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Search of human proteins with 239744921
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo
sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756085 PREDICTED: hypothetical protein [Homo sapiens] 345 1e-95
gi|239750614 PREDICTED: hypothetical protein [Homo sapiens] 345 1e-95
gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo ... 345 1e-95
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 44 8e-05
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 40 7e-04
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 40 7e-04
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 40 7e-04
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 40 7e-04
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 40 7e-04
gi|18641360 collectin sub-family member 12 [Homo sapiens] 39 0.003
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 39 0.003
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens] 38 0.005
gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens] 38 0.005
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 38 0.005
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 37 0.006
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.008
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 37 0.008
gi|33239445 eukaryotic translation initiation factor 3, subunit ... 37 0.008
gi|83367072 eukaryotic translation initiation factor 3, subunit ... 37 0.008
gi|48762934 alpha 2 type I collagen [Homo sapiens] 37 0.010
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 37 0.010
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 37 0.010
gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo sa... 37 0.010
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.013
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 36 0.017
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 36 0.017
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 36 0.017
gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo ... 36 0.017
gi|19924099 synapsin I isoform Ia [Homo sapiens] 36 0.017
>gi|239756085 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 345 bits (884), Expect = 1e-95
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MCELQNCRDKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREV 60
MCELQNCRDKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREV
Sbjct: 1 MCELQNCRDKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREV 60
Query: 61 RARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSL 120
RARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSL
Sbjct: 61 RARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSL 120
Query: 121 APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPRPS 165
APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPRPS
Sbjct: 121 APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPRPS 165
>gi|239750614 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 345 bits (884), Expect = 1e-95
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MCELQNCRDKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREV 60
MCELQNCRDKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREV
Sbjct: 1 MCELQNCRDKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREV 60
Query: 61 RARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSL 120
RARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSL
Sbjct: 61 RARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSL 120
Query: 121 APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPRPS 165
APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPRPS
Sbjct: 121 APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPRPS 165
>gi|239744921 PREDICTED: hypothetical protein XP_002343308 [Homo
sapiens]
Length = 165
Score = 345 bits (884), Expect = 1e-95
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MCELQNCRDKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREV 60
MCELQNCRDKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREV
Sbjct: 1 MCELQNCRDKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREV 60
Query: 61 RARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSL 120
RARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSL
Sbjct: 61 RARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSL 120
Query: 121 APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPRPS 165
APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPRPS
Sbjct: 121 APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPRPS 165
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 43.5 bits (101), Expect = 8e-05
Identities = 51/180 (28%), Positives = 62/180 (34%), Gaps = 34/180 (18%)
Query: 11 TPRRKERNHSERSQGQGQG------------------RKPRPG---QRSVSQIETKIPGE 49
+PR HS S+G+G P+PG QR+ K PG
Sbjct: 157 SPRWFSSRHSSISEGEGDRCGFAEPPGGSSPPAPPLPPPPKPGSPTQRAREASSWKPPGH 216
Query: 50 RHTHRLRRREVRARVPRGSKEGHKD-REEAWGPWAAAARLDPVGLTQRACARCPPPAVGR 108
HT R R R S E + AW + L P QR PP
Sbjct: 217 SHTAPPGRGTQRPLTQRHSSESSSELSSSAWPGTIWTSTLSP---GQRLPTPPPPDPAAL 273
Query: 109 ASPGAQGAGGSLAPYSSA---RVRKSGP------QSSSGSAGPGAPPASLPEPRELREPQ 159
