Guide to the Human Genome
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Name: LOC100289239 Sequence: fasta or formatted (125aa) NCBI GI: 239749872
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {125aa} PREDICTED: hypothetical protein XP_002343068
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         14           2
 C cysteine            1.6          2           1
 D aspartate           1.6          2           1
 E glutamate           3.2          4           1
 F phenylalanine       1.6          2           1
 G glycine            17.6         22           2
 H histidine           2.4          3           1
 I isoleucine          0.8          1           1
 K lysine              2.4          3           1
 L leucine             7.2          9           1
 M methionine          1.6          2           1
 N asparagine          0.0          0           0
 P proline            11.2         14           2
 Q glutamine           1.6          2           1
 R arginine           21.6         27           2
 S serine              5.6          7           1
 T threonine           3.2          4           2
 V valine              2.4          3           2
 W tryptophan          3.2          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289239          1.000   PREDICTED: hypothetical protein XP_002343068 
LMTK3                 0.058   lemur tyrosine kinase 3 
CTDP1                 0.053   CTD (carboxy-terminal domain, RNA polymerase II, pol...
AVEN                  0.053   cell death regulator aven 
PLCB2                 0.049   phospholipase C, beta 2 
LOC100291533          0.049   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.049   PREDICTED: hypothetical protein XP_002342946 
LOC100131354          0.049   PREDICTED: hypothetical protein 
LOC100133885          0.045   PREDICTED: hypothetical protein 
FLJ37078              0.045   hypothetical protein LOC222183 
COL5A2                0.045   alpha 2 type V collagen preproprotein 
LOC100287942          0.041   PREDICTED: hypothetical protein 
LOC100287942          0.041   PREDICTED: hypothetical protein XP_002343005 
GLT8D4                0.041   glycosyltransferase 8 domain containing 4 
LTBP1                 0.041   latent transforming growth factor beta binding prote...
C1orf77               0.037   small protein rich in arginine and glycine 
COL4A1                0.037   alpha 1 type IV collagen preproprotein 
SMAD6                 0.037   SMAD family member 6 isoform 1 
LOC100291807          0.033   PREDICTED: hypothetical protein XP_002345507 
LOC100134017          0.033   PREDICTED: hypothetical protein 
CTAG2                 0.033   cancer/testis antigen 2 isoform LAGE-1a 
CTAG2                 0.033   cancer/testis antigen 2 isoform LAGE-1b 
C17orf55              0.033   hypothetical protein LOC284185 
LOC100291900          0.033   PREDICTED: similar to hCG2006635, partial 
ELN                   0.029   elastin isoform e precursor 
ELN                   0.029   elastin isoform d precursor 
ELN                   0.029   elastin isoform c precursor 
ELN                   0.029   elastin isoform b precursor 
ELN                   0.029   elastin isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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