Guide to the Human Genome
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Name: LOC100128572 Sequence: fasta or formatted (181aa) NCBI GI: 239748011
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {181aa} PREDICTED: hypothetical protein
alt mRNA {181aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.6         30           4
 C cysteine            3.3          6           1
 D aspartate           3.3          6           1
 E glutamate           3.9          7           1
 F phenylalanine       0.0          0           0
 G glycine             9.9         18           2
 H histidine           0.0          0           0
 I isoleucine          1.7          3           1
 K lysine              7.7         14           3
 L leucine             6.6         12           2
 M methionine          1.7          3           1
 N asparagine          1.1          2           1
 P proline            12.7         23           3
 Q glutamine           1.7          3           1
 R arginine            6.1         11           2
 S serine             13.8         25           2
 T threonine           2.2          4           1
 V valine              5.0          9           1
 W tryptophan          2.8          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128572          1.000   PREDICTED: hypothetical protein 
LOC100128572          1.000   PREDICTED: hypothetical protein 
FLJ10404              0.061   hypothetical protein LOC54540 
SEC31A                0.052   SEC31 homolog A isoform 1 
SEC31A                0.052   SEC31 homolog A isoform 2 
SEC31A                0.052   SEC31 homolog A isoform 1 
H1FOO                 0.046   H1 histone family, member O, oocyte-specific 
BