Search of human proteins with 239745471

Search of human proteins with 239745471

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745471 PREDICTED: hypothetical protein XP_002343501 [Homo
sapiens]
         (202 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239745471 PREDICTED: hypothetical protein XP_002343501 [Homo ...   420   e-118
gi|239756530 PREDICTED: hypothetical protein [Homo sapiens]           192   2e-49
gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [H...    33   0.13 
gi|148833508 notch1 preproprotein [Homo sapiens]                       32   0.37 
gi|4885433 mitogen-activated protein kinase 8 interacting protei...    32   0.37 
gi|7662236 TSC22 domain family, member 2 [Homo sapiens]                32   0.37 
gi|4557489 cone-rod homeobox protein [Homo sapiens]                    31   0.82 
gi|167234429 zinc finger and BTB domain containing 17 [Homo sapi...    30   1.4  
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              30   1.4  
gi|18379332 WW domain-containing adapter with a coiled-coil regi...    30   1.4  
gi|76880480 hypothetical protein LOC9865 [Homo sapiens]                30   1.4  
gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo sap...    30   1.4  
gi|122939149 Rho GTPase activating protein 9 isoform 3 [Homo sap...    30   1.4  
gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo sap...    30   1.4  
gi|38788260 bromodomain PHD finger transcription factor isoform ...    30   1.8  
gi|38788274 bromodomain PHD finger transcription factor isoform ...    30   1.8  
gi|38327039 heat shock 70kDa protein 4 [Homo sapiens]                  29   2.4  
gi|11386181 H2.0-like homeobox [Homo sapiens]                          29   2.4  
gi|46358366 zinc finger protein 746 [Homo sapiens]                     29   2.4  
gi|239740950 PREDICTED: similar to mitogen-activated protein kin...    29   3.1  
gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo sap...    29   3.1  
gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo sa...    29   3.1  
gi|44771211 mediator complex subunit 13-like [Homo sapiens]            29   3.1  
gi|42716289 erythrocyte membrane protein band 4.1 (elliptocytosi...    29   3.1  
gi|42716291 erythrocyte membrane protein band 4.1 (elliptocytosi...    29   3.1  
gi|4758274 erythrocyte membrane protein band 4.1 (elliptocytosis...    29   3.1  
gi|38788219 zinc finger protein 428 [Homo sapiens]                     28   4.1  
gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]        28   4.1  
gi|239750735 PREDICTED: hypothetical protein XP_002347519 [Homo ...    28   4.1  
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]       28   4.1  

>gi|239745471 PREDICTED: hypothetical protein XP_002343501 [Homo
           sapiens]
          Length = 202

 Score =  420 bits (1079), Expect = e-118
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MQCKGECDLRPEDPEYQESWQRKSCRGKARSPDREIPSVSEMQATPSPCPANADLQGDVV 60
           MQCKGECDLRPEDPEYQESWQRKSCRGKARSPDREIPSVSEMQATPSPCPANADLQGDVV
Sbjct: 1   MQCKGECDLRPEDPEYQESWQRKSCRGKARSPDREIPSVSEMQATPSPCPANADLQGDVV 60

Query: 61  EGVHVGCASQEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRA 120
           EGVHVGCASQEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRA
Sbjct: 61  EGVHVGCASQEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRA 120

Query: 121 GGKDASLVQHLGSCITTAPSQPTALAPLTSAPLTYKSLVNEILGKVNYDQGNNVPQQTLE 180
           GGKDASLVQHLGSCITTAPSQPTALAPLTSAPLTYKSLVNEILGKVNYDQGNNVPQQTLE
Sbjct: 121 GGKDASLVQHLGSCITTAPSQPTALAPLTSAPLTYKSLVNEILGKVNYDQGNNVPQQTLE 180

Query: 181 KAEDISGGPGGSWASGDVSNKK 202
           KAEDISGGPGGSWASGDVSNKK
Sbjct: 181 KAEDISGGPGGSWASGDVSNKK 202


>gi|239756530 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score =  192 bits (488), Expect = 2e-49
 Identities = 97/111 (87%), Positives = 100/111 (90%), Gaps = 3/111 (2%)