S G G+ P A R R GP ++SGS GPG P S P P L P+
Sbjct: 274 TSWGLPQQQGACVPEGIALALRCRAMGPWEEQNWSATSGSPGPGPHPRSRPTPPRLPYPR 333
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 40.4 bits (93), Expect = 7e-04
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 79 WGPWAAAARLDPVGLTQRACA-RCPPPAVGR----ASPGAQGAGGSLAPYSSARVRKSGP 133
W AA A L V A R P P G ASP GG A + S R R+ P
Sbjct: 41 WPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPP 100
Query: 134 QSSSGSAGPGAPPASLP 150
Q S + P APP++LP
Sbjct: 101 QPSRPAPPPPAPPSALP 117
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 40.4 bits (93), Expect = 7e-04
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 79 WGPWAAAARLDPVGLTQRACA-RCPPPAVGR----ASPGAQGAGGSLAPYSSARVRKSGP 133
W AA A L V A R P P G ASP GG A + S R R+ P
Sbjct: 24 WPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPP 83
Query: 134 QSSSGSAGPGAPPASLP 150
Q S + P APP++LP
Sbjct: 84 QPSRPAPPPPAPPSALP 100
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 40.4 bits (93), Expect = 7e-04
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 79 WGPWAAAARLDPVGLTQRACA-RCPPPAVGR----ASPGAQGAGGSLAPYSSARVRKSGP 133
W AA A L V A R P P G ASP GG A + S R R+ P
Sbjct: 32 WPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPP 91
Query: 134 QSSSGSAGPGAPPASLP 150
Q S + P APP++LP
Sbjct: 92 QPSRPAPPPPAPPSALP 108
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 40.4 bits (93), Expect = 7e-04
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 79 WGPWAAAARLDPVGLTQRACA-RCPPPAVGR----ASPGAQGAGGSLAPYSSARVRKSGP 133
W AA A L V A R P P G ASP GG A + S R R+ P
Sbjct: 24 WPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPP 83
Query: 134 QSSSGSAGPGAPPASLP 150
Q S + P APP++LP
Sbjct: 84 QPSRPAPPPPAPPSALP 100
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 40.4 bits (93), Expect = 7e-04
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 79 WGPWAAAARLDPVGLTQRACA-RCPPPAVGR----ASPGAQGAGGSLAPYSSARVRKSGP 133
W AA A L V A R P P G ASP GG A + S R R+ P
Sbjct: 32 WPTLAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPP 91
Query: 134 QSSSGSAGPGAPPASLP 150
Q S + P APP++LP
Sbjct: 92 QPSRPAPPPPAPPSALP 108
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/91 (35%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 65 PRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYS 124
P G+K G K + GP A P+G A P G+ S G+QG GS
Sbjct: 462 PTGNK-GQKGEKGEPGPPGPAGERGPIGP-----AGPPGERGGKGSKGSQGPKGSRGSPG 515
Query: 125 SARVRKSGPQSSSGSAGPGAPPA--SLPEPR 153
K GPQ SG GP PP LP P+
Sbjct: 516 -----KPGPQGPSGDPGPPGPPGKEGLPGPQ 541
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 38.5 bits (88), Expect = 0.003
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 19/99 (19%)
Query: 62 ARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGR-ASPGAQGAGGSL 120
+++P+G ++ H ++ P+ + Q PP G+ PG QG G
Sbjct: 595 SQIPQGFQQPHPSQQM------------PMNMAQMG----PPGPQGQFRPPGPQGQMGPQ 638
Query: 121 APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQ 159
P GPQ G GP PP LP P+++ PQ
Sbjct: 639 GP--PLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQ 675
Score = 29.3 bits (64), Expect = 1.6
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 23/106 (21%)
Query: 65 PRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLA--- 121
P+G +G ++ GP P G P + PG QG+ G
Sbjct: 658 PQGPPQGLPRPQDMHGPQGMQRHPGPHG-----------PLGPQGPPGPQGSSGPQGHMG 706
Query: 122 ----PYSSARVRKSGPQSSSGSAGPGAPPASL-----PEPRELREP 158
P + GP G GP PP + P PR ++ P
Sbjct: 707 PQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGP 752
>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
Length = 755
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 20/135 (14%)
Query: 34 PGQRSVSQIETK---IPG-ERHTHRLRRREVRARVPRGSKEGHKDREEAWGPWAAAARLD 89
PG+ + E + IPG E T L A VP G +G + +A P L
Sbjct: 15 PGEGGAGEAEPEMEPIPGSEAGTDPLPVTATEASVPDGETDGQQSAPQADEP-----PLP 69
Query: 90 PVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASL 149
P PPP G + + G L VR + +++ GP PP+
Sbjct: 70 P-----------PPPPPGELARSPEAVGPELEAEEKLSVRVAESAAAAPQGGPELPPSPA 118
Query: 150 PEPRELREPQEEPRP 164
P + P+E P
Sbjct: 119 SPPEQPPAPEEREEP 133
>gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens]
Length = 560
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 20/135 (14%)
Query: 34 PGQRSVSQIETK---IPG-ERHTHRLRRREVRARVPRGSKEGHKDREEAWGPWAAAARLD 89
PG+ + E + IPG E T L A VP G +G + +A P L
Sbjct: 15 PGEGGAGEAEPEMEPIPGSEAGTDPLPVTATEASVPDGETDGQQSAPQADEP-----PLP 69
Query: 90 PVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASL 149
P PPP G + + G L VR + +++ GP PP+
Sbjct: 70 P-----------PPPPPGELARSPEAVGPELEAEEKLSVRVAESAAAAPQGGPELPPSPA 118
Query: 150 PEPRELREPQEEPRP 164
P + P+E P
Sbjct: 119 SPPEQPPAPEEREEP 133
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 37.7 bits (86), Expect = 0.005
Identities = 42/146 (28%), Positives = 52/146 (35%), Gaps = 10/146 (6%)
Query: 20 SERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREVRARVPRGSKEGHKDREEAW 79
S RS GQ GR S+ +++ P R TH L +R + VP G E
Sbjct: 477 SIRSSGQLSGRSV-----SLRKLKRPPPPPRRTHSLHQRGLA--VPDGPLGLPPKPERKQ 529
