPFPPRPERPSRRHRAGCGAHG----PGSRGRERRRGSRDPPA--GPVARARARG 111
P P PP P PS + GA G PG G +G PP G G
Sbjct: 839 PGSNGNPGPPGPPGPSGKD-GPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSG 897
Query: 112 RSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGS----------SPLHPVR 161
P Q +G G P P PS + G+ P+ P
Sbjct: 898 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 957
Query: 162 LGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSIS 221
L GPAG +P P + AG + + A PG S
Sbjct: 958 L------TGPAGEPGREGSPGADGPPGRDGAAG-----VKGDRGETGAVGAPGAPGPPGS 1006
Query: 222 PGRTTFPAPPTQEAASREDLGS 243
PG PA PT + R + G+
Sbjct: 1007 PG----PAGPTGKQGDRGEAGA 1024
Score = 37.4 bits (85), Expect = 0.017
Identities = 52/189 (27%), Positives = 60/189 (31%), Gaps = 23/189 (12%)
Query: 8 GDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGS-PLAVGGAFRVSSPRPFP 66
G+ GA+ A A SP P G G P G S P G PR
Sbjct: 990 GETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDK 1049
Query: 67 PRPERPSRR----HRAGCGAHG----PGSRGRERRRGSRDP-----PAGPVARARARGRS 113
P R HR G G PG G + G P P GPV + G +
Sbjct: 1050 GEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGAN 1109
Query: 114 A-PGSAQPA-----SGAAGPAAAPEAAPPAWDPATLPPSRKRNS---LGSSPLHPVRLGR 164
PG P SG GPA P P P P ++ LG P L
Sbjct: 1110 GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQY 1169
Query: 165 VRAHAGPAG 173
+RA G
Sbjct: 1170 MRADQAAGG 1178
Score = 36.2 bits (82), Expect = 0.039
Identities = 57/233 (24%), Positives = 70/233 (30%), Gaps = 23/233 (9%)
Query: 16 APAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRR 75
+P L P + LPGT P + G P A G P +
Sbjct: 640 SPGAQGLQGP---RGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKG 696
Query: 76 HRAGCGAHGP-GSRGRERRRGSRDP--PAGPVARARARGRSAPGSAQPASGAAG-PAAAP 131
R G GP G+ G++ RG P P GP +G P ++GA G P
Sbjct: 697 DRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERG 756
Query: 132 EAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGPAGTSILRVAPHP----ALPG 187
E PP PP + G AG AP P PG
Sbjct: 757 ETGPPGPAGFAGPPGADGQP------------GAKGEQGEAGQKGDAGAPGPQGPSGAPG 804
Query: 188 AQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASRED 240
Q AR + A PG PG P PP S +D
Sbjct: 805 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKD 857
Score = 33.9 bits (76), Expect = 0.19
Identities = 45/155 (29%), Positives = 58/155 (37%), Gaps = 35/155 (22%)
Query: 2 GPACVGGDAGALS-AAPAGSSLNSPDPCQL-LPGT-GWMMRPGEVAPAGG-SPLAVGGAF 57
GP G+ G A P G++ + P + LPG G RPG+ P G P G
Sbjct: 456 GPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPG-- 513
Query: 58 RVSSPRPFPPRPERPSRRHRAGC-------GAHG-------------PGSRG---RERRR 94
RP PP P+ R + G GA+G PG RG ++
Sbjct: 514 --EDGRPGPPGPQ--GARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGET 569
Query: 95 GSRDPP--AGPVARARARGRSAPGSAQPASGAAGP 127
G+ PP AGP +G P Q G GP
Sbjct: 570 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 604
Score = 33.9 bits (76), Expect = 0.19
Identities = 51/180 (28%), Positives = 59/180 (32%), Gaps = 38/180 (21%)
Query: 1 MGPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVS 60
+GP G AGA A P P G+ PG A G P A G
Sbjct: 737 VGPPGPAGSAGARGAPGERGETGPPGPA------GFAGPPG----ADGQPGAKG------ 780