Query: 22  RKSCRGKARSPDREIPSVSEM-QATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQED 80
           R   RG+A  PD  IP++    QATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQED
Sbjct: 99  RAESRGEASVPD--IPALGVPGQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQED 156

Query: 81  EVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHL 131
           EVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHL
Sbjct: 157 EVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHL 207


>gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [Homo
            sapiens]
          Length = 1447

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 22   RKSCRGKARSPDREIPSVSEMQATPSPC---PANADLQGDVVEGVHVGCASQEPLIQNDQ 78
            R S R + R+   E  ++   Q+TP      P+         + V VG + Q    +ND 
Sbjct: 1347 RVSRRAQQRAESPESSAIESTQSTPQKGRGRPSKTPSPSQPKKNVRVGRSKQAATKENDS 1406

Query: 79   EDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGK 123
             +EVD +Q + P        V+ + Q +   E  +T   RR   K
Sbjct: 1407 SEEVDVFQGSSP--------VDDIPQEETEEEEVSTVNVRRRSAK 1443


>gi|148833508 notch1 preproprotein [Homo sapiens]
          Length = 2555

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 70   QEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQ 129
            +EP++  D +D+ D  Q  + H+   + ++ A+      GE DA   +    G D     
Sbjct: 1826 EEPVVLPDLDDQTDHRQWTQQHLDAADLRMSAMAPTPPQGEVDADCMDVNVRGPDGFTPL 1885

Query: 130  HLGSC----ITTAPSQPTALAPLTSAPLTYK 156
             + SC    + T  S+    AP   +   Y+
Sbjct: 1886 MIASCSGGGLETGNSEEEEDAPAVISDFIYQ 1916


>gi|4885433 mitogen-activated protein kinase 8 interacting protein 1
           [Homo sapiens]
          Length = 711

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 1/105 (0%)

Query: 62  GVHVGCASQEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAG 121
           G   G   Q  ++Q D  D       AE      + +  A + G GP + ++       G
Sbjct: 80  GGGAGSRLQAEMLQMDLIDATGDTPGAEDDEEDDDEERAARRPGAGPPKAESGQEPASRG 139

Query: 122 -GKDASLVQHLGSCITTAPSQPTALAPLTSAPLTYKSLVNEILGK 165
            G+     Q  GS  T  P +PT L      P +  +L N  LGK
Sbjct: 140 QGQSQGQSQGPGSGDTYRPKRPTTLNLFPQVPRSQDTLNNNSLGK 184


>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
          Length = 780

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 20/123 (16%)

Query: 89  EPHVCQQEHQVEALQQGQGPGETDATAAERRAG-GKDASLVQHLGSCITTAPSQPT-ALA 146
           + HV   +    A     G   + ATAA    G G++AS V   G+ +  A SQP+ A+A
Sbjct: 382 QQHVAGLQPPSPAQPSSTGAAASPATAATLPVGTGQNASSV---GAQLMGASSQPSEAMA 438

Query: 147 PLTSA---------------PLTYKSLVNEILGKVNYDQGNNVPQQTLEKAEDISGGPGG 191
           P T                 P T   +V   LG     Q  +VP   +  +  +S  PGG
Sbjct: 439 PRTGPAQGGQVAPCQPTGVPPATVGGVVQPCLGPAGAGQPQSVPPPQMGGSGPLSAVPGG 498

Query: 192 SWA 194
             A
Sbjct: 499 PHA 501


>gi|4557489 cone-rod homeobox protein [Homo sapiens]
          Length = 299

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 76  NDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAG 121
           N  E  V  W K     C+Q+ Q +  QQ    G+  A  A+R+AG
Sbjct: 77  NLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRKAG 122


>gi|167234429 zinc finger and BTB domain containing 17 [Homo
           sapiens]
          Length = 803

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 27  GKARSPDREIPSVSEMQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQEDEVDAWQ 86
           G+A+S         +  A   P P   +L+ D   G+    A       ++QE EV+  +
Sbjct: 171 GQAQSAASGAEQTEKADAPREPPPV--ELKPDPTSGMAAAEAEAALSESSEQEMEVEPAR 228

Query: 87  KAEPHVCQQEHQVEALQQGQGPGETDATAAERRAG 121
           K E    +QE Q E   +G GP E     ++   G
Sbjct: 229 KGEEEQKEQEEQEE---EGAGPAEVKEEGSQLENG 260


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 5/177 (2%)

Query: 2    QCKGECDLRPEDPEYQES-WQRKSCRGKARSPDREIPSVSEMQATPS-PCPANADLQGDV 59
            + +GE     ED E  E+ W+ +     A +P+ E  +  E ++  +       + + + 
Sbjct: 1878 EAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEG 1937

Query: 60   VEGVHVGCASQEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERR 119
             E      A+QE   Q   E EV   Q+AE     +   VEAL+      ET     E +
Sbjct: 1938 AEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEV---EVETQEAEGEAQ 1994

Query: 120  AGGKDASLVQHLGSCITTAPSQPTALAPLTSAPLTYKSLVNEILGKVNYDQGNNVPQ 176
               +D    +  G               + + P +      E+ G+    +G+  P+
Sbjct: 1995 PESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPE 2051


>gi|18379332 WW domain-containing adapter with a coiled-coil region
           isoform 3 [Homo sapiens]
          Length = 544

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 15/91 (16%)

Query: 81  EVDAWQKAEPHVCQQEHQVEALQQGQG--PGETD-------ATAAERRAGGKDAS---LV 128
           EV  W+K +  + +++ Q EA +      P + D       ATA    A GK  S    V
Sbjct: 153 EVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDYRREVMQATATSGFASGKSTSGDKPV 212

Query: 129 QHLGSCITTAPSQPTALAPLTSAPLTYKSLV 159
            H  SC T + S  + L P TSAP T  S V
Sbjct: 213 SH--SCTTPSTSSASGLNP-TSAPPTSASAV 240


>gi|76880480 hypothetical protein LOC9865 [Homo sapiens]
          Length = 811

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 28/94 (29%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 22  RKSCRGKARSPDREIPSVSEMQATPSPCPANADLQGDVVEG--VHVGCASQEPLIQ---- 75
           R + R   R P  + PS S + A   P P + DL      G       A  EP       
Sbjct: 479 RSALRLSRRGPGLQQPSPS-VAAAAGPAPQSLDLHKKPQRGRPTRADPALAEPTPTASPG 537

Query: 76  NDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPG 109
           +      D WQ+A  H    EHQ  A Q   G G
Sbjct: 538 SAPSPAGDPWQRATKHRLGTEHQERAAQSDGGAG 571


>gi|122939147 Rho GTPase activating protein 9 isoform 1 [Homo
           sapiens]
          Length = 731

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 71  EPLIQNDQEDEVDAWQKAEPHVCQ---QEHQVEALQQGQGPGETDA 113
           E L+Q+D E E+ AW +A   V +   +E+ +E    G GP E  A
Sbjct: 412 EFLLQSDHETELRAWHRALRTVIERLDRENPLELRLSGSGPAELSA 457


>gi|122939149 Rho GTPase activating protein 9 isoform 3 [Homo
           sapiens]
          Length = 547

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 71  EPLIQNDQEDEVDAWQKAEPHVCQ---QEHQVEALQQGQGPGETDA 113
           E L+Q+D E E+ AW +A   V +   +E+ +E    G GP E  A
Sbjct: 228 EFLLQSDHETELRAWHRALRTVIERLDRENPLELRLSGSGPAELSA 273


>gi|122939151 Rho GTPase activating protein 9 isoform 2 [Homo
           sapiens]
          Length = 640