Query: 80 GPWAAAARLDPVGLTQRA-CARCPPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSG 138
P R G ++ A A CPP PG G P S R SS
Sbjct: 530 QP--QLPRPPTTGGSEGAGAAPCPPNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQ 587
Query: 139 SAGPGAPPASLPEPRELREPQEEPRP 164
S P PP L P + P+P
Sbjct: 588 SGTPTLPPKGLAGPPASPGKAQPPKP 613
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.4 bits (85), Expect = 0.006
Identities = 42/171 (24%), Positives = 59/171 (34%), Gaps = 28/171 (16%)
Query: 12 PRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREVRARVPRGSKEG 71
P R + + S RS QGR R + G R R RRR R+ + G
Sbjct: 357 PARGKESPSPRSAPSSQGRGGRAAGGA---------GRRRRRRRRRRRSRSSASAPRRRG 407
Query: 72 HKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGG------------- 118
+ R P ++ L + + + P G +G GG
Sbjct: 408 RR-RPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRAR 466
Query: 119 --SLAPYSSARVRKSGPQSSSGSAGPGAPP---ASLPEPRELREPQEEPRP 164
S +P A R+ GP+ S S PG P +S P + R E RP
Sbjct: 467 PASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRP 517
Score = 33.5 bits (75), Expect = 0.086
Identities = 47/176 (26%), Positives = 64/176 (36%), Gaps = 29/176 (16%)
Query: 10 KTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGE-RHTHRLRRREVRARVPRGS 68
++P R+ HS S RS S++ K E R T R R+ P G
Sbjct: 246 ESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGG 305
Query: 69 KE--------GHKDREEAWGPWAAAARLDP-------VGLTQRACARCP-PPAVG----- 107
G R A G +A P + +A A P PPA G
Sbjct: 306 SGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPS 365
Query: 108 -RASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEP 162
R++P +QG GG A + R R+ + S S+ AS P R R P+ P
Sbjct: 366 PRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSS------ASAPRRRGRRRPRPAP 415
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 37.0 bits (84), Expect = 0.008
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 80 GPWAAAARLDPVGLTQRACARCPP-PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSG 138
GP AA P+G+ R + PP PA + +PG +G G + R GP G
Sbjct: 1093 GPAGAAG---PIGIPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AGRDGLQGPVGLPG 1144
Query: 139 SAGPGAPPASLPEPRELREPQEE 161
AGP PP + E+ EP ++
Sbjct: 1145 PAGPVGPPGEDGDKGEIGEPGQK 1167
Score = 31.6 bits (70), Expect = 0.33
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 107 GRASPGAQGAGGSLAPYSSARVR-------KSGPQSSSGSAGPGAPP 146
GR +PG G G P R K GP+ +SG GP PP
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPP 945
Score = 31.2 bits (69), Expect = 0.43
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 69 KEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASP-GAQGAGGSLAPYSSAR 127
++G K GP ++ G+T + PP G P G +GA GS
Sbjct: 1496 EQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGS-------- 1547
Query: 128 VRKSGPQSSSGSAGPGAPPASLPEPRELREP 158
SGP G AG PP P E+ +P
Sbjct: 1548 ---SGPTGPKGEAGHPGPPGPPGPPGEVIQP 1575
Score = 29.3 bits (64), Expect = 1.6
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 103 PPAVGR-------ASPGAQGAGGSLAPYSSARVR-KSGPQSSSGSAGPGAPP 146
P AVG PG G GG P + +SGP ++G GP PP
Sbjct: 1278 PGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPP 1329
Score = 28.5 bits (62), Expect = 2.8
Identities = 23/74 (31%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 80 GPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYSSARVRKS-GPQSSSG 138
GP R G A PP G P QGA G P + G Q G
Sbjct: 1396 GPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGP--QGAPGKPGPDGLRGIPGPVGEQGLPG 1453
Query: 139 SAGPGAPPASLPEP 152
S GP PP + P
Sbjct: 1454 SPGPDGPPGPMGPP 1467
Score = 27.3 bits (59), Expect = 6.2
Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 13/67 (19%)
Query: 80 GPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGS 139
GP P G+T + P P G G G P +GPQ +G
Sbjct: 913 GPTGPRGERGPRGITGK-----PGPKGNSGGDGPAGPPGERGP--------NGPQGPTGF 959
Query: 140 AGPGAPP 146
GP PP
Sbjct: 960 PGPKGPP 966
Score = 26.9 bits (58), Expect = 8.0
Identities = 31/105 (29%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 65 PRGSKE--GHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAP 122
PRG + G K E GP PVGL P P + G G G P
Sbjct: 1202 PRGQQGLFGQKGDE---GPRGFPGPPGPVGLQG-----LPGPPGEKGETGDVGQMGPPGP 1253
Query: 123 YSSARVRKSGPQSSSGSAGPGAPPASLPEP---RELREPQEEPRP 164
GP + G+ GP PP + P E EP E P
Sbjct: 1254 PGPR-----GPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEP 1293
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 37.0 bits (84), Expect = 0.008
Identities = 43/165 (26%), Positives = 56/165 (33%), Gaps = 24/165 (14%)
Query: 13 RRKERNHSERSQGQ------GQGRKPRPGQRSVSQIETKIPGERH----THRLRRREVRA 62
R + R HS+ S + G G + P R + PG RH R RA
Sbjct: 12 RARGRPHSQVSLARRAPLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCRA 71
Query: 63 RVPRGSKEGHKDREEAWGPWAAAA---RLDPVGLT-----QRACARCPPPAVGRASPGAQ 114
R P + G + GPW AA R D QR AR P + +PG
Sbjct: 72 RCPSPAAGGLR------GPWTAAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAPGRD 125
Query: 115 GAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQ 159
P + P +G APP+ P PR P+
