Search of human proteins with 239745256

Search of human proteins with 239745256

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens]
         (450 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens]          927   0.0  
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear...   369   e-102
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear...   369   e-102
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil...   250   2e-66
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil...   206   3e-53
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami...   163   3e-40
gi|6912604 acidic nuclear phosphoprotein 32C [Homo sapiens]           162   8e-40
gi|21071028 acidic nuclear phosphoprotein 32D [Homo sapiens]          143   3e-34
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam...   139   5e-33
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam...    83   6e-16
gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo...    45   1e-04
gi|15529980 leucine rich repeat containing 46 [Homo sapiens]           41   0.002
gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens]       40   0.004
gi|163965366 nascent polypeptide-associated complex alpha subuni...    40   0.004
gi|167555127 CD180 molecule [Homo sapiens]                             40   0.006
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof...    40   0.006
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof...    40   0.006
gi|193083139 leucine rich repeat containing 32 precursor [Homo s...    39   0.007
gi|5031707 leucine rich repeat containing 32 precursor [Homo sap...    39   0.007
gi|31621309 leucine rich repeat containing 6 [Homo sapiens]            39   0.010
gi|194272228 leucine rich repeat containing 48 isoform b [Homo s...    38   0.021
gi|194272226 leucine rich repeat containing 48 isoform b [Homo s...    38   0.021
gi|194272224 leucine rich repeat containing 48 isoform a [Homo s...    38   0.021
gi|194272222 leucine rich repeat containing 48 isoform a [Homo s...    38   0.021
gi|87298937 centrosomal protein 110kDa [Homo sapiens]                  38   0.021
gi|39930571 leucine rich repeat containing 56 [Homo sapiens]           37   0.037
gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens]      37   0.037
gi|40217823 SLIT and NTRK-like family, member 5 [Homo sapiens]         37   0.037
gi|66472382 nischarin [Homo sapiens]                                   37   0.048
gi|153945728 microtubule-associated protein 1B [Homo sapiens]          36   0.062

>gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens]
          Length = 450

 Score =  927 bits (2397), Expect = 0.0
 Identities = 450/450 (100%), Positives = 450/450 (100%)

Query: 1   MTTRPQAIGQGLGPCWPISDSAHPRPGAGDGASGSAARVREHVLDNCKSNDWKIESLTAE 60
           MTTRPQAIGQGLGPCWPISDSAHPRPGAGDGASGSAARVREHVLDNCKSNDWKIESLTAE
Sbjct: 1   MTTRPQAIGQGLGPCWPISDSAHPRPGAGDGASGSAARVREHVLDNCKSNDWKIESLTAE 60

Query: 61  FVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKL 120
           FVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKL
Sbjct: 61  FVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKL 120

Query: 121 KDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA 180
           KDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA
Sbjct: 121 KDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA 180

Query: 181 QLLADPWGKEYHTNNAPLLLRSPAWPPEPSIRPQEQDYEPKVLHPLFSALDHLVEQKRNR 240
           QLLADPWGKEYHTNNAPLLLRSPAWPPEPSIRPQEQDYEPKVLHPLFSALDHLVEQKRNR
Sbjct: 181 QLLADPWGKEYHTNNAPLLLRSPAWPPEPSIRPQEQDYEPKVLHPLFSALDHLVEQKRNR 240

Query: 241 EPDCAEIHPSAGVVKGTVAEITFGCSLLGPEPVQIQYKSMTKILPILNKSWSQGPTTRYP 300
           EPDCAEIHPSAGVVKGTVAEITFGCSLLGPEPVQIQYKSMTKILPILNKSWSQGPTTRYP
Sbjct: 241 EPDCAEIHPSAGVVKGTVAEITFGCSLLGPEPVQIQYKSMTKILPILNKSWSQGPTTRYP 300

Query: 301 CESLRGAATEHLLPNGRGGKAVTIDIKSTTVAPAPNTMQKSDPGEGEEGKEKSNLICPRS 360
           CESLRGAATEHLLPNGRGGKAVTIDIKSTTVAPAPNTMQKSDPGEGEEGKEKSNLICPRS
Sbjct: 301 CESLRGAATEHLLPNGRGGKAVTIDIKSTTVAPAPNTMQKSDPGEGEEGKEKSNLICPRS 360

