Guide to the Human Genome
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Name: LMAN1 Sequence: fasta or formatted (510aa) NCBI GI: 5031873
Description:

lectin, mannose-binding, 1 precursor

Referenced in:

Coagulation
ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         31           3
 C cysteine            1.0          5           1
 D aspartate           5.3         27           2
 E glutamate           7.5         38           2
 F phenylalanine       5.7         29           2
 G glycine             8.4         43           2
 H histidine           3.3         17           1
 I isoleucine          5.9         30           2
 K lysine              5.9         30           3
 L leucine             6.7         34           3
 M methionine          2.0         10           1
 N asparagine          4.5         23           2
 P proline             5.3         27           2
 Q glutamine           6.9         35           2
 R arginine            5.7         29           2
 S serine              5.5         28           2
 T threonine           4.3         22           2
 V valine              6.7         34           3
 W tryptophan          1.0          5           1
 Y tyrosine            2.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lectin, mannose-binding, 1 precursor 
LMAN1L                0.247   lectin, mannose-binding, 1 like 
LMAN2                 0.133   lectin, mannose-binding 2 precursor 
LMAN2L                0.127   lectin, mannose-binding 2-like isoform 2 
LMAN2L                0.123   lectin, mannose-binding 2-like isoform 1 
KIF5C                 0.020   kinesin family member 5C 
AKAP9                 0.017   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.017   A-kinase anchor protein 9 isoform 3 
GOLGB1                0.016   golgi autoantigen, golgin subfamily b, macrogolgin ...
GOLGA3                0.015   Golgi autoantigen, golgin subfamily a, 3 
RDX                   0.015   radixin 
EEA1                  0.014   early endosome antigen 1, 162kD 
CEP250                0.014   centrosomal protein 2 
MSN                   0.014   moesin 
LOC100133758          0.013   PREDICTED: hypothetical protein, partial 
PRKCSH                0.013   protein kinase C substrate 80K-H isoform 2 
UBTF                  0.013   upstream binding transcription factor, RNA polymera...
UBTF                  0.013   upstream binding transcription factor, RNA polymera...
UBTF                  0.013   upstream binding transcription factor, RNA polymerase...
CEP152                0.013   centrosomal protein 152kDa 
CCDC150               0.013   coiled-coil domain containing 150 
CEP110                0.013   centrosomal protein 110kDa 
KIF5A                 0.013   kinesin family member 5A 
SEPT8                 0.013   septin 8 isoform d 
SEPT8                 0.013   septin 8 isoform a 
SEPT8                 0.013   septin 8 isoform b 
CCDC64B               0.013   coiled-coil domain containing 64B 
UBTFL3                0.012   PREDICTED: upstream binding transcription factor, R...
UBTFL5                0.012   PREDICTED: upstream binding transcription factor, R...
GOLGA2                0.012   Golgi autoantigen, golgin subfamily a, 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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