Guide to the Human Genome
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Name: LOC100294358 Sequence: fasta or formatted (903aa) NCBI GI: 239750077
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         75           2
 C cysteine            2.0         18           1
 D aspartate           3.3         30           1
 E glutamate           5.8         52           3
 F phenylalanine       2.4         22           2
 G glycine             9.6         87           4
 H histidine           3.2         29           2
 I isoleucine          1.8         16           1
 K lysine              2.8         25           1
 L leucine            13.6        123           3
 M methionine          1.8         16           1
 N asparagine          1.2         11           1
 P proline             8.9         80           2
 Q glutamine           7.3         66           2
 R arginine            6.8         61           2
 S serine              7.9         71           3
 T threonine           4.3         39           2
 V valine              6.9         62           3
 W tryptophan          1.3         12           1
 Y tyrosine            0.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.007   PREDICTED: hypothetical protein LOC80164 
KIAA0774              0.007   hypothetical protein LOC23281 isoform a 
DSCAML1               0.006   Down syndrome cell adhesion molecule like 1 
LOC100293210          0.006   PREDICTED: hypothetical protein 
LOC100289267          0.006   PREDICTED: hypothetical protein XP_002342177 
LOC100293980          0.006   PREDICTED: hypothetical protein 
LOC100290741          0.006   PREDICTED: hypothetical protein XP_002346521 
LOC100288445          0.006   PREDICTED: hypothetical protein XP_002342359 
C11orf24              0.005   hypothetical protein LOC53838 
ARHGAP23              0.004   Rho GTPase activating protein 23 
LOC100288801          0.004   PREDICTED: hypothetical protein XP_002342402 
PYGO2                 0.004   pygopus homolog 2 
AFP                   0.004   alpha-fetoprotein precursor 
LOC729196             0.004   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
LOC729196             0.004   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
CELSR1                0.004   cadherin EGF LAG seven-pass G-type receptor 1 
EID2                  0.004   CREBBP/EP300 inhibitor 2 
MICALL2               0.004   MICAL-like 2 isoform 1 
CBX8                  0.004   chromobox homolog 8 
DOK7                  0.004   downstream of tyrosine kinase 7 
LOC100292175          0.004   PREDICTED: hypothetical protein 
LOC100133756          0.004   PREDICTED: hypothetical protein, partial 
GSPT1                 0.004   G1 to S phase transition 1 isoform 2 
GSPT1                 0.004   G1 to S phase transition 1 isoform 1 
NCOA3                 0.004   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.004   nuclear receptor coactivator 3 isoform b 
DIAPH1                0.004   diaphanous 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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