Query: 361 RRPKPEQLYEAEELGNIQMTPGESDEAGNPSQTPYLRPLQLPPGCTPFLILVEPPSQPHN 420
           RRPKPEQLYEAEELGNIQMTPGESDEAGNPSQTPYLRPLQLPPGCTPFLILVEPPSQPHN
Sbjct: 361 RRPKPEQLYEAEELGNIQMTPGESDEAGNPSQTPYLRPLQLPPGCTPFLILVEPPSQPHN 420

Query: 421 PFSHQQLLVPISAPIKAFAISAPSPWDKPS 450
           PFSHQQLLVPISAPIKAFAISAPSPWDKPS
Sbjct: 421 PFSHQQLLVPISAPIKAFAISAPSPWDKPS 450


>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
           phosphoprotein 32 family, member B [Homo sapiens]
          Length = 272

 Score =  369 bits (947), Expect = e-102
 Identities = 181/182 (99%), Positives = 182/182 (100%)

Query: 1   MTTRPQAIGQGLGPCWPISDSAHPRPGAGDGASGSAARVREHVLDNCKSNDWKIESLTAE 60
           MTTRPQAIGQGLGPCWPISDSAHPRPGAGDGASGSAARVREHVLDNCKSNDWKIESLTAE
Sbjct: 1   MTTRPQAIGQGLGPCWPISDSAHPRPGAGDGASGSAARVREHVLDNCKSNDWKIESLTAE 60

Query: 61  FVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKL 120
           FVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKL
Sbjct: 61  FVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKL 120

Query: 121 KDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA 180
           KDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA
Sbjct: 121 KDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA 180

Query: 181 QL 182
           Q+
Sbjct: 181 QV 182


>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
           phosphoprotein 32 family, member B [Homo sapiens]
          Length = 272

 Score =  369 bits (947), Expect = e-102
 Identities = 181/182 (99%), Positives = 182/182 (100%)

Query: 1   MTTRPQAIGQGLGPCWPISDSAHPRPGAGDGASGSAARVREHVLDNCKSNDWKIESLTAE 60
           MTTRPQAIGQGLGPCWPISDSAHPRPGAGDGASGSAARVREHVLDNCKSNDWKIESLTAE
Sbjct: 1   MTTRPQAIGQGLGPCWPISDSAHPRPGAGDGASGSAARVREHVLDNCKSNDWKIESLTAE 60

Query: 61  FVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKL 120
           FVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKL
Sbjct: 61  FVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKL 120

Query: 121 KDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA 180
           KDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA
Sbjct: 121 KDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA 180

Query: 181 QL 182
           Q+
Sbjct: 181 QV 182


>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
           member B [Homo sapiens]
          Length = 251

 Score =  250 bits (639), Expect = 2e-66
 Identities = 128/146 (87%), Positives = 133/146 (91%)

Query: 37  ARVREHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRI 96
           A VRE VLDNCKSND KIE LTAEFVNLEFL LINVGLIS+SNLPKLPKLKK  LSENRI
Sbjct: 17  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRI 76

Query: 97  FGGLNMSAEKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVF 156
           FGGL+M AEKLPNLTHLNLSG KLKDISTLEPLKKLECLKSLDLFNCEV NLNDY+ESVF
Sbjct: 77  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 136

Query: 157 KLLPQLTCLDTYDPEDQEAPDSDAQL 182
           KLLPQLT LD YD EDQEAPDSDA++
Sbjct: 137 KLLPQLTYLDGYDREDQEAPDSDAEV 162


>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
           member A [Homo sapiens]
          Length = 249

 Score =  206 bits (524), Expect = 3e-53
 Identities = 104/143 (72%), Positives = 120/143 (83%)

Query: 39  VREHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFG 98
           V+E VLDN +SN+ K+E LT EF  LEFL  INVGL SI+NLPKL KLKK  LS+NR+ G
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSG 78

Query: 99  GLNMSAEKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKL 158
           GL + AEK PNLTHLNLSG K+KD+ST+EPLKKLE LKSLDLFNCEV NLNDY+E+VFKL
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138

Query: 159 LPQLTCLDTYDPEDQEAPDSDAQ 181
           LPQLT LD YD +D+EAPDSDA+
Sbjct: 139 LPQLTYLDGYDRDDKEAPDSDAE 161


>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
           member E isoform 1 [Homo sapiens]
          Length = 268