Query: 61 SPRPFPPRPERPSRRHRAGCGAHGP-GSRGRERRRGSRDPPAGPVARARARGRSAPGSAQ 119
E+ + GA GP G G +G P G ARG P A
Sbjct: 781 ---------EQGEAGQKGDAGAPGPQGPSGAPGPQG----PTGVTGPKGARGAQGPPGAT 827
Query: 120 PASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLG----SSPLHPVRLGR--VRAHAGPAG 173
GAAG P + P PS K G S P P R G ++ AGP G
Sbjct: 828 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP--PGRAGEPGLQGPAGPPG 885
Score = 29.3 bits (64), Expect = 4.8
Identities = 54/207 (26%), Positives = 67/207 (32%), Gaps = 44/207 (21%)
Query: 62 PRPFPPRPERPSRRHRAGCGAHG-PGSRGRERRRGSRD---------PPAGPVARARARG 111
P P P E+ R R G G PG RGR+ G+ PP P
Sbjct: 53 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 112
Query: 112 RSAPGSAQPASGA-----------------AGPAAAP-----EAAP-PAWDPATLPPSRK 148
+ A G + A GA GPA AP + P +P P
Sbjct: 113 QMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGP 172
Query: 149 RNSLG--SSPLHPVRLGR--VRAHAGPAGTSILRVAP-HPALPGAQVHWAGRHRWAARRG 203
R G P G+ GP G R P P LPG + H G +G
Sbjct: 173 RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGH-RGYPGLDGAKG 231
Query: 204 KSLQSAWWGPGGRRNSISPGRTTFPAP 230
++ PG + S SPG P P
Sbjct: 232 EA-----GAPGVKGESGSPGENGSPGP 253
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 46.6 bits (109), Expect = 3e-05
Identities = 42/144 (29%), Positives = 53/144 (36%), Gaps = 14/144 (9%)
Query: 3 PACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVA---PAGGSPLAVGGAFRV 59
P GDA + P GS+L S PG ++R PA G+P + A R
Sbjct: 722 PGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRA 781
Query: 60 SSPRPFPPRPER------PSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRS 113
P PP P+R PS + GP RR + PAGP +
Sbjct: 782 RRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGP-----SEPPG 836
Query: 114 APGSAQPASGAAGPAAAPEAAPPA 137
P A PAS PE PP+
Sbjct: 837 PPAPAGPASDTEEEEPGPEGTPPS 860
Score = 37.7 bits (86), Expect = 0.013
Identities = 43/146 (29%), Positives = 56/146 (38%), Gaps = 24/146 (16%)
Query: 11 GALSAAPAGSS-LNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRP 69
G SA P ++ L SP P + P + PA G P + SP PP P
Sbjct: 928 GVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLA-----PSPAMQPPVP 982
Query: 70 ERPSRRHRAGCGAHGPG--SRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGP 127
P GPG S R G +PPA P A + G A + +P S A
Sbjct: 983 PCP-----------GPGLESSAASRWNGETEPPAAPAALLKVPG--AGTAPKPVSVACTQ 1029
Query: 128 AA--APEAAPPAWDPATLPPSRKRNS 151
A P+ A P P +PP R ++
Sbjct: 1030 LAFSGPKLA-PRLGPRPVPPPRPEST 1054
Score = 31.6 bits (70), Expect = 0.96
Identities = 53/194 (27%), Positives = 64/194 (32%), Gaps = 36/194 (18%)
Query: 25 PDPCQLLPGTG-----WMMRPGEVA-PAGGSPLAVGGAFRV----SSPRPFPPRPERPSR 74
P C LPG G +M G + PA G P AF + P PPRP+R S
Sbjct: 658 PKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSH 717
Query: 75 --------RHRAGCGAHGP-GSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAA 125
A A GP GS +R P + R P P S +
Sbjct: 718 SLSRPGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSF 777
Query: 126 GPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHP-----------VRLGRVRAHAGPAGT 174
A + PP PP R + G SP P R R + PAG
Sbjct: 778 ALRARRKGPPPP------PPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGP 831
