Guide to the Human Genome
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Name: LOC642423 Sequence: fasta or formatted (131aa) NCBI GI: 239745297
Description:

PREDICTED: similar to hCG2004312

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         17           2
 C cysteine            2.3          3           2
 D aspartate           2.3          3           1
 E glutamate           9.9         13           2
 F phenylalanine       3.1          4           2
 G glycine            15.3         20           2
 H histidine           3.8          5           1
 I isoleucine          0.8          1           1
 K lysine              3.8          5           2
 L leucine             4.6          6           1
 M methionine          2.3          3           1
 N asparagine          1.5          2           1
 P proline             7.6         10           1
 Q glutamine           8.4         11           1
 R arginine            6.1          8           2
 S serine              7.6         10           2
 T threonine           2.3          3           1
 V valine              5.3          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2004312 
LOC727751             0.996   PREDICTED: similar to cis-Golgi matrix protein GM13...
LOC100131930          0.971   PREDICTED: similar to hCG2004312 isoform 1 
LOC100288367          0.971   PREDICTED: hypothetical protein XP_002343419 isofor...
LOC100131930          0.510   PREDICTED: similar to hCG2004312 isoform 2 
LOC100288367          0.510   PREDICTED: hypothetical protein XP_002343418 isofor...
GOLGA2                0.355   Golgi autoantigen, golgin subfamily a, 2 
LOC728477             0.331   PREDICTED: similar to hCG27445 
LOC728477             0.331   PREDICTED: similar to hCG27445 
LOC728477             0.302   PREDICTED: similar to hCG27445 
LOC100131297          0.302   PREDICTED: similar to Putative golgin subfamily A m...
LOC100131297          0.302   PREDICTED: similar to Putative golgin subfamily A m...
GOLGA2L1              0.184   golgi autoantigen, golgin subfamily a, 2-like 1 [Hom...
GOLGA8B               0.180   golgi autoantigen, golgin subfamily a, 8B 
GOLGA8A               0.180   golgi autoantigen, golgin subfamily a, 8A 
LOC100292334          0.171   PREDICTED: similar to GOLGA8B protein, partial [Hom...
GOLGA8E               0.159   golgi autoantigen, golgin subfamily a, 8E 
GOLGA8G               0.155   golgi autoantigen, golgin subfamily a, 8G 
GOLGA8F               0.122   golgi autoantigen, golgin subfamily a, 8F 
LOC653125             0.118   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC390561             0.110   PREDICTED: similar to hect domain and RLD 2 
LOC653061             0.110   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC390561             0.106   PREDICTED: similar to hect domain and RLD 2 
LOC728080             0.102   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.102   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.102   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.102   PREDICTED: Golgin subfamily A member 8-like protein...
LOC728498             0.098   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.098   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.090   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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