 Score =  163 bits (412), Expect = 3e-40
 Identities = 93/185 (50%), Positives = 119/185 (64%), Gaps = 6/185 (3%)

Query: 35  SAARVREHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSEN 94
           S   V E VLDNC   + +IE L   F  LEFL + NV L S++ LP L KL+K  LS+N
Sbjct: 15  SPEEVTELVLDNCLCVNGEIEGLNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSDN 74

Query: 95  RIFGGLNMSAEKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQES 154
            I GGL + AEK PNLT+LNLSG K+KD+ST+E L+ L+ LKSLDLFNCE+ NL DY+ES
Sbjct: 75  IISGGLEVLAEKCPNLTYLNLSGNKIKDLSTVEALQNLKNLKSLDLFNCEITNLEDYRES 134

Query: 155 VFKLLPQLTCLDTYDPEDQEAPDSDAQLLADPWGKEYHTNNAPLLLRSPAWPPEPSIRPQ 214
           +F+LL Q+T LD +D ED EAPDS+ +   D  G E           + A PPE     +
Sbjct: 135 IFELLQQITYLDGFDQEDNEAPDSEEE--DDEDGDEDDEEEE----ENEAGPPEGYEEEE 188

Query: 215 EQDYE 219
           E++ E
Sbjct: 189 EEEEE 193


>gi|6912604 acidic nuclear phosphoprotein 32C [Homo sapiens]
          Length = 234

 Score =  162 bits (409), Expect = 8e-40
 Identities = 91/143 (63%), Positives = 109/143 (76%), Gaps = 4/143 (2%)

Query: 39  VREHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFG 98
           V+E  LDN +SN+ K+E+LT EF  LEFL  IN GL SIS+LPKL KL+K  L   R+ G
Sbjct: 19  VKELALDNSRSNEGKLEALTDEFEELEFLSKINGGLTSISDLPKL-KLRKLEL---RVSG 74

Query: 99  GLNMSAEKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKL 158
           GL + AEK PNLTHL LSG K+KD+ST+EPLK+LE LKSLDLFNCEV NLNDY E+VFKL
Sbjct: 75  GLEVLAEKCPNLTHLYLSGNKIKDLSTIEPLKQLENLKSLDLFNCEVTNLNDYGENVFKL 134

Query: 159 LPQLTCLDTYDPEDQEAPDSDAQ 181
           L QLT LD+   + +EAP SD +
Sbjct: 135 LLQLTYLDSCYWDHKEAPYSDIE 157


>gi|21071028 acidic nuclear phosphoprotein 32D [Homo sapiens]
          Length = 131

 Score =  143 bits (361), Expect = 3e-34
 Identities = 74/113 (65%), Positives = 86/113 (76%)

Query: 39  VREHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFG 98
           V+E  LDN +SN+ K+E LT EF  LE L  IN+GL SI+NLPKL KLKK  LS NR   
Sbjct: 19  VKELFLDNSQSNEGKLEGLTDEFEELELLNTINIGLTSIANLPKLNKLKKLELSSNRASV 78

Query: 99  GLNMSAEKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDY 151
           GL + AEK PNL HLNLSG K+KD+ST+EPLKKLE L+SLDLF CEV NLN+Y
Sbjct: 79  GLEVLAEKCPNLIHLNLSGNKIKDLSTIEPLKKLENLESLDLFTCEVTNLNNY 131


>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
           family, member E isoform 3 [Homo sapiens]
          Length = 220

 Score =  139 bits (350), Expect = 5e-33
 Identities = 77/151 (50%), Positives = 101/151 (66%), Gaps = 6/151 (3%)

Query: 69  LINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKLKDISTLEP 128
           + NV L S++ LP L KL+K  LS+N I GGL + AEK PNLT+LNLSG K+KD+ST+E 
Sbjct: 1   MANVELSSLARLPSLNKLRKLELSDNIISGGLEVLAEKCPNLTYLNLSGNKIKDLSTVEA 60

Query: 129 LKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDAQLLADPWG 188
           L+ L+ LKSLDLFNCE+ NL DY+ES+F+LL Q+T LD +D ED EAPDS+ +   D  G
Sbjct: 61  LQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEEE--DDEDG 118