Query: 175 SILRVAPHPALPGA 188
S P PA P +
Sbjct: 832 SEPPGPPAPAGPAS 845
Score = 29.3 bits (64), Expect = 4.8
Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 9/127 (7%)
Query: 40 PGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDP 99
P P+ +PL G + P PP P S+ R G P S +R +
Sbjct: 270 PAARLPSAPTPLRPGFSRTPQPPAEEPPHPLTYSQLPRVGL---SPDSPAGDRNSVGSEG 326
Query: 100 PAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLP---PSRKRNSLGSSP 156
G + R+ G+S+ G+ G A P P A + LP P ++L P
Sbjct: 327 SVGSI-RSAGSGQSSEGTNGHGPGLLIENAQP--LPSAGEDQVLPGLHPPSLADNLSHRP 383
Query: 157 LHPVRLG 163
L R G
Sbjct: 384 LANCRSG 390
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 46.6 bits (109), Expect = 3e-05
Identities = 42/144 (29%), Positives = 53/144 (36%), Gaps = 14/144 (9%)
Query: 3 PACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVA---PAGGSPLAVGGAFRV 59
P GDA + P GS+L S PG ++R PA G+P + A R
Sbjct: 804 PGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRA 863
Query: 60 SSPRPFPPRPER------PSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRS 113
P PP P+R PS + GP RR + PAGP +
Sbjct: 864 RRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGP-----SEPPG 918
Query: 114 APGSAQPASGAAGPAAAPEAAPPA 137
P A PAS PE PP+
Sbjct: 919 PPAPAGPASDTEEEEPGPEGTPPS 942
Score = 37.7 bits (86), Expect = 0.013
Identities = 43/146 (29%), Positives = 56/146 (38%), Gaps = 24/146 (16%)
Query: 11 GALSAAPAGSS-LNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRP 69
G SA P ++ L SP P + P + PA G P + SP PP P
Sbjct: 1010 GVASATPGPAAPLPSPTPGESPPASSLPQPEPSSLPAQGVPTPLA-----PSPAMQPPVP 1064
Query: 70 ERPSRRHRAGCGAHGPG--SRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGP 127
P GPG S R G +PPA P A + G A + +P S A
Sbjct: 1065 PCP-----------GPGLESSAASRWNGETEPPAAPAALLKVPG--AGTAPKPVSVACTQ 1111
Query: 128 AA--APEAAPPAWDPATLPPSRKRNS 151
A P+ A P P +PP R ++
Sbjct: 1112 LAFSGPKLA-PRLGPRPVPPPRPEST 1136
Score = 31.6 bits (70), Expect = 0.96
Identities = 53/194 (27%), Positives = 64/194 (32%), Gaps = 36/194 (18%)
Query: 25 PDPCQLLPGTG-----WMMRPGEVA-PAGGSPLAVGGAFRV----SSPRPFPPRPERPSR 74
P C LPG G +M G + PA G P AF + P PPRP+R S
Sbjct: 740 PKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDPPRPKRRSH 799
Query: 75 --------RHRAGCGAHGP-GSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAA 125
A A GP GS +R P + R P P S +
Sbjct: 800 SLSRPGPTEGDAEGEAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSF 859
Query: 126 GPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHP-----------VRLGRVRAHAGPAGT 174
A + PP PP R + G SP P R R + PAG
Sbjct: 860 ALRARRKGPPPP------PPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGP 913
Query: 175 SILRVAPHPALPGA 188
S P PA P +
Sbjct: 914 SEPPGPPAPAGPAS 927
Score = 29.3 bits (64), Expect = 4.8
Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 9/127 (7%)
Query: 40 PGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDP 99
P P+ +PL G + P PP P S+ R G P S +R +
Sbjct: 352 PAARLPSAPTPLRPGFSRTPQPPAEEPPHPLTYSQLPRVGL---SPDSPAGDRNSVGSEG 408
Query: 100 PAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLP---PSRKRNSLGSSP 156
G + R+ G+S+ G+ G A P P A + LP P ++L P
Sbjct: 409 SVGSI-RSAGSGQSSEGTNGHGPGLLIENAQP--LPSAGEDQVLPGLHPPSLADNLSHRP 465