Sbjct: 126 ALRLPPPPPPPPERPRLPPAGLAGGPADSAPPSPAPAPRSRPAPR 170
Score = 32.0 bits (71), Expect = 0.25
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 99 ARCPPPAVG------RASPGAQGA--GGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLP 150
ARCP PA G A+PG Q A G + A RV S+ + PG LP
Sbjct: 71 ARCPSPAAGGLRGPWTAAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAPGRDALRLP 130
Query: 151 EPRELREPQEEPR 163
P P E PR
Sbjct: 131 PPPP--PPPERPR 141
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 37.0 bits (84), Expect = 0.008
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 65 PRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYS 124
P+G K G GP R P+G A PP G G +GA G P+
Sbjct: 604 PKGQK-GSVGDPGMEGPMGQRGREGPMGPRGEA----GPP--GSGEKGERGAAGEPGPHG 656
Query: 125 SARVRKS-GPQSSSGSAGPGAPP 146
V S GP+ SSGS GP PP
Sbjct: 657 PPGVPGSVGPKGSSGSPGPQGPP 679
Score = 27.7 bits (60), Expect = 4.7
Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 65 PRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGS----L 120
PRG ++G GP + GLT + P GR PG +G G+ +
Sbjct: 753 PRG-EQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGR--PGIKGEPGAPGKIV 809
Query: 121 APYSSARVRKSGPQSSSGSAGPGAP--------PASLPEPRELREPQEEPRP 164
S+ + GP G+ GP P PA LP +E+ Q P P
Sbjct: 810 TSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGP 861
>gi|33239445 eukaryotic translation initiation factor 3, subunit 9
eta, 116kDa [Homo sapiens]
Length = 814
Score = 37.0 bits (84), Expect = 0.008
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 73 KDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGR---ASPGAQGAGGSLAPYSSARVR 129
+D E P AA R +P Q+ A PPPA G A PGA A G+ A +
Sbjct: 2 QDAENVAVPEAAEERAEP---GQQQPAAEPPPAEGLLRPAGPGAPEAAGTEASSEEVGIA 58
Query: 130 KSGPQS---------SSGSAGPGAPPASLPEPRELREPQEEP 162
++GP+S + ++GP P S P EL EP
Sbjct: 59 EAGPESEVRTEPAAEAEAASGPSESP-SPPAAEELPGSHAEP 99
>gi|83367072 eukaryotic translation initiation factor 3, subunit 9
eta, 116kDa [Homo sapiens]
Length = 814
Score = 37.0 bits (84), Expect = 0.008
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 73 KDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGR---ASPGAQGAGGSLAPYSSARVR 129
+D E P AA R +P Q+ A PPPA G A PGA A G+ A +
Sbjct: 2 QDAENVAVPEAAEERAEP---GQQQPAAEPPPAEGLLRPAGPGAPEAAGTEASSEEVGIA 58
Query: 130 KSGPQS---------SSGSAGPGAPPASLPEPRELREPQEEP 162
++GP+S + ++GP P S P EL EP
Sbjct: 59 EAGPESEVRTEPAAEAEAASGPSESP-SPPAAEELPGSHAEP 99
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 36.6 bits (83), Expect = 0.010
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 80 GPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYS----SARVRKSGPQS 135
GP AA GL P PA + G +G GS P S K GP
Sbjct: 331 GPVGAAGATGARGLVGE-----PGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNG 385
Query: 136 SSGSAGPGAPPASLPEP 152
+GSAGP PP P
Sbjct: 386 EAGSAGPPGPPGLRGSP 402
Score = 35.0 bits (79), Expect = 0.030
Identities = 39/125 (31%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 27 GQGRKPRPGQRSVSQIETKIPGERHTHRLRRREVRARVPRGSKEGHKDREEAWGPWAAAA 86
G+G K PG R E PG R R V A P G+ G + A GP A
Sbjct: 653 GKGEKGEPGLRG----EIGNPG-RDGARGAPGAVGAPGPAGAT-GDRGEAGAAGPAGPAG 706
Query: 87 RLDPVGLTQRACARCPP----PAVGRASPGAQGAGGSLAPYS-SARVRKSGPQSSSGSAG 141
G P PA PGA+G G+ P + V +GP ++G AG
Sbjct: 707 PRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAG 766
Query: 142 PGAPP 146
P PP
Sbjct: 767 PNGPP 771
Score = 32.3 bits (72), Expect = 0.19
Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 62 ARVPRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPP-PAVGRASPGAQGAGGSL 120
A+ RG+K G K GP PVG A PP PA R G G G
Sbjct: 737 AKGERGAK-GPKGENGVVGPTG------PVGAAGPAGPNGPPGPAGSRGDGGPPGMTGF- 788
Query: 121 APYSSARVRKSGPQSSSGSAGPGAPPASLPEPRE-LREPQEEPRP 164
P ++ R +GP SG +GP PP P +E LR P+ + P
Sbjct: 789 -PGAAGR---TGPPGPSGISGPPGPPG--PAGKEGLRGPRGDQGP 827
Score = 28.9 bits (63), Expect = 2.1
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 102 PPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEP 152
P PA R G G G+ P +GP S G +GP P + EP
Sbjct: 582 PGPAGPRGERGPPGESGAAGP--------TGPIGSRGPSGPPGPDGNKGEP 624
Score = 27.3 bits (59), Expect = 6.2
Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 55 LRRREVRARVPRGSK--EGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPG 112
+R+ R PRG + G R+ GP P G PP G +
Sbjct: 30 VRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPG---------PPGLGGNFAAQ 80
Query: 113 AQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRE 154
G G L P + GP ++G+ GP EP E
Sbjct: 81 YDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGE 122
Score = 27.3 bits (59), Expect = 6.2
Identities = 31/108 (28%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 63 RVPRGSKE--GHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGR-ASPGAQGAGGS 119
R PRG + G A GP A P G A P G +PG G GS
Sbjct: 819 RGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGS 878
Query: 120 LA----PYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPR 163
P + V + GP +G G PP ++ P P E R
Sbjct: 879 RGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGR 926