Query: 189 KEYHTNNAPLLLRSPAWPPEPSIRPQEQDYE 219
            E           + A PPE     +E++ E
Sbjct: 119 DEDDEEEE----ENEAGPPEGYEEEEEEEEE 145


>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
           family, member E isoform 2 [Homo sapiens]
          Length = 227

 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 64/185 (34%), Positives = 86/185 (46%), Gaps = 47/185 (25%)

Query: 35  SAARVREHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSEN 94
           S   V E VLDNC   + +IE L   F  LEFL + N   + +S+L              
Sbjct: 15  SPEEVTELVLDNCLCVNGEIEGLNDTFKELEFLSMAN---VELSSLA------------- 58

Query: 95  RIFGGLNMSAEKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQES 154
                      +LP+L  L                + L+ LKSLDLFNCE+ NL DY+ES
Sbjct: 59  -----------RLPSLNKLRK--------------QNLKNLKSLDLFNCEITNLEDYRES 93

Query: 155 VFKLLPQLTCLDTYDPEDQEAPDSDAQLLADPWGKEYHTNNAPLLLRSPAWPPEPSIRPQ 214
           +F+LL Q+T LD +D ED EAPDS+ +   D  G E           + A PPE     +
Sbjct: 94  IFELLQQITYLDGFDQEDNEAPDSEEE--DDEDGDEDDEEEE----ENEAGPPEGYEEEE 147

Query: 215 EQDYE 219
           E++ E
Sbjct: 148 EEEEE 152


>gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo
           sapiens]
          Length = 255

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 32/113 (28%), Positives = 52/113 (46%)

Query: 54  IESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHL 113
           IE+L A     + +   +  +  +   P L +LK  +++ NRI        + LP LT L
Sbjct: 34  IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTEL 93

Query: 114 NLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLD 166
            L+   L ++  L+PL  L+ L  L +    V N   Y+  V   +PQ+  LD
Sbjct: 94  ILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLD 146


>gi|15529980 leucine rich repeat containing 46 [Homo sapiens]
          Length = 321

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 35/157 (22%)

Query: 64  LEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKLKDI 123
           L+ +RL   G+ +I NL  L  L    L  N+I    N++   +P+L  L+L+G +++ +
Sbjct: 46  LQTVRLDREGITTIRNLEGLQNLHSLYLQGNKIQQIENLAC--IPSLRFLSLAGNQIRQV 103

Query: 124 STLEPLKKLECLKSLDLFN--CEVINLND--------------------YQESVFKLLPQ 161
              E L  L CL+ LDL     E + L++                    Y+E V + LP 
Sbjct: 104 ---ENLLDLPCLQFLDLSENLIETLKLDEFPQSLLILNLSGNSCTNQDGYRELVTEALPL 160

Query: 162 LTCLD--------TYDPEDQEAPDSDAQLLADPWGKE 190
           L  LD          D ED+ + D +   L+ P+  E
Sbjct: 161 LLDLDGQPVVERWISDEEDEASSDEEFPELSGPFCSE 197


>gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens]
          Length = 619

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 83  LPKLKKFVLSENRIFGGLNMSA--EKLPNLTHLNLSGKKLKDISTLEPLK--KLECLKSL 138
           +P+L    LS NR++   +MS+  +K PNL  LNLSG +LK    L+ +K  KLE L   
Sbjct: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 323

Query: 139 DLFNCEVI-NLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDAQLLADPW-GKEYHTNNA 196
               C+   + + Y  ++ +  P+L  LD ++     A D +A     P  G  + T N 
Sbjct: 324 GNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENL 383

Query: 197 PLLL 200
             L+
Sbjct: 384 KSLV 387


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 27/180 (15%)

Query: 285  PILNKSWSQGPTTRYPCESLRGAATEHLLPNGRGGKAVTIDIKSTTVAPAPNTMQKSDPG 344
            PI+     +GP T+    +      +    NG  G         +TVAPAP    + D  
Sbjct: 1694 PIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPL-------STVAPAPLLPVQKDSS 1746

Query: 345  EGEEGKEKSN-----LICPRSRRPKP------EQLYEAEELGNIQMTPGESDEAG-NPSQ 392
            +  +GK+ S+     L  P S+   P      E++    E  ++   P         PS 
Sbjct: 1747 KTAKGKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLPLAPSP 1806