Query: 157 LHPVRLG 163
L R G
Sbjct: 466 LANCRSG 472
>gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 576
Score = 46.2 bits (108), Expect = 4e-05
Identities = 63/213 (29%), Positives = 85/213 (39%), Gaps = 32/213 (15%)
Query: 41 GEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGR-ERRRGSRDP 99
G+VA G P G RV+ P P+ P H G G+ GP RGR +R +G R
Sbjct: 119 GQVAARGKEPKPGG---RVTLPALHLPKGVCP---HHPGKGSAGPSRRGRGQRAKGFRGS 172
Query: 100 PAGPVARARARGRSAPG-SAQPASGAAGPAAAPEAAPP---AWDPATLPPSRKRNSLGSS 155
+R RG++A G P +G +G + P + +L + +
Sbjct: 173 EMNSESR---RGQTAAGREKHPRAGCSGEGETGASYPEELHGHEAESLLLEALDDLAHQA 229
Query: 156 PLHPVRL----GRVRAHAGPAGTSILRVAPHPAL----PGAQVHWAGRHRWAARRGKSLQ 207
LH VRL G ++ GPAG + AL GA R R RRG
Sbjct: 230 ALHAVRLDGDEGALQVGHGPAGRELEGPGGGAALGEQRAGATTTPGSRRR---RRGAGRS 286
Query: 208 SAWWGPGGRRNSISPGR-TTFPAPPTQEAASRE 239
+ W PGG P R T APP + A+ E
Sbjct: 287 AGWPHPGG------PSRPTRRNAPPARPDAAGE 313
Score = 32.7 bits (73), Expect = 0.43
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 85 PGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLP 144
PGSR R R G P +R R+AP + A+G P P A P
Sbjct: 274 PGSRRRRRGAGRSAGWPHPGGPSRPTRRNAPPARPDAAGEQCP--RPAGARPRQAEIETD 331
Query: 145 PSRKRNSLGSSPLHPVRLGRVRAHAGPAGTS 175
P +S + + R ++H+ P TS
Sbjct: 332 PETGSDSFSTWTSYEFNYARPKSHSSPLSTS 362
>gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo
sapiens]
Length = 404
Score = 46.2 bits (108), Expect = 4e-05
Identities = 63/213 (29%), Positives = 85/213 (39%), Gaps = 32/213 (15%)
Query: 41 GEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGR-ERRRGSRDP 99
G+VA G P G RV+ P P+ P H G G+ GP RGR +R +G R
Sbjct: 119 GQVAARGKEPKPGG---RVTLPALHLPKGVCP---HHPGKGSAGPSRRGRGQRAKGFRGS 172
Query: 100 PAGPVARARARGRSAPG-SAQPASGAAGPAAAPEAAPP---AWDPATLPPSRKRNSLGSS 155
+R RG++A G P +G +G + P + +L + +
Sbjct: 173 EMNSESR---RGQTAAGREKHPRAGCSGEGETGASYPEELHGHEAESLLLEALDDLAHQA 229
Query: 156 PLHPVRL----GRVRAHAGPAGTSILRVAPHPAL----PGAQVHWAGRHRWAARRGKSLQ 207
LH VRL G ++ GPAG + AL GA R R RRG
Sbjct: 230 ALHAVRLDGDEGALQVGHGPAGRELEGPGGGAALGEQRAGATTTPGSRRR---RRGAGRS 286
Query: 208 SAWWGPGGRRNSISPGR-TTFPAPPTQEAASRE 239
+ W PGG P R T APP + A+ E
Sbjct: 287 AGWPHPGG------PSRPTRRNAPPARPDAAGE 313
Score = 32.7 bits (73), Expect = 0.43
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 85 PGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLP 144
PGSR R R G P +R R+AP + A+G P P A P
Sbjct: 274 PGSRRRRRGAGRSAGWPHPGGPSRPTRRNAPPARPDAAGEQCP--RPAGARPRQAEIETD 331
Query: 145 PSRKRNSLGSSPLHPVRLGRVRAHAGPAGTS 175
P +S + + R ++H+ P TS
Sbjct: 332 PETGSDSFSTWTSYEFNYARPKSHSSPLSTS 362
>gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo
sapiens]
Length = 404
Score = 46.2 bits (108), Expect = 4e-05
Identities = 63/213 (29%), Positives = 85/213 (39%), Gaps = 32/213 (15%)
Query: 41 GEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGR-ERRRGSRDP 99
G+VA G P G RV+ P P+ P H G G+ GP RGR +R +G R
Sbjct: 119 GQVAARGKEPKPGG---RVTLPALHLPKGVCP---HHPGKGSAGPSRRGRGQRAKGFRGS 172
Query: 100 PAGPVARARARGRSAPG-SAQPASGAAGPAAAPEAAPP---AWDPATLPPSRKRNSLGSS 155
+R RG++A G P +G +G + P + +L + +
Sbjct: 173 EMNSESR---RGQTAAGREKHPRAGCSGEGETGASYPEELHGHEAESLLLEALDDLAHQA 229
