Guide to the Human Genome
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Name: LOC100131297 Sequence: fasta or formatted (110aa) NCBI GI: 239745322
Description:

PREDICTED: similar to Putative golgin subfamily A member 2-like protein 5

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [110aa] PREDICTED: similar to Putative golgin subfamily A member 2-like p...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         14           3
 C cysteine            4.5          5           2
 D aspartate           1.8          2           1
 E glutamate          10.0         11           3
 F phenylalanine       1.8          2           1
 G glycine             4.5          5           2
 H histidine           5.5          6           1
 I isoleucine          5.5          6           2
 K lysine              3.6          4           1
 L leucine            10.9         12           2
 M methionine          1.8          2           1
 N asparagine          1.8          2           1
 P proline             4.5          5           1
 Q glutamine           7.3          8           2
 R arginine            4.5          5           1
 S serine              7.3          8           2
 T threonine           2.7          3           1
 V valine              6.4          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative golgin subfamily A m... 
LOC100131297          1.000   PREDICTED: similar to Putative golgin subfamily A m...
GOLGA2                0.485   Golgi autoantigen, golgin subfamily a, 2 
LOC100131930          0.394   PREDICTED: similar to hCG2004312 isoform 2 
LOC100288367          0.394   PREDICTED: hypothetical protein XP_002343418 isofor...
LOC100131930          0.389   PREDICTED: similar to hCG2004312 isoform 1 
LOC100288367          0.389   PREDICTED: hypothetical protein XP_002343419 isofor...
LOC642423             0.374   PREDICTED: similar to hCG2004312 
LOC727751             0.369   PREDICTED: similar to cis-Golgi matrix protein GM13...
LOC728477             0.197   PREDICTED: similar to hCG27445 
LOC728477             0.197   PREDICTED: similar to hCG27445 
LOC728477             0.187   PREDICTED: similar to hCG27445 
GOLGA2L1              0.152   golgi autoantigen, golgin subfamily a, 2-like 1 [Hom...
LOC390561             0.061   PREDICTED: similar to hect domain and RLD 2 
LOC100292334          0.056   PREDICTED: similar to GOLGA8B protein, partial [Hom...
GOLGA8B               0.051   golgi autoantigen, golgin subfamily a, 8B 
GOLGA8A               0.051   golgi autoantigen, golgin subfamily a, 8A 
LOC653061             0.051   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC390561             0.045   PREDICTED: similar to hect domain and RLD 2 
GOLGA8E               0.045   golgi autoantigen, golgin subfamily a, 8E 
GOLGA8G               0.035   golgi autoantigen, golgin subfamily a, 8G 
LOC728498             0.030   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.030   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.030   PREDICTED: Golgin subfamily A member 8-like protein...
LOC390561             0.025   PREDICTED: similar to hect domain and RLD 2 
LOC728498             0.025   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.025   PREDICTED: Golgin subfamily A member 8-like protein...
LOC728080             0.025   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.025   PREDICTED: similar to Golgin subfamily A member 8-l...
CCDC57                0.025   coiled-coil domain containing 57 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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