Query: 393  TPYLRPLQLPPGCTPFLILVEPPSQPHNPFSHQQLL-----VPIS--APIKAFAISAPSP 445
             P L P Q     +P L+L E PS+P  P    +LL      PIS   P ++  ++ P+P
Sbjct: 1807 VPTLPPKQQFLPSSPGLVL-ESPSKPLAPADEDELLPLIPPEPISGGVPFQSVLVNMPTP 1865


>gi|167555127 CD180 molecule [Homo sapiens]
          Length = 661

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 30/133 (22%)

Query: 61  FVNLEFLRLINVGLISI-SNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSG-- 117
           F  L+ L L    L  + S +  L  LKK VLS N       +SA   P+LTHL + G  
Sbjct: 297 FTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 356

Query: 118 ----------KKLKDISTLE--------------PLKKLECLKSLDLFNCEVINLNDYQE 153
                     +KL ++ TL+               LK L  L++L+L + E + L   Q 
Sbjct: 357 KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL---QS 413

Query: 154 SVFKLLPQLTCLD 166
             FK  PQL  LD
Sbjct: 414 QAFKECPQLELLD 426


>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform
           1 [Homo sapiens]
          Length = 1722

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 56  SLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNL 115
           S  AE  NL+FL L   GL S+ +L    KLK     EN I     +  E L NL  + L
Sbjct: 812 STLAECTNLQFLSLRRCGLTSLHSLSNCKKLKYIDAQENHIEA---IECENLENLCVVLL 868

Query: 116 SGKKLKDISTLEPLKKLECLK 136
           +  +L  +  L+    ++CL+
Sbjct: 869 NKNQLTSLHGLDGCTNIQCLE 889


>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform
           2 [Homo sapiens]
          Length = 1336

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 56  SLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNL 115
           S  AE  NL+FL L   GL S+ +L    KLK     EN I     +  E L NL  + L
Sbjct: 812 STLAECTNLQFLSLRRCGLTSLHSLSNCKKLKYIDAQENHIEA---IECENLENLCVVLL 868

Query: 116 SGKKLKDISTLEPLKKLECLK 136
           +  +L  +  L+    ++CL+
Sbjct: 869 NKNQLTSLHGLDGCTNIQCLE 889


>gi|193083139 leucine rich repeat containing 32 precursor [Homo
           sapiens]
          Length = 662

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 53/184 (28%), Positives = 75/184 (40%), Gaps = 18/184 (9%)

Query: 31  GASGSAARVREHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISISN--LPKLPKLKK 88
           G  G   RV    L         +E L  E  +L  L L    L  ++      +P L++
Sbjct: 118 GGLGPLPRVTSLDLSGNSLYSGLLERLLGEAPSLHTLSLAENSLTRLTRHTFRDMPALEQ 177

Query: 89  FVLSENRIFGGLNMSAEKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDLF--NCEVI 146
             L  N +    + + E LP LTHLNLS   L  IS       L+ L+ LDL   + E  
Sbjct: 178 LDLHSNVLMDIEDGAFEGLPRLTHLNLSRNSLTCISDF----SLQQLRVLDLSCNSIEAF 233

Query: 147 NLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDAQLLADPWGKEYHTNNAPLLLRSPAWP 206
                 ++ F    QLT LD  + +    PD    L A P  +  + N +  L+R P  P
Sbjct: 234 QTASQPQAEF----QLTWLDLRENKLLHFPD----LAALP--RLIYLNLSNNLIRLPTGP 283

Query: 207 PEPS 210
           P+ S
Sbjct: 284 PQDS 287


>gi|5031707 leucine rich repeat containing 32 precursor [Homo
           sapiens]
          Length = 662

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 53/184 (28%), Positives = 75/184 (40%), Gaps = 18/184 (9%)

Query: 31  GASGSAARVREHVLDNCKSNDWKIESLTAEFVNLEFLRLINVGLISISN--LPKLPKLKK 88
           G  G   RV    L         +E L  E  +L  L L    L  ++      +P L++
Sbjct: 118 GGLGPLPRVTSLDLSGNSLYSGLLERLLGEAPSLHTLSLAENSLTRLTRHTFRDMPALEQ 177

Query: 89  FVLSENRIFGGLNMSAEKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDLF--NCEVI 146
             L  N +    + + E LP LTHLNLS   L  IS       L+ L+ LDL   + E  
Sbjct: 178 LDLHSNVLMDIEDGAFEGLPRLTHLNLSRNSLTCISDF----SLQQLRVLDLSCNSIEAF 233