Query: 156 PLHPVRL----GRVRAHAGPAGTSILRVAPHPAL----PGAQVHWAGRHRWAARRGKSLQ 207
LH VRL G ++ GPAG + AL GA R R RRG
Sbjct: 230 ALHAVRLDGDEGALQVGHGPAGRELEGPGGGAALGEQRAGATTTPGSRRR---RRGAGRS 286
Query: 208 SAWWGPGGRRNSISPGR-TTFPAPPTQEAASRE 239
+ W PGG P R T APP + A+ E
Sbjct: 287 AGWPHPGG------PSRPTRRNAPPARPDAAGE 313
Score = 32.7 bits (73), Expect = 0.43
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 85 PGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLP 144
PGSR R R G P +R R+AP + A+G P P A P
Sbjct: 274 PGSRRRRRGAGRSAGWPHPGGPSRPTRRNAPPARPDAAGEQCP--RPAGARPRQAEIETD 331
Query: 145 PSRKRNSLGSSPLHPVRLGRVRAHAGPAGTS 175
P +S + + R ++H+ P TS
Sbjct: 332 PETGSDSFSTWTSYEFNYARPKSHSSPLSTS 362
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 45.8 bits (107), Expect = 5e-05
Identities = 42/148 (28%), Positives = 56/148 (37%), Gaps = 6/148 (4%)
Query: 41 GEVAPAGGSPLAVGGAFRVSS-PRP-FPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRD 98
G+ P SP++ + + P P PPR RP R + A P G+ R+
Sbjct: 711 GDGPPGPSSPMSRSQEYLLDEGPAPGTPPREARPGRHGHSIKRASVPPVPGKPRQ--VLP 768
Query: 99 PPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLH 158
P + ++ PGS Q G GPA A P P LPP+ + S S P
Sbjct: 769 PGTSHFTPPQTPTKTRPGSPQALGGPHGPAPATAKVKPT--PQLLPPTERPMSPRSLPQS 826
Query: 159 PVRLGRVRAHAGPAGTSILRVAPHPALP 186
P G P + AP PA P
Sbjct: 827 PTHRGFAYVLPQPVEGEVGPAAPGPAPP 854
Score = 34.7 bits (78), Expect = 0.11
Identities = 47/151 (31%), Positives = 56/151 (37%), Gaps = 27/151 (17%)
Query: 13 LSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERP 72
L +P +S P LPG G EV A G+P V SP+P PP
Sbjct: 1239 LQGSPTPTSKKVP-----LPGPG----SPEVKRAHGTPPPV-------SPKPPPPPTAPK 1282
Query: 73 SRRHRAGC--GAHGPG---SRGRERRRGSRDPPAGP----VARARARGRSAPGSAQPASG 123
+ AG G+ GP S R+ PP P + A+ AP PA
Sbjct: 1283 PVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKP 1342
Query: 124 --AAGPAAAPEAAPPAWDPATLPPSRKRNSL 152
AA AAA AAPPA P R L
Sbjct: 1343 PRAAAAAAAAAAAPPAPPEGASPGDSARQKL 1373
Score = 33.5 bits (75), Expect = 0.25
Identities = 40/115 (34%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Query: 84 GPGSRGRERRRG-----SRDPPAGPVAR--ARARGRSAPGSAQPASGAAGPAAAPEAA-- 134
GPGS +R G S PP P A +A GSA P S A PA P AA
Sbjct: 1254 GPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGP-SPAPSPARQPPAALA 1312
Query: 135 -PPAWDPATLPPSRKRNSLGSSPLH-PVRLGRVRAHAGPAGTSILRVAPHPALPG 187
PP P+ K S G+ LH P + R A A A + P A PG
Sbjct: 1313 KPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAA-AAAAAAAAPPAPPEGASPG 1366
Score = 32.0 bits (71), Expect = 0.73
Identities = 39/135 (28%), Positives = 42/135 (31%), Gaps = 22/135 (16%)
Query: 27 PCQLLPGT-GWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGP 85
P + PG G ++ V P G P V P P RP G G HGP
Sbjct: 739 PREARPGRHGHSIKRASVPPVPGKPRQVLPPGTSHFTPPQTPTKTRPGSPQALG-GPHGP 797
Query: 86 GSRGR------------ERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAA---A 130
ER R P P R A QP G GPAA A
Sbjct: 798 APATAKVKPTPQLLPPTERPMSPRSLPQSPTHRGFAYVLP-----QPVEGEVGPAAPGPA 852
Query: 131 PEAAPPAWDPATLPP 145
P P A LPP
Sbjct: 853 PPPVPTAVPTLCLPP 867
Score = 29.6 bits (65), Expect = 3.6
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 88 RGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPAT----L 143