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 71  EPLIQNDQEDEVDAWQKAEPHVCQ---QEHQVEALQQGQGPGETDA 113
           E L+Q+D E E+ AW +A   V +   +E+ +E    G GP E  A
Sbjct: 412 EFLLQSDHETELRAWHRALRTVIERLDRENPLELRLSGSGPAELSA 457


>gi|38788260 bromodomain PHD finger transcription factor isoform 2
            [Homo sapiens]
          Length = 2903

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 32   PDREIPSVSEMQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQEDEVDAWQKAEPH 91
            P    PS      T    PA  ++Q           +S  P      E +    Q ++P 
Sbjct: 2396 PQTAQPSAQPQPQTQPQSPAQPEVQTQPEVQTQTTVSSHVP-----SEAQPTHAQSSKPQ 2450

Query: 92   VCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHLGSCITTAPSQPTALAPLTS 150
            V  Q  Q ++  QGQ P    + +  R      + L     S + T  SQP  + P TS
Sbjct: 2451 VAAQS-QPQSNVQGQSPVRVQSPSQTRIRPSTPSQLSPGQQSQVQTTTSQPIPIQPHTS 2508


>gi|38788274 bromodomain PHD finger transcription factor isoform 1
            [Homo sapiens]
          Length = 2920

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 32   PDREIPSVSEMQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQEDEVDAWQKAEPH 91
            P    PS      T    PA  ++Q           +S  P      E +    Q ++P 
Sbjct: 2270 PQTAQPSAQPQPQTQPQSPAQPEVQTQPEVQTQTTVSSHVP-----SEAQPTHAQSSKPQ 2324

Query: 92   VCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHLGSCITTAPSQPTALAPLTS 150
            V  Q  Q ++  QGQ P    + +  R      + L     S + T  SQP  + P TS
Sbjct: 2325 VAAQS-QPQSNVQGQSPVRVQSPSQTRIRPSTPSQLSPGQQSQVQTTTSQPIPIQPHTS 2382


>gi|38327039 heat shock 70kDa protein 4 [Homo sapiens]
          Length = 840

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 27/117 (23%)

Query: 32  PDREIPSVSEMQATPSPCPANADLQGDVVEGVH----VGCAS----------QEPLI--Q 75
           PD  I   S  + TP    +++ ++  V   VH    V  AS          +EP+   Q
Sbjct: 455 PDPAIAQFSVQKVTPQSDGSSSKVKVKVRVNVHGIFSVSSASLVEVHKSEENEEPMETDQ 514

Query: 76  NDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAE---RRAGGKDASLVQ 129
           N +E+E     + EPHV +Q+ Q         P E  A + E    +AG KD  + Q
Sbjct: 515 NAKEEEKMQVDQEEPHVEEQQQQT--------PAENKAESEEMETSQAGSKDKKMDQ 563


>gi|11386181 H2.0-like homeobox [Homo sapiens]
          Length = 488

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 107 GPGETDATAAERRAGGKDASLVQHLGSCITTAPSQPTALAPLTSAPLTYKSLV 159
           G G+  A A E  AG   A+L  HLGS    A  Q  A +PL   P+   S V
Sbjct: 53  GVGDLGA-APEGLAGASAAALTAHLGSVHPHASFQAAARSPLRPTPVVAPSEV 104


>gi|46358366 zinc finger protein 746 [Homo sapiens]
          Length = 644

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 30  RSPDREIPSVSEMQATPS--PCPANADLQGDVVEGVHVGCASQEPLIQNDQEDEVDAWQK 87
           R P  +IP V    +  S  P PA   L     EG        E  +Q  Q   V+AW  
Sbjct: 158 RRPGPKIPDVPVDPSPGSGPPVPAPDLLMQIKQEG--------ELQLQEQQALGVEAWAA 209

Query: 88  AEPHVCQQEHQVEALQQGQGPGETDATA 115
            +P + ++   +  L  G G   TDAT+
Sbjct: 210 GQPDIGEEPWGLSQLDSGAGDISTDATS 237