Query: 147 NLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDAQLLADPWGKEYHTNNAPLLLRSPAWP 206
                 ++ F    QLT LD  + +    PD    L A P  +  + N +  L+R P  P
Sbjct: 234 QTASQPQAEF----QLTWLDLRENKLLHFPD----LAALP--RLIYLNLSNNLIRLPTGP 283

Query: 207 PEPS 210
           P+ S
Sbjct: 284 PQDS 287


>gi|31621309 leucine rich repeat containing 6 [Homo sapiens]
          Length = 466

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 63  NLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKLKD 122
           +L+ L L N  +  I N+ KL KL+   L+ N I    N+  E    L  L+L+   + +
Sbjct: 45  DLKILYLQNNLIGKIENVSKLKKLEYLNLALNNIEKIENL--EGCEELAKLDLTVNFIGE 102

Query: 123 ISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQE 174
           +S+++ L+    LK L L      + + Y+E V   LPQL  LD  + E  E
Sbjct: 103 LSSIKNLQHNIHLKELFLMGNPCASFDHYREFVVATLPQLKWLDGKEIEPSE 154


>gi|194272228 leucine rich repeat containing 48 isoform b [Homo
           sapiens]
          Length = 457

 Score = 37.7 bits (86), Expect = 0.021
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 53  KIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTH 112
           KIE L     +L +L L    + +I  L  L  L+   L  NRI      S + L  L  
Sbjct: 79  KIEGLE-NLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRI--SKIDSLDALVKLQV 135

Query: 113 LNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLD 166
           L+L   ++ ++  +  L++ +CL++L L    +    DY+  +   LP L  LD
Sbjct: 136 LSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLD 189


>gi|194272226 leucine rich repeat containing 48 isoform b [Homo
           sapiens]
          Length = 457

 Score = 37.7 bits (86), Expect = 0.021
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 53  KIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTH 112
           KIE L     +L +L L    + +I  L  L  L+   L  NRI      S + L  L  
Sbjct: 79  KIEGLE-NLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRI--SKIDSLDALVKLQV 135

Query: 113 LNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLD 166
           L+L   ++ ++  +  L++ +CL++L L    +    DY+  +   LP L  LD
Sbjct: 136 LSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLD 189


>gi|194272224 leucine rich repeat containing 48 isoform a [Homo
           sapiens]
          Length = 523

 Score = 37.7 bits (86), Expect = 0.021
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 53  KIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTH 112
           KIE L     +L +L L    + +I  L  L  L+   L  NRI      S + L  L  
Sbjct: 79  KIEGLE-NLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRI--SKIDSLDALVKLQV 135

Query: 113 LNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLD 166
           L+L   ++ ++  +  L++ +CL++L L    +    DY+  +   LP L  LD
Sbjct: 136 LSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLD 189


>gi|194272222 leucine rich repeat containing 48 isoform a [Homo
           sapiens]
          Length = 523

 Score = 37.7 bits (86), Expect = 0.021
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 53  KIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTH 112
           KIE L     +L +L L    + +I  L  L  L+   L  NRI      S + L  L  
Sbjct: 79  KIEGLE-NLAHLVWLDLSFNNIETIEGLDTLVNLEDLSLFNNRI--SKIDSLDALVKLQV 135

Query: 113 LNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLD 166
           L+L   ++ ++  +  L++ +CL++L L    +    DY+  +   LP L  LD
Sbjct: 136 LSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLD 189


>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
          Length = 2325

 Score = 37.7 bits (86), Expect = 0.021
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 53  KIESLTAEFVNLEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTH 112
           KIE L  + + L  L L    +  I  +  +  L+K  L+ N I        +KL +L  
Sbjct: 139 KIEKLD-KLLKLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRV 197

Query: 113 LNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDY-QESVFKL 158
           LNL G K+  +  +  LK L+ L SL L    V+ L  Y Q ++F L
Sbjct: 198 LNLKGNKISSLQDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHL 244


>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
          Length = 542

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 20/173 (11%)

Query: 30  DGASGSAARVREHV--LDNCKSNDWKIESLT---AEFVNLEFLRLINVGLISISNLPKLP 84
           D   GS      H+  LD  K N   + SL        +L+ L L   GL  +  +  LP
Sbjct: 79  DTREGSLGNFGVHLPNLDQLKLNGSHLGSLRDLGTSLGHLQVLWLARCGLADLDGIASLP 138