Score = 27.3 bits (59), Expect = 6.2
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 103 PPAVGRASP----------GAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPP 146
P +VG A P G G G A +R GPQ G AGP PP
Sbjct: 1044 PGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIR--GPQGHQGPAGPPGPP 1095
Score = 26.9 bits (58), Expect = 8.0
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 17/113 (15%)
Query: 60 VRARVPRG--SKEGHKDREEAWGPWAAAARLDPVGLT-QRACARCPPPAVGRASPG---- 112
+ +R P G +G+K G A P GL +R A P + PG
Sbjct: 606 IGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGE 665
Query: 113 --------AQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELRE 157
A+GA G++ A +G + +G+AGP P P E E
Sbjct: 666 IGNPGRDGARGAPGAVGAPGPAGA--TGDRGEAGAAGPAGPAGPRGSPGERGE 716
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 36.6 bits (83), Expect = 0.010
Identities = 48/159 (30%), Positives = 61/159 (38%), Gaps = 29/159 (18%)
Query: 9 DKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREVRARVPRGS 68
D RR+ + R++ GQ R R R+ SQ+ ++ G RVP G
Sbjct: 422 DDPARRRNPGAAARAKLAGQ-RAGRARARTGSQVGSRGRGWGPG--------AGRVPSGG 472
Query: 69 KEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYSSARV 128
+ G E WG AAA R V L + P R P A L RV
Sbjct: 473 RRG-VGNPERWGGEAAAPRPSRVLLPELPAV--DPARDTRREPDAAAQRTELG----GRV 525
Query: 129 RKSGPQSSSGSAGPGAPPASLPEPR---ELREPQEEPRP 164
K GPGAPP++LP PR + P E P P
Sbjct: 526 GK----------GPGAPPSALPGPRPRPDSLSPGEPPGP 554
Score = 27.7 bits (60), Expect = 4.7
Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 10 KTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHR-----LRRREVRARV 64
+ P R + G+ PRP + + ++ P R T R +R E+ RV
Sbjct: 467 RVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPA-RDTRREPDAAAQRTELGGRV 525
Query: 65 PRG------SKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGG 118
+G + G + R ++ P +P G AR P AV A + GG
Sbjct: 526 GKGPGAPPSALPGPRPRPDSLSPG------EPPGPPTPPPARALPAAVASARCSLRDPGG 579
Query: 119 SLAPYSSARVRKSGP 133
A S R GP
Sbjct: 580 GSARIRSRPGRSGGP 594
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 36.6 bits (83), Expect = 0.010
Identities = 48/159 (30%), Positives = 61/159 (38%), Gaps = 29/159 (18%)
Query: 9 DKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREVRARVPRGS 68
D RR+ + R++ GQ R R R+ SQ+ ++ G RVP G
Sbjct: 422 DDPARRRNPGAAARAKLAGQ-RAGRARARTGSQVGSRGRGWGPG--------AGRVPSGG 472
Query: 69 KEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYSSARV 128
+ G E WG AAA R V L + P R P A L RV
Sbjct: 473 RRG-VGNPERWGGEAAAPRPSRVLLPELPAV--DPARDTRREPDAAAQRTELG----GRV 525
Query: 129 RKSGPQSSSGSAGPGAPPASLPEPR---ELREPQEEPRP 164
K GPGAPP++LP PR + P E P P
Sbjct: 526 GK----------GPGAPPSALPGPRPRPDSLSPGEPPGP 554
Score = 27.7 bits (60), Expect = 4.7
Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 10 KTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHR-----LRRREVRARV 64
+ P R + G+ PRP + + ++ P R T R +R E+ RV
Sbjct: 467 RVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPA-RDTRREPDAAAQRTELGGRV 525
Query: 65 PRG------SKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGG 118
+G + G + R ++ P +P G AR P AV A + GG
Sbjct: 526 GKGPGAPPSALPGPRPRPDSLSPG------EPPGPPTPPPARALPAAVASARCSLRDPGG 579
Query: 119 SLAPYSSARVRKSGP 133
A S R GP
Sbjct: 580 GSARIRSRPGRSGGP 594
>gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo
sapiens]
Length = 331
Score = 36.6 bits (83), Expect = 0.010
Identities = 35/158 (22%), Positives = 47/158 (29%), Gaps = 9/158 (5%)
Query: 5 QNCRDKTPRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREVRARV 64
Q CRD P PR + + E + P EVR ++
Sbjct: 142 QLCRDAVPGEAALQARVPEPWVPPSSAPREPSSPLPKFEAQAPPSAPPAPRAEAEVRPKI 201
Query: 65 PRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYS 124
P + D EE A R D V L R + P +G P
Sbjct: 202 PGSREAAENDEEEPGEATGEAVREDRVTLADRG---------PKERPRREGKPRKEKPRK 252
Query: 125 SARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEP 162
R +K P+ P +LP+ E RE P
Sbjct: 253 EERPKKERPRKEERPRAAREPREALPQRWESREGGHRP 290
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.2 bits (82), Expect = 0.013
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 102 PPPAVGRA-SPGAQGAGGSLAPYSSA----RVRKSGPQSSSGSAGPGAPP 146
PP +G +PGA+GA GS P + + GP SG+AGP PP
Sbjct: 849 PPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPP 898
Score = 34.7 bits (78), Expect = 0.039
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 80 GPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGS 139
GP + P G + A R PP + G +PG G G P + GP+ +G
Sbjct: 1121 GPPGSPGEQGPSGASGPAGPRGPPGSAG--APGKDGLNGLPGP-----IGPPGPRGRTGD 1173
Query: 140 AGPGAPP 146
AGP PP
Sbjct: 1174 AGPVGPP 1180
Score = 33.5 bits (75), Expect = 0.086
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 102 PPPAVGRASPGAQGAGGSLAPY--------SSARVRKSGPQSSSGSAGPGAPPASLPEPR 153
P P PG G GG+ AP S+ + GP SG G PP + P P+
Sbjct: 141 PGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGA-PGPQ 199
Query: 154 ELREPQEEP 162
+ P EP
Sbjct: 200 GFQGPPGEP 208
Score = 33.1 bits (74), Expect = 0.11
Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 65 PRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASPGAQGAGGSLAPYS 124
PRGS+ R E GP A P G P A G+ PGA+GA G AP
Sbjct: 360 PRGSEGPQGVRGEP-GPPGPAGAAGPAG---------NPGADGQ--PGAKGANG--APGI 405
Query: 125 SARVRKSGPQSSSGSAGPGAPP 146
+ G + SG GPG PP
Sbjct: 406 AGAPGFPGARGPSGPQGPGGPP 427
Score = 31.6 bits (70), Expect = 0.33
Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 65 PRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRASP-------GAQGAG 117
PRG G + R A GP A G A PP G A P GA+G
Sbjct: 303 PRGLP-GERGRPGAPGPAGARGNDGATG------AAGPPGPTGPAGPPGFPGAVGAKGEA 355
Query: 118 GSLAPYSSARVR----KSGPQSSSGSAGPGAPPASLPEP 152
G P S + + GP +G+AGP P + +P
Sbjct: 356 GPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394
Score = 31.6 bits (70), Expect = 0.33
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 102 PPPAVGRASP-GAQGAGGSLAPYSSARVR-KSGPQSS---SGSAGPGAPPASLPEPRELR 156
PP AVG A G GA G P A R + GP S G GP PP +P E
Sbjct: 603 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG 662
Query: 157 EPQE--EPRPS 165
P + P PS
Sbjct: 663 VPGDLGAPGPS 673
Score = 31.2 bits (69), Expect = 0.43
Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 71 GHKDREEAWGPWAAAARLDPVGLT-QRACARCPPPAVGRASPGAQGAGGSLAPYSSARVR 129
G K A GP A P G+ QR P R PG G G
Sbjct: 932 GEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSG----------- 980
Query: 130 KSGPQSSSGSAGPGAPPASLPEPRELREPQEEPR 163
+ G Q SG++G PP + P P E R
Sbjct: 981 EPGKQGPSGASGERGPPGPMGPPGLAGPPGESGR 1014
Score = 31.2 bits (69), Expect = 0.43
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 104 PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAP 145
PA +PGA GA G + P KSG + +G AGP P
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAG-----KSGDRGETGPAGPAGP 1077
Score = 31.2 bits (69), Expect = 0.43
Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 65 PRGSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVG-------RASPGAQGAG 117
P G DR E GP A + PVG A + P G R G +G
Sbjct: 1056 PVGPAGKSGDRGET-GPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFS 1114
Query: 118 GSLAPYSS-ARVRKSGPQSSSGSAGPGAPPASLPEP 152
G P + GP +SG AGP PP S P
Sbjct: 1115 GLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAP 1150
Score = 30.8 bits (68), Expect = 0.56
Identities = 27/87 (31%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 80 GPWAAAARLDPVGLTQRACARCPPPAVGRASP-GAQGAGGSLA-PYSSARVRKSGPQSSS 137
GP P G + AR P G P G +G GS P + GP
Sbjct: 452 GPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER 511
Query: 138 GSAGPGAPPASLPEPRELREPQEEPRP 164
GS GP P S P E P E P
Sbjct: 512 GSPGPAGPKGS---PGEAGRPGEAGLP 535
Score = 29.6 bits (65), Expect = 1.2
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 80 GPWAAAARLDPVGLTQRACARCPPPAVGR-ASPGAQGAGGSLAPYSSARVRKSGPQSSSG 138
GP A+ P G PP GR +PGA+G+ G R G + G
Sbjct: 986 GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPG--------RDGSPGAKGDRG 1037
Query: 139 SAGPGAPPASLPEP 152
GP PP + P
Sbjct: 1038 ETGPAGPPGAPGAP 1051
Score = 28.9 bits (63), Expect = 2.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 102 PPPAVGRASPGAQGAGGSLAPYSSARVR-KSGPQSSSGSAGPGAPPASLPEP 152
P PA PGA G G+ A + +GP +G AGP P ++ P
Sbjct: 808 PGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAP 859
Score = 27.7 bits (60), Expect = 4.7
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 111 PGAQGAGGSL-APYSSARVRKSGPQSSSGSAGPGAPPAS 148
PGA+G GS +P + GP G GP PP +
Sbjct: 535 PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGA 573
Score = 27.7 bits (60), Expect = 4.7
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 14/76 (18%)
Query: 95 QRACARCPPPAVGRASPGAQGAGGS------------LAPYSSARVRKSGPQSSSGSAGP 142
+R A P P R G +GA GS + P A G + SG +GP
Sbjct: 732 ERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGA--PGDKGESGPSGP 789
Query: 143 GAPPASLPEPRELREP 158
P + P + EP
Sbjct: 790 AGPTGARGAPGDRGEP 805
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 35.8 bits (81), Expect = 0.017
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 80 GPWAAAARLDPVGLTQRACARCPP-PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSG 138
G +A P+GL R + PP PA + +PG +G G + R GP G
Sbjct: 1072 GERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AGRDGVQGPVGLPG 1126
Query: 139 SAGPGAPPASLPEPRELREPQEE 161
AGP P + E+ EP ++
Sbjct: 1127 PAGPAGSPGEDGDKGEIGEPGQK 1149
Score = 31.2 bits (69), Expect = 0.43
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 96 RACARCPPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPP 146
R A P P R G +G+ G+ P K GP+ +SG GP PP
Sbjct: 882 RGVAGKPGPRGQRGPTGPRGSRGARGPTG-----KPGPKGTSGGDGPPGPP 927
Score = 29.6 bits (65), Expect = 1.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 102 PPPAVGRAS----PGAQGAGGSLAPYSS-ARVRKSGPQSSSGSAGPGAPPASL 149
PP +G PG +G G + P GPQ +G+ GP PP S+
Sbjct: 1205 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV 1257
Score = 29.6 bits (65), Expect = 1.2
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 102 PPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREP 158
P PA PG G G P + +GP G +G PP S P E+ +P