>gi|239740950 PREDICTED: similar to mitogen-activated protein kinase
           8 interacting protein 1 [Homo sapiens]
          Length = 442

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 73  LIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAG-GKDASLVQHL 131
           ++Q D  D       AE      + +  A + G GP + ++       G G+     Q  
Sbjct: 1   MLQMDLIDATGDTPGAEDDEEDDDEERAARRPGAGPPKAESGQEPASRGQGQSQGQSQGP 60

Query: 132 GSCITTAPSQPTALAPLTSAPLTYKSLVNEILGK 165
           GS  T  P +PT L       L+  +L N  LGK
Sbjct: 61  GSGDTYRPKRPTTLNLFPQVQLSQDTLNNNSLGK 94


>gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo
           sapiens]
          Length = 1048

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 86  QKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHLGSCITTAPSQPTAL 145
           +K EP V +   QV+ L            A          ++       +   P +PT  
Sbjct: 91  EKQEPVVVRPYPQVQMLSTHHAVASATPVAVTAPPAHLTPAVPLSFSEGLMKPPPKPTMP 150

Query: 146 A-PLTSAPLTYKSLVNEILGKVNYDQGNNVPQQTLEKAEDISGGPG 190
           + P+  AP +  SL  ++ G+V     +++PQ +      ISG  G
Sbjct: 151 SRPIAPAPPSTLSLPPKVPGQVTVTMESSIPQASAIPVATISGQQG 196


>gi|225579127 Sin3A-associated protein, 130kDa isoform a [Homo
           sapiens]
          Length = 1083

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 86  QKAEPHVCQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHLGSCITTAPSQPTAL 145
           +K EP V +   QV+ L            A          ++       +   P +PT  
Sbjct: 91  EKQEPVVVRPYPQVQMLSTHHAVASATPVAVTAPPAHLTPAVPLSFSEGLMKPPPKPTMP 150

Query: 146 A-PLTSAPLTYKSLVNEILGKVNYDQGNNVPQQTLEKAEDISGGPG 190
           + P+  AP +  SL  ++ G+V     +++PQ +      ISG  G
Sbjct: 151 SRPIAPAPPSTLSLPPKVPGQVTVTMESSIPQASAIPVATISGQQG 196


>gi|44771211 mediator complex subunit 13-like [Homo sapiens]
          Length = 2210

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 7   CDLRPEDPEYQESWQRKSCRGKARSPDREIPSVSEMQATPSPCPANADLQGDVVEGVHVG 66
           C +RP +PE  E W         R P  +       +     C A  ++  +        
Sbjct: 619 CGIRPSNPESSEKWWH-----SYRLPPSDDAEFRPPELQGERCDAKMEVNSE-------S 666

Query: 67  CASQEPLIQNDQEDEVDAWQKAEPHVCQQEHQVEALQQGQGPGET 111
            A Q  L Q ++  ++  WQ  +P + Q  H ++ L   Q PG++
Sbjct: 667 TALQRLLAQPNKRFKI--WQDKQPQL-QPLHFLDPLPLSQQPGDS 708


>gi|42716289 erythrocyte membrane protein band 4.1 (elliptocytosis
           1, RH-linked) isoform 1 [Homo sapiens]
          Length = 775

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 20  WQRKSCRGKARSPDREIPSVSEMQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQE 79
           ++R + +  +RS D    +V     +P P  A A  QG V EG  +  ++++ ++   Q+
Sbjct: 496 FERTASKRASRSLDGAA-AVDSADRSPRPTSAPAITQGQVAEGGVLDASAKKTVVPKAQK 554

Query: 80  DEVDAWQKAEPHVCQQ 95
           + V A  K E    +Q
Sbjct: 555 ETVKAEVKKEDEPPEQ 570


>gi|42716291 erythrocyte membrane protein band 4.1 (elliptocytosis
           1, RH-linked) isoform 2 [Homo sapiens]
          Length = 641