+ +ER G PP V + +PAS AGP P PPA P T L
Sbjct: 1153 KAKEREAGPEPPPPLSVYH----NGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHL 1208
Query: 144 PPSRKRNSLGSSPLHP 159
PP P P
Sbjct: 1209 PPLPPPEGEARKPAKP 1224
Score = 28.5 bits (62), Expect = 8.1
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 61 SPRPFPPRPER-----PSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARAR------- 108
+PRP P P R S +H+ A GPG RRR P G +A AR
Sbjct: 1029 TPRPASPEPGRVATVLASVKHKE---AIGPGGEVVNRRRTLSGPVTGLLATARRGPGESA 1085
Query: 109 --------ARGRSAP-GSAQPASGAAGPAAA 130
GR P G ++ +G GP A
Sbjct: 1086 DPGPFVEDGTGRQRPRGPSKGEAGVEGPPLA 1116
>gi|239754838 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 45.8 bits (107), Expect = 5e-05
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 26/124 (20%)
Query: 55 GAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGRSA 114
G FR +PR F RP +P + R G G++G+ G +PPAG + G
Sbjct: 88 GPFR--APRIFAARPSQPLGQRRGG------GAKGQRGGGGPPNPPAGQ--GSDTGGTKT 137
Query: 115 PGSAQPASGAAGPAAAPEAAP-------PAWDPA------TLPPSRKR--NSLGSSPLHP 159
PG+ A+ AA +A+PEA P P + P+ +LPP R LGS P
Sbjct: 138 PGTTTAAAAAATGSASPEARPLVGSCRSPGYGPSLVSADLSLPPRRLAIPRQLGSGSA-P 196
Query: 160 VRLG 163
R+G
Sbjct: 197 SRIG 200
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 45.4 bits (106), Expect = 6e-05
Identities = 51/161 (31%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 7 GGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFP 66
G L A P G+ +P P PG PG P G +V++ RP
Sbjct: 113 GRQGSGLGAGP-GAGTWAPAP----PGVSKPRCPGRARPGEGQQ-------QVTTARP-- 158
Query: 67 PRPERPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGP-VARARARG-RSAPGSAQPASGA 124
P R +R+ RAG A G G R G AGP V A G R AP A G
Sbjct: 159 PAINRGARQPRAGAAAAGRGPGAGAWRTGEAAASAGPAVGEGGAMGSRRAPSRGWGAGGR 218
Query: 125 AGPAAAPEAAPPAWDPATLPPS-----RKRNSLGSSPL-HP 159
+G E P W P+ S R SL S+ L HP
Sbjct: 219 SGAGGDGEDDGPVWIPSPASRSYLLSVRPETSLSSNRLSHP 259
Score = 32.3 bits (72), Expect = 0.56
Identities = 42/166 (25%), Positives = 61/166 (36%), Gaps = 20/166 (12%)
Query: 8 GDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVA-----------PAGGSPLAVGGA 56
G +G S S++ +PD Q PG G PG+ PL G
Sbjct: 581 GSSGTDSTRKPASAVGTPDKAQKAPGPG----PGQEVYFSLKDMYLENTQAVRPLGEEGP 636
Query: 57 FRVSSPRPFP-PRPERPSRRHRAGC-GAHGPGSRG---RERRRGSRDPPAGPVARARARG 111
+S P P+ + P R G GA G + + R +R A P + A
Sbjct: 637 QTLSVRAPGESPKGKAPLRARSEGVPGAPGQPTHSLTPQPTRPFNRKRFAPPKPKGEATT 696
Query: 112 RSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPL 157
S P S+ + G + +A P A PP+R+R+ S L
Sbjct: 697 DSKPISSLSQAPECGAQSLGKAPPQASVQVPTPPARRRHGTRDSTL 742
Score = 32.3 bits (72), Expect = 0.56
Identities = 55/214 (25%), Positives = 74/214 (34%), Gaps = 23/214 (10%)
Query: 8 GDAGALSAAPAGSSLNS----PDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSSPR 63
G+AG +A G S S P + PG P A LA+G + P+
Sbjct: 1318 GEAGGQAAPGQGPSAESIAQEPSQEEKFPGEALTGLPA----ATPEELALGARRKRFLPK 1373
Query: 64 ---------PFPPRPERPS---RRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARG 111
P E P+ R R PG+ GRERR ++ A + RA
Sbjct: 1374 VRAAGDGEATTPEERESPTVSPRGPRKSLVPGSPGTPGRERRSPTQGRKASMLEVPRAEE 1433
Query: 112 RSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRAHAGP 171