Sbjct: 1503 PGPAGPLGPPGPPGLPGPQGPKGNKG--STGPAGQKGDSGLPGPPGSPGPPGEVIQP 1557
Score = 28.1 bits (61), Expect = 3.6
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 80 GPWAAAARLDPVGLTQRA--CARCPPPAVGRAS-PGAQGAGGSLAPYSSARVRKSGPQSS 136
GP +A + Q+A R PP +G PG G GS SG +
Sbjct: 518 GPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS-----------SGAKGE 566
Query: 137 SGSAGPGAPPASLPEPRELREPQEEPRP 164
SG GP P P +P + RP
Sbjct: 567 SGDPGPQGPRGVQGPPGPTGKPGKRGRP 594
Score = 27.3 bits (59), Expect = 6.2
Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 9/127 (7%)
Query: 27 GQGRKPRPGQRSVSQIE--TKIPGERHTHRLRRREVRARVPRGSKEGHKDREEAWGPWAA 84
G+G PG + + +PG++ HR R P G +G + + GP
Sbjct: 599 GRGMPGEPGAKGDRGFDGLPGLPGDKG-HRGERGPQGPPGPPGD-DGMRGEDGEIGPRGL 656
Query: 85 AARLDPVGLTQRACARCPPPAVGRAS-PGAQGAGGSLAPYSS----ARVRKSGPQSSSGS 139
P GL P G A G G G++ P + GPQ G
Sbjct: 657 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 716
Query: 140 AGPGAPP 146
GP PP
Sbjct: 717 QGPIGPP 723
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 102 PPPAVGRAS----PGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELRE 157
PP +VG G G G+ P A V GP+ G G PP + P
Sbjct: 1253 PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV--GGPKGERGEKGEAGPPGAAGPPGAKGP 1310
Query: 158 PQEE 161
P ++
Sbjct: 1311 PGDD 1314
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 102 PPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEP 152
PP G A G G GG + GP SG AGP PP P
Sbjct: 1331 PPGEPGPA--GQDGVGGDKG--EDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1377
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 35.8 bits (81), Expect = 0.017
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 80 GPWAAAARLDPVGLTQRACARCPP-PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSG 138
G +A P+GL R + PP PA + +PG +G G + R GP G
Sbjct: 1021 GERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AGRDGVQGPVGLPG 1075
Query: 139 SAGPGAPPASLPEPRELREPQEE 161
AGP P + E+ EP ++
Sbjct: 1076 PAGPAGSPGEDGDKGEIGEPGQK 1098
Score = 31.2 bits (69), Expect = 0.43
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 96 RACARCPPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPP 146
R A P P R G +G+ G+ P K GP+ +SG GP PP
Sbjct: 831 RGVAGKPGPRGQRGPTGPRGSRGARGPTG-----KPGPKGTSGGDGPPGPP 876
Score = 29.6 bits (65), Expect = 1.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 102 PPPAVGRAS----PGAQGAGGSLAPYSS-ARVRKSGPQSSSGSAGPGAPPASL 149
PP +G PG +G G + P GPQ +G+ GP PP S+
Sbjct: 1154 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV 1206
Score = 29.6 bits (65), Expect = 1.2
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 102 PPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREP 158
P PA PG G G P + +GP G +G PP S P E+ +P
Sbjct: 1452 PGPAGPLGPPGPPGLPGPQGPKGNKG--STGPAGQKGDSGLPGPPGSPGPPGEVIQP 1506
Score = 28.1 bits (61), Expect = 3.6
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 80 GPWAAAARLDPVGLTQRA--CARCPPPAVGRAS-PGAQGAGGSLAPYSSARVRKSGPQSS 136
GP +A + Q+A R PP +G PG G GS SG +
Sbjct: 467 GPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS-----------SGAKGE 515
Query: 137 SGSAGPGAPPASLPEPRELREPQEEPRP 164
SG GP P P +P + RP
Sbjct: 516 SGDPGPQGPRGVQGPPGPTGKPGKRGRP 543
Score = 27.3 bits (59), Expect = 6.2
Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 9/127 (7%)
Query: 27 GQGRKPRPGQRSVSQIE--TKIPGERHTHRLRRREVRARVPRGSKEGHKDREEAWGPWAA 84
G+G PG + + +PG++ HR R P G +G + + GP
Sbjct: 548 GRGMPGEPGAKGDRGFDGLPGLPGDKG-HRGERGPQGPPGPPGD-DGMRGEDGEIGPRGL 605
Query: 85 AARLDPVGLTQRACARCPPPAVGRAS-PGAQGAGGSLAPYSS----ARVRKSGPQSSSGS 139
P GL P G A G G G++ P + GPQ G
Sbjct: 606 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 665
Query: 140 AGPGAPP 146
GP PP
Sbjct: 666 QGPIGPP 672
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 102 PPPAVGRAS----PGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELRE 157
PP +VG G G G+ P A V GP+ G G PP + P
Sbjct: 1202 PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV--GGPKGERGEKGEAGPPGAAGPPGAKGP 1259
Query: 158 PQEE 161
P ++
Sbjct: 1260 PGDD 1263
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 102 PPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEP 152
PP G A G G GG + GP SG AGP PP P
Sbjct: 1280 PPGEPGPA--GQDGVGGDKG--EDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1326
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 35.8 bits (81), Expect = 0.017
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 80 GPWAAAARLDPVGLTQRACARCPP-PAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSG 138
G +A P+GL R + PP PA + +PG +G G + R GP G
Sbjct: 1060 GERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AGRDGVQGPVGLPG 1114
Query: 139 SAGPGAPPASLPEPRELREPQEE 161
AGP P + E+ EP ++
Sbjct: 1115 PAGPAGSPGEDGDKGEIGEPGQK 1137
Score = 31.2 bits (69), Expect = 0.43
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 96 RACARCPPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPP 146
R A P P R G +G+ G+ P K GP+ +SG GP PP
Sbjct: 870 RGVAGKPGPRGQRGPTGPRGSRGARGPTG-----KPGPKGTSGGDGPPGPP 915
Score = 29.6 bits (65), Expect = 1.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 102 PPPAVGRAS----PGAQGAGGSLAPYSS-ARVRKSGPQSSSGSAGPGAPPASL 149