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 20  WQRKSCRGKARSPDREIPSVSEMQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQE 79
           ++R + +  +RS D    +V     +P P  A A  QG V EG  +  ++++ ++   Q+
Sbjct: 322 FERTASKRASRSLDGAA-AVDSADRSPRPTSAPAITQGQVAEGGVLDASAKKTVVPKAQK 380

Query: 80  DEVDAWQKAEPHVCQQ 95
           + V A  K E    +Q
Sbjct: 381 ETVKAEVKKEDEPPEQ 396


>gi|4758274 erythrocyte membrane protein band 4.1 (elliptocytosis 1,
           RH-linked) isoform 3 [Homo sapiens]
          Length = 588

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 20  WQRKSCRGKARSPDREIPSVSEMQATPSPCPANADLQGDVVEGVHVGCASQEPLIQNDQE 79
           ++R + +  +RS D    +V     +P P  A A  QG V EG  +  ++++ ++   Q+
Sbjct: 322 FERTASKRASRSLDGAA-AVDSADRSPRPTSAPAITQGQVAEGGVLDASAKKTVVPKAQK 380

Query: 80  DEVDAWQKAEPHVCQQ 95
           + V A  K E    +Q
Sbjct: 381 ETVKAEVKKEDEPPEQ 396


>gi|38788219 zinc finger protein 428 [Homo sapiens]
          Length = 188

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 26/122 (21%)

Query: 12  EDPEYQESWQRKSCRGKARS-PDREIPSVSEMQATP------SP--------------CP 50
           +DPEY   ++ K   G  R  P R  P  ++  A P      SP              CP
Sbjct: 57  DDPEYDPGYKVKQRLGGGRGGPSRRAPRAAQPPAQPCQLCGRSPLGEAPPGTPPCRLCCP 116

Query: 51  ANADLQGDVVEGVHVGCASQEPLIQND-----QEDEVDAWQKAEPHVCQQEHQVEALQQG 105
           A A  +    EG  +G   +EP    +     +E+E +  ++   H  + E   + L + 
Sbjct: 117 ATAPQEAPAPEGRALGEEEEEPPRAGEGRPAGREEEEEEEEEGTYHCTECEDSFDNLGEL 176

Query: 106 QG 107
            G
Sbjct: 177 HG 178


>gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]
          Length = 993

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 101 ALQQGQGPGETDATAAERRAGGKDASLVQHLG-------SCITTAPSQPT 143
           A  + QGP  +  T ++R+ GG++A+     G       S  + APSQP+
Sbjct: 662 AATKPQGPATSTRTGSQRQEGGQEAAAPARQGRKKPAGKSLASEAPSQPS 711


>gi|239750735 PREDICTED: hypothetical protein XP_002347519 [Homo
           sapiens]
          Length = 426

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 7/75 (9%)

Query: 10  RPED--PEYQESWQRKSCRGKARSPDREIPSVSEMQATPSPCPANADLQGDVVEGVHVGC 67
           +P+D  PE QES+ ++ C+      +R  PS  +     S CP      GD    V  G 
Sbjct: 86  KPKDGVPEMQESFVQRRCQPSGTLLERSPPSALQGALRASGCPG-----GDTEVPVAKGR 140

Query: 68  ASQEPLIQNDQEDEV 82
              EP    D E+ V
Sbjct: 141 GRIEPSEHVDLEELV 155


>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
          Length = 4374

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 96   EHQVEALQQGQGPGETDATAAERRAGGKDASLVQHLGSCITTAPSQPTALAPLTSAP 152
            E++V   Q   G G +  T A         +         +T P+ PTA  P+TSAP
Sbjct: 3466 ENKVSEAQANSGSGASSTTTATSTTSTTTTTAA-------STTPTPPTAPTPVTSAP 3515


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.127    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,797,609
Number of Sequences: 37866
Number of extensions: 473765
Number of successful extensions: 1516
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1490
Number of HSP's gapped (non-prelim): 78
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.