A G P+ A G E A TL RK L +P +R RV
Sbjct: 1434 ELAAGDLGPSPKAGG--LDTEVALDEGKQETLAKPRKAKDLLKAP-QVIRKIRVEQFPDA 1490
Query: 172 AGTSILRVAPHPALPGAQVHWAGRHRWAARRGKS 205
+G+ L L + + WA R G+S
Sbjct: 1491 SGSLKLWCQFFNILSDSVLTWAKDQRPVGEVGRS 1524
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 45.1 bits (105), Expect = 8e-05
Identities = 65/225 (28%), Positives = 78/225 (34%), Gaps = 46/225 (20%)
Query: 31 LPGT-GWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRG 89
LPG G RPGE+ P G + PP + H A A PG+ G
Sbjct: 360 LPGEPGLQGRPGELGPQGPTG---------------PPGAKGQEGAHGAPGAAGNPGAPG 404
Query: 90 RERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATL----PP 145
G PP G V RG + GAAG +P P DP PP
Sbjct: 405 HVGAPGPSGPP-GSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPP 463
Query: 146 SRKRN---SLGSSPLHPVRLGRVRAHAGPAGTSILRVAPH-PALPGAQVHWAGRHRWAAR 201
+ ++ L SP P GP GT R AP P PG+ R
Sbjct: 464 GKGKDGEPGLRGSPGLP----------GPLGTKGDRGAPGIPGSPGS--------RGDPG 505
Query: 202 RGKSLQSAWWGPGGRRNSISPGRTTFPA-PPTQEAASREDLGSFL 245
G + GP G + SPG P P Q A R+ L S L
Sbjct: 506 IGVAGPPGPSGPPGDKG--SPGSRGLPGFPGPQGPAGRDGLSSLL 548
Score = 40.0 bits (92), Expect = 0.003
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 31 LPGT-GWMMRPGEVAPAGGSPLAVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHG-PGSR 88
LPG G GE PAG P + G + +P P P + P + + G G PG +
Sbjct: 311 LPGLKGDRGEKGEAGPAG--PPGLPGTTSLFTPHPRMPGEQGP-KGEKGDPGLPGEPGLQ 367
Query: 89 GRERRRGSRDPPAGPVARARARGRSAPGSA-QPAS----GAAGPAAAP 131
GR G + P P A+ + APG+A P + GA GP+ P
Sbjct: 368 GRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPP 415
Score = 37.4 bits (85), Expect = 0.017
Identities = 40/140 (28%), Positives = 51/140 (36%), Gaps = 14/140 (10%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGT-GWMMRPGEVAPAGGSPLAVGGA---F 57
GP + G G+ A + Q PG G+M PG P G +A
Sbjct: 606 GPPGIAGPQGSQGERGADGEVGQKGD-QGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGI 664
Query: 58 RVSSPRPFPPRPERPSRRHRAGCGAHG-PGSRGRERRRGSRDPPAGPVARARARGRSAPG 116
+ S + PP P+ PS G G PG G+E R G PP P +A G P
Sbjct: 665 QGSPGKEGPPGPQGPS-------GLPGIPGEEGKEGRDGKPGPPGEP-GKAGEPGLPGPE 716
Query: 117 SAQPASGAAGPAAAPEAAPP 136
A+ G G A P
Sbjct: 717 GARGPPGFKGHTGDSGAPGP 736
Score = 32.0 bits (71), Expect = 0.73
Identities = 43/149 (28%), Positives = 52/149 (34%), Gaps = 24/149 (16%)
Query: 2 GPACVGGDAGA-----LSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAG-----GSPL 51
GP G AGA + +P P LPG PGE G G P
Sbjct: 648 GPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGI-----PGEEGKEGRDGKPGPPG 702
Query: 52 AVGGAFRVSSPRPFPPRPERPSRRHRAGCGAHGP----GSRGRERRRG--SRDPPAGPVA 105
G A P P R + H GA GP G+ G + G +D GP
Sbjct: 703 EPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTG 762
Query: 106 RARARG-RSAPG-SAQPAS-GAAGPAAAP 131
+G R PG + P S G GP+ P
Sbjct: 763 PQGPQGPRGPPGKNGSPGSPGEPGPSGTP 791
Score = 30.4 bits (67), Expect = 2.1
Identities = 69/261 (26%), Positives = 87/261 (33%), Gaps = 43/261 (16%)
Query: 8 GDAGALSAAPAGSSLNSPDPCQLLPGT-GWMMRPGEVAPAG----GSPLAVGGAFRVSSP 62
GD G A P G S P + PG+ G PG PAG S L+ G ++
Sbjct: 502 GDPGIGVAGPPGPS--GPPGDKGSPGSRGLPGFPGPQGPAGRDGLSSLLSPGDINLLAKD 559
