Guide to the Human Genome
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Name: LOC100292214 Sequence: fasta or formatted (255aa) NCBI GI: 239756530
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         30           2
 C cysteine            3.5          9           1
 D aspartate           3.9         10           1
 E glutamate           5.5         14           1
 F phenylalanine       0.4          1           1
 G glycine            11.8         30           2
 H histidine           5.1         13           3
 I isoleucine          1.6          4           1
 K lysine              1.6          4           1
 L leucine             5.5         14           1
 M methionine          0.4          1           1
 N asparagine          1.2          3           1
 P proline            11.4         29           2
 Q glutamine           7.5         19           2
 R arginine            7.8         20           2
 S serine              6.7         17           2
 T threonine           3.5          9           1
 V valine              7.5         19           2
 W tryptophan          2.4          6           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288419          0.320   PREDICTED: hypothetical protein XP_002343501 
ZNF746                0.023   zinc finger protein 746 
LOC100291828          0.019   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.019   PREDICTED: hypothetical protein XP_002343509 
PDS5B                 0.017   PDS5, regulator of cohesion maintenance, homolog B [H...
SENP3                 0.017   SUMO1/sentrin/SMT3 specific protease 3 
LOC100292623          0.015   PREDICTED: hypothetical protein 
LOC348751             0.015   PREDICTED: hypothetical protein 
LOC100290254          0.015   PREDICTED: hypothetical protein XP_002347960 
LOC348751             0.015   PREDICTED: hypothetical protein isoform 4 
LOC348751             0.015   PREDICTED: hypothetical protein isoform 2 
MED1                  0.015   mediator complex subunit 1 
RELT                  0.013   RELT tumor necrosis factor receptor precursor 
RELT                  0.013   RELT tumor necrosis factor receptor precursor 
NOTCH1                0.013   notch1 preproprotein 
ADAMTS13              0.013   ADAM metallopeptidase with thrombospondin type 1 mot...
LOC100130982          0.013   PREDICTED: hypothetical protein 
LOC100130982          0.013   PREDICTED: hypothetical protein 
KANK3                 0.013   ankyrin repeat domain 47 
LOC100130982          0.013   PREDICTED: hypothetical protein 
MEPCE                 0.013   bin3, bicoid-interacting 3 
RPL15                 0.013   ribosomal protein L15 
APC2                  0.013   adenomatosis polyposis coli 2 
ARHGAP9               0.013   Rho GTPase activating protein 9 isoform 1 
ARHGAP9               0.013   Rho GTPase activating protein 9 isoform 3 
ARHGAP9               0.013   Rho GTPase activating protein 9 isoform 2 
POU3F2                0.011   POU domain, class 3, transcription factor 2 
CRX                   0.011   cone-rod homeobox protein 
KCNH3                 0.011   potassium voltage-gated channel, subfamily H (eag-re...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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