Guide to the Human Genome
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Name: LOC100289830 Sequence: fasta or formatted (426aa) NCBI GI: 239750735
Description:

PREDICTED: hypothetical protein XP_002347519

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         33           1
 C cysteine            7.3         31           2
 D aspartate           8.0         34           1
 E glutamate           2.8         12           2
 F phenylalanine       1.9          8           1
 G glycine             4.7         20           2
 H histidine           2.1          9           2
 I isoleucine          3.3         14           1
 K lysine              1.4          6           1
 L leucine            12.0         51           2
 M methionine          3.5         15           1
 N asparagine          0.7          3           1
 P proline             8.5         36           2
 Q glutamine           2.1          9           1
 R arginine            4.9         21           2
 S serine             17.1         73           3
 T threonine           5.9         25           1
 V valine              4.2         18           1
 W tryptophan          0.7          3           1
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347519 
LOC100288531          0.102   PREDICTED: hypothetical protein XP_002343337 
LOC727872             0.026   PREDICTED: hypothetical protein 
LOC729815             0.022   PREDICTED: hypothetical protein 
LOC729815             0.022   PREDICTED: hypothetical protein 
LOC100291627          0.014   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          0.014   PREDICTED: hypothetical protein XP_002348034 
GRN                   0.013   granulin precursor 
TNRC18                0.013   trinucleotide repeat containing 18 
SPEG                  0.013   SPEG complex locus 
NLRP4                 0.012   NLR family, pyrin domain containing 4 
MDFI                  0.012   MyoD family inhibitor 
CHD9                  0.012   chromodomain helicase DNA binding protein 9 
LOC100293112          0.012   PREDICTED: hypothetical protein 
LOC100131251          0.012   PREDICTED: hypothetical protein 
LOC100288817          0.012   PREDICTED: hypothetical protein 
LOC100131251          0.012   PREDICTED: hypothetical protein 
LOC100288817          0.012   PREDICTED: hypothetical protein XP_002343307 
LOC100289342          0.011   PREDICTED: hypothetical protein XP_002342912 
KRTAP5-9              0.011   keratin associated protein 5-9 
MYST3                 0.011   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.011   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.011   MYST histone acetyltransferase (monocytic leukemia)...
FBXL20                0.011   F-box and leucine-rich repeat protein 20 
APC2                  0.009   adenomatosis polyposis coli 2 
NRG1                  0.009   neuregulin 1 isoform GGF2 
INPPL1                0.009   inositol polyphosphate phosphatase-like 1 
PODXL                 0.008   podocalyxin-like isoform 2 precursor 
PODXL                 0.008   podocalyxin-like isoform 1 precursor 
AHNAK2                0.008   AHNAK nucleoprotein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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