Query: 85  KLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKLKDISTLEPLK------------KL 132
            LK+   S N I     +    L  L  L+L G  ++D+  +  L+             L
Sbjct: 139 ALKELYASYNNISDLSPLCL--LEQLEVLDLEGNSVEDLGQVRYLQLCPRLAMLTLEGNL 196

Query: 133 ECLKSLDLFNCEVINLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDAQLLAD 185
            CL+       +V    +Y+  V KL+PQL  LD   P     P +  +L  D
Sbjct: 197 VCLQPAPGPTNKVPRGYNYRAEVRKLIPQLQVLDEV-PAAHTGPPAPPRLSQD 248


>gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens]
          Length = 356

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 83  LPKLKKFVLSENRIFGGLNMSA--EKLPNLTHLNLSGKKLKDISTLEPLKKLE 133
           +P+L    LS NR++   +MS+  +K PNL  LNLSG +LK    L+ +K L+
Sbjct: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 316


>gi|40217823 SLIT and NTRK-like family, member 5 [Homo sapiens]
          Length = 958

 Score = 37.0 bits (84), Expect = 0.037
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 13/118 (11%)

Query: 50  NDWKIESLTAE-FVNLEFLRLINVGLISISNLP-----KLPKLKKFVLSENRIFGGLNMS 103
           N+ K+E L  + F+ LE L  + V    IS +      KL  L+  +L++N +   L  +
Sbjct: 137 NNNKLELLRDDTFLGLENLEYLQVDYNYISVIEPNAFGKLHLLQVLILNDN-LLSSLPNN 195

Query: 104 AEKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDL------FNCEVINLNDYQESV 155
             +   LTHL+L G +LK +  +  L+ ++ +  L L       +CE+I+L D+ +S+
Sbjct: 196 LFRFVPLTHLDLRGNRLKLLPYVGLLQHMDKVVELQLEENPWNCSCELISLKDWLDSI 253


>gi|66472382 nischarin [Homo sapiens]
          Length = 1504

 Score = 36.6 bits (83), Expect = 0.048
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 23/114 (20%)

Query: 64  LEFLRLINVGLISISNLPKLPKLKKFVLSENRIFGGLNMSAEKLPNLTHLNLSGKKLKDI 123
           +EFL L + GL+ + NL  L  L    LS N++   L     KL N+  LNL+G  L+ +
Sbjct: 312 IEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKL-SSLEGLHTKLGNIKTLNLAGNLLESL 370

Query: 124 STLEPLKKL----------------------ECLKSLDLFNCEVINLNDYQESV 155
           S L  L  L                       CL+ + L N  +  + DY+  V
Sbjct: 371 SGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKV 424


>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
          Length = 2468

 Score = 36.2 bits (82), Expect = 0.062
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 16/133 (12%)

Query: 270  PEPVQIQYKSMTKI-LPILNKSWSQGPTTRYPCESLRGAATEHLLPNGRGGKAVTIDIKS 328
            P    + YK M     P+ ++S    P+ R+P  S+     E L      GKA+  D+K 
Sbjct: 2188 PTDKTVTYKHMDPPPAPVQDRS----PSPRHPDVSM--VDPEALAIEQNLGKALKKDLKE 2241

Query: 329  TTVAPAPNTMQK-SDPGEGEEGKEKSNLICPRSRRPKPEQLYEAEELGNIQMTPGES--- 384
             T    P T  K S P +  +GK K     P +  PKP  L E+ +  +   +P +    
Sbjct: 2242 KTKTKKPGTKTKSSSPVKKSDGKSK-----PLAASPKPAGLKESSDKVSRVASPKKKESV 2296

Query: 385  DEAGNPSQTPYLR 397
            ++A  P+ TP ++
Sbjct: 2297 EKAAKPTTTPEVK 2309


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,275,224
Number of Sequences: 37866
Number of extensions: 1163246
Number of successful extensions: 3485
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 3337
Number of HSP's gapped (non-prelim): 240
length of query: 450
length of database: 18,247,518
effective HSP length: 106
effective length of query: 344
effective length of database: 14,233,722
effective search space: 4896400368
effective search space used: 4896400368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.