Query: 63 -----RPFPPR-PERPSRRHRAGCGAHGPGSRGRERRRGSRDPPA--GPVARARARGRSA 114
P PP P P + G PG G E ++G PP GP A +G
Sbjct: 560 VCNDCPPGPPGLPGLPGFKGDKGVPGK-PGREGTEGKKGEAGPPGLPGPPGIAGPQGSQG 618
Query: 115 PGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGR--VRAHAGPA 172
A G G P P P P + + + P G GP
Sbjct: 619 ERGADGEVGQKGDQGHP-GVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQ 677
Query: 173 GTSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPT 232
G S L P +PG + GK + GP G PG+ P P
Sbjct: 678 GPSGL-----PGIPGEE-------------GKEGRDGKPGPPG-----EPGKAGEPGLPG 714
Query: 233 QEAASREDLGSFLHSALAGCP 253
E A R G H+ +G P
Sbjct: 715 PEGA-RGPPGFKGHTGDSGAP 734
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 45.1 bits (105), Expect = 8e-05
Identities = 67/245 (27%), Positives = 90/245 (36%), Gaps = 48/245 (19%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSS 61
G + GG ++A + S + P G + PG + A L GG +
Sbjct: 129 GNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGL--GGRSARAR 186
Query: 62 PRPFPPRPERPSRR-HRAGCGAHGP--GSRGRERRRGSRDPPAGPV-----------ARA 107
R P R RP H G GP G+RGR R G+ GP A A
Sbjct: 187 TRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAA 246
Query: 108 RARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRA 167
R G S PG ++ S + A P PPA PA P +R+R + +
Sbjct: 247 RCLGLSPPGRSRLFSPRSSLARPPLRFPPA-RPALSPSARRRCRVNWN-----------Q 294
Query: 168 HAGPAGTSILRVAPH-PALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTT 226
+ PA + R A H P+ P A +G AARR PG + PG
Sbjct: 295 SSRPASHNAQRAARHIPSRPRA----SGLRARAARR----------PG-----LDPGPAP 335
Query: 227 FPAPP 231
+P P
Sbjct: 336 YPLTP 340
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 45.1 bits (105), Expect = 8e-05
Identities = 67/245 (27%), Positives = 90/245 (36%), Gaps = 48/245 (19%)
Query: 2 GPACVGGDAGALSAAPAGSSLNSPDPCQLLPGTGWMMRPGEVAPAGGSPLAVGGAFRVSS 61
G + GG ++A + S + P G + PG + A L GG +
Sbjct: 129 GNSRAGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGL--GGRSARAR 186
Query: 62 PRPFPPRPERPSRR-HRAGCGAHGP--GSRGRERRRGSRDPPAGPV-----------ARA 107
R P R RP H G GP G+RGR R G+ GP A A
Sbjct: 187 TRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAA 246
Query: 108 RARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVRLGRVRA 167
R G S PG ++ S + A P PPA PA P +R+R + +
Sbjct: 247 RCLGLSPPGRSRLFSPRSSLARPPLRFPPA-RPALSPSARRRCRVNWN-----------Q 294
Query: 168 HAGPAGTSILRVAPH-PALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTT 226
+ PA + R A H P+ P A +G AARR PG + PG
Sbjct: 295 SSRPASHNAQRAARHIPSRPRA----SGLRARAARR----------PG-----LDPGPAP 335
Query: 227 FPAPP 231
+P P
Sbjct: 336 YPLTP 340
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,537,521
Number of Sequences: 37866
Number of extensions: 1185709
Number of successful extensions: 11277
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 1446
Number of HSP's that attempted gapping in prelim test: 7167
Number of HSP's gapped (non-prelim): 4139
length of query: 315
length of database: 18,247,518
effective HSP length: 102
effective length of query: 213
effective length of database: 14,385,186
effective search space: 3064044618
effective search space used: 3064044618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.