Guide to the Human Genome
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Name: LOC728477 Sequence: fasta or formatted (421aa) NCBI GI: 239745318
Description:

PREDICTED: similar to hCG27445

Not currently referenced in the text

Other entries for this name:
alt prot {421aa} PREDICTED: similar to hCG27445
alt prot {212aa} PREDICTED: similar to hCG27445
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         33           3
 C cysteine            1.4          6           2
 D aspartate           4.0         17           2
 E glutamate           8.8         37           4
 F phenylalanine       3.6         15           2
 G glycine             7.1         30           2
 H histidine           2.6         11           2
 I isoleucine          1.9          8           1
 K lysine              5.0         21           2
 L leucine             9.3         39           2
 M methionine          2.9         12           1
 N asparagine          2.6         11           1
 P proline             6.9         29           2
 Q glutamine          10.9         46           3
 R arginine            5.2         22           1
 S serine              6.7         28           2
 T threonine           5.2         22           2
 V valine              4.8         20           1
 W tryptophan          1.9          8           1
 Y tyrosine            1.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG27445 
LOC728477             0.998   PREDICTED: similar to hCG27445 
GOLGA2                0.330   Golgi autoantigen, golgin subfamily a, 2 
LOC728477             0.249   PREDICTED: similar to hCG27445 
GOLGA6D               0.134   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.134   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6B               0.132   golgi autoantigen, golgin subfamily a, 6B 
GOLGA6                0.132   golgi autoantigen, golgin subfamily a, 6 
LOC100131930          0.129   PREDICTED: similar to hCG2004312 isoform 1 
LOC100288367          0.129   PREDICTED: hypothetical protein XP_002343419 isofor...
LOC100131930          0.118   PREDICTED: similar to hCG2004312 isoform 2 
LOC100288367          0.118   PREDICTED: hypothetical protein XP_002343418 isofor...
LOC642423             0.097   PREDICTED: similar to hCG2004312 
LOC727751             0.096   PREDICTED: similar to cis-Golgi matrix protein GM13...
LOC100292334          0.087   PREDICTED: similar to GOLGA8B protein, partial [Hom...
LOC653061             0.083   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA8B               0.083   golgi autoantigen, golgin subfamily a, 8B 
GOLGA8A               0.083   golgi autoantigen, golgin subfamily a, 8A 
LOC390561             0.074   PREDICTED: similar to hect domain and RLD 2 
LOC390561             0.067   PREDICTED: similar to hect domain and RLD 2 
LOC653720             0.067   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.066   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653061             0.066   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.065   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.061   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.061   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.061   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.060   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.060   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653125             0.059   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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