Guide to the Human Genome
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Name: LOC100294344 Sequence: fasta or formatted (442aa) NCBI GI: 239740950
Description:

PREDICTED: similar to mitogen-activated protein kinase 8 interacting protein 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         31           2
 C cysteine            1.8          8           1
 D aspartate           6.8         30           3
 E glutamate           8.4         37           2
 F phenylalanine       5.4         24           2
 G glycine             5.9         26           1
 H histidine           3.8         17           2
 I isoleucine          3.2         14           2
 K lysine              5.2         23           2
 L leucine             6.6         29           2
 M methionine          1.4          6           1
 N asparagine          3.2         14           3
 P proline             6.3         28           2
 Q glutamine           5.9         26           2
 R arginine            5.9         26           2
 S serine              8.8         39           3
 T threonine           4.5         20           2
 V valine              5.9         26           2
 W tryptophan          0.5          2           1
 Y tyrosine            3.6         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to mitogen-activated protein kin... 
LOC644253             0.919   PREDICTED: similar to mitogen-activated protein kin...
MAPK8IP1              0.699   mitogen-activated protein kinase 8 interacting protei...
MAPK8IP2              0.370   mitogen-activated protein kinase 8 interacting protei...
MAPK8IP2              0.370   mitogen-activated protein kinase 8 interacting protei...
GULP1                 0.041   GULP, engulfment adaptor PTB domain containing 1 [Hom...
NOS1AP                0.020   nitric oxide synthase 1 (neuronal) adaptor protein i...
ANKS1B                0.019   cajalin 2 isoform b 
ANKS1B                0.019   cajalin 2 isoform a 
ANKS1B                0.019   cajalin 2 isoform c 
ANKS1A                0.019   ankyrin repeat and sterile alpha motif domain conta...
SGEF                  0.017   Src homology 3 domain-containing guanine nucleotide...
SH3RF1                0.016   SH3 domain containing ring finger 1 
NUMBL                 0.016   numb homolog (Drosophila)-like 
SH3RF3                0.015   SH3 domain containing ring finger 3 
MESP2                 0.014   mesoderm posterior 2 homolog 
ARHGEF5               0.014   rho guanine nucleotide exchange factor 5 
NUMB                  0.014   numb homolog isoform 4 
NUMB                  0.014   numb homolog isoform 3 
APBB2                 0.012   amyloid beta A4 precursor protein-binding, family B,...
SORBS3                0.012   sorbin and SH3 domain containing 3 isoform 1 
SORBS3                0.012   sorbin and SH3 domain containing 3 isoform 2 
ESF1                  0.012   ABT1-associated protein 
SH3KBP1               0.011   SH3-domain kinase binding protein 1 isoform b 
SH3KBP1               0.011   SH3-domain kinase binding protein 1 isoform a 
NUMB                  0.011   numb homolog isoform 2 
NUMB                  0.011   numb homolog isoform 1 
UBASH3A               0.011   ubiquitin associated and SH3 domain containing, A sh...
UBASH3A               0.011   ubiquitin associated and SH3 domain containing, A lon...
SRRM2                 0.011   splicing coactivator subunit SRm300 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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