Guide to the Human Genome
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Name: LOC100293085 Sequence: fasta or formatted (108aa) NCBI GI: 239752777
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.7         17           2
 C cysteine            2.8          3           1
 D aspartate           4.6          5           1
 E glutamate           2.8          3           1
 F phenylalanine       0.0          0           0
 G glycine            15.7         17           2
 H histidine           4.6          5           1
 I isoleucine          2.8          3           2
 K lysine              0.9          1           1
 L leucine             3.7          4           1
 M methionine          0.9          1           1
 N asparagine          0.0          0           0
 P proline            11.1         12           1
 Q glutamine           6.5          7           2
 R arginine            8.3          9           2
 S serine              8.3          9           1
 T threonine           1.9          2           1
 V valine              7.4          8           1
 W tryptophan          1.9          2           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290159          1.000   PREDICTED: hypothetical protein XP_002346412 
LOC100286999          1.000   PREDICTED: hypothetical protein XP_002342112 
NKX2-1                0.074   thyroid transcription factor 1 isoform 1 
NKX2-1                0.074   thyroid transcription factor 1 isoform 2 
TAF4                  0.049   TBP-associated factor 4 
ZNF541                0.049   zinc finger protein 541 
OLIG1                 0.049   oligodendrocyte transcription factor 1 
TENC1                 0.044   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.044   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.044   tensin like C1 domain containing phosphatase isoform...
KCNH2                 0.039   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.039   voltage-gated potassium channel, subfamily H, member ...
BSN                   0.039   bassoon protein 
PPAPDC2               0.039   phosphatidic acid phosphatase type 2 domain containi...
LOC646021             0.039   PREDICTED: similar to hCG1774990 
LOC646021             0.039   PREDICTED: similar to hCG1774990 
LOC646021             0.039   PREDICTED: similar to hCG1774990 
NEU4                  0.039   sialidase 4 
ALPK3                 0.034   alpha-kinase 3 
ARID1B                0.034   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.034   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.034   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
C9orf131              0.034   hypothetical protein LOC138724 isoform D 
C9orf131              0.034   hypothetical protein LOC138724 isoform C 
C9orf131              0.034   hypothetical protein LOC138724 isoform B 
C9orf131              0.034   hypothetical protein LOC138724 isoform A 
TPRX1                 0.034   tetra-peptide repeat homeobox 
SLC4A2                0.025   solute carrier family 4, anion exchanger, member 2 ...
GAB4                  0.025   GRB2-associated binding protein family, member 4 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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