PP +G PG +G G + P GPQ +G+ GP PP S+
Sbjct: 1193 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSV 1245
Score = 29.6 bits (65), Expect = 1.2
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 102 PPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREP 158
P PA PG G G P + +GP G +G PP S P E+ +P
Sbjct: 1491 PGPAGPLGPPGPPGLPGPQGPKGNKG--STGPAGQKGDSGLPGPPGSPGPPGEVIQP 1545
Score = 28.1 bits (61), Expect = 3.6
Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 80 GPWAAAARLDPVGLTQRA--CARCPPPAVGRAS-PGAQGAGGSLAPYSSARVRKSGPQSS 136
GP +A + Q+A R PP +G PG G GS SG +
Sbjct: 506 GPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGS-----------SGAKGE 554
Query: 137 SGSAGPGAPPASLPEPRELREPQEEPRP 164
SG GP P P +P + RP
Sbjct: 555 SGDPGPQGPRGVQGPPGPTGKPGKRGRP 582
Score = 27.3 bits (59), Expect = 6.2
Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 9/127 (7%)
Query: 27 GQGRKPRPGQRSVSQIE--TKIPGERHTHRLRRREVRARVPRGSKEGHKDREEAWGPWAA 84
G+G PG + + +PG++ HR R P G +G + + GP
Sbjct: 587 GRGMPGEPGAKGDRGFDGLPGLPGDKG-HRGERGPQGPPGPPGD-DGMRGEDGEIGPRGL 644
Query: 85 AARLDPVGLTQRACARCPPPAVGRAS-PGAQGAGGSLAPYSS----ARVRKSGPQSSSGS 139
P GL P G A G G G++ P + GPQ G
Sbjct: 645 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGP 704
Query: 140 AGPGAPP 146
GP PP
Sbjct: 705 QGPIGPP 711
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 102 PPPAVGRAS----PGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELRE 157
PP +VG G G G+ P A V GP+ G G PP + P
Sbjct: 1241 PPGSVGSVGGVGEKGEPGEAGNPGPPGEAGV--GGPKGERGEKGEAGPPGAAGPPGAKGP 1298
Query: 158 PQEE 161
P ++
Sbjct: 1299 PGDD 1302
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 102 PPPAVGRASPGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEP 152
PP G A G G GG + GP SG AGP PP P
Sbjct: 1319 PPGEPGPA--GQDGVGGDKG--EDGDPGQPGPPGPSGEAGPPGPPGKRGPP 1365
>gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo
sapiens]
Length = 176
Score = 35.8 bits (81), Expect = 0.017
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 53 HRLRRREVRARVPRGSKEG--HKDREEAWGPWAAAARLDPVGLTQRACARCPPPAVGRAS 110
HR RRR R P + G H R GP +AR P R R P P G A
Sbjct: 79 HRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSARFSPDPAAVRPQPRGPQPDSGSAR 138
Query: 111 PGAQGAGGSLAPYSSARVRKSGPQSSSGSAGPG 143
+ G+ A + A + P+ G PG
Sbjct: 139 QVPPDSRGAQALHRGAPLASPAPRGVRGVETPG 171
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 35.8 bits (81), Expect = 0.017
Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 26/176 (14%)
Query: 12 PRRKERNHSERSQGQGQGRKPRPGQRSVSQIETKIPGERHTHRLRRREVRARVPRGSKEG 71
P+R+ +R QGQ G + S + ++P + + P +G
Sbjct: 474 PQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQ---QPASQAAPPTQGQG 530
Query: 72 HKDREEAWGPWAAAARLDPVGLTQRACARCP------------PPAVGRASPGAQG---- 115
+ R A GP A A P + + A P PP A PG Q
Sbjct: 531 RQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGP 590
Query: 116 -------AGGSLAPYSSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEPRP 164
AG + + V ++GP ++ G PA P+P+ ++P ++ P
Sbjct: 591 PQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPP 646
Score = 30.8 bits (68), Expect = 0.56
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 25/159 (15%)
Query: 12 PRRKERNHSERSQGQGQ-GRKPRPGQ----RSVSQIETKIPGERHTHRLRRREVRARVPR 66
PR+++R + S G+G G+ P PG R SQ P ++ P+
Sbjct: 419 PRQRQR---DASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPP-----------PQ 464
Query: 67 GSKEGHKDREEAWGPWAAAARLDPVGLTQRACARCPPPA---VGRASPGAQGAGGSLAPY 123
G + GP R P G Q+ + PPA + + P A A
Sbjct: 465 GGPPQPGPGPQRQGP-PLQQRPPPQG--QQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQ 521
Query: 124 SSARVRKSGPQSSSGSAGPGAPPASLPEPRELREPQEEP 162
++ + G QS + GPGAPPA+ P + Q P
Sbjct: 522 AAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGP 560
Score = 28.5 bits (62), Expect = 2.8
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 102 PPPAVGRASPGA-QGAGGSLAPYSSARVRKSGPQS-SSGSAGPGAPPASL 149
PPP G SPGA G G + A SS + P + S GS+G G +SL
Sbjct: 31 PPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGFFSSL 80
Score = 28.1 bits (61), Expect = 3.6
Identities = 34/153 (22%), Positives = 54/153 (35%), Gaps = 16/153 (10%)
Query: 26 QGQGRKPRP-----GQRSVSQIETKIPGERHT---HRLRRREVRARVPRGSKEGHKDREE 77
QGQGR+ RP G ++ +R R+ V P + ++
Sbjct: 527 QGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQ 586
Query: 78 AWGPWAAAARLDPVGLTQRACARCP-----PPAVGRASPGAQGAGGSLAPYSSARVRKSG 132
GP P G T++A P PP + P G G P + + +
Sbjct: 587 RQGPPQKPP--GPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDV 644
Query: 133 PQSSSGSAGPGAPPASLPEPRELREPQEEPRPS 165
P ++ +AG G P L + + L P P+
Sbjct: 645 PPPATAAAG-GPPHPQLNKSQSLTNAFNLPEPA 676
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,348,559
Number of Sequences: 37866
Number of extensions: 546617
Number of successful extensions: 6162
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 655
Number of HSP's that attempted gapping in prelim test: 4649
Number of HSP's gapped (non-prelim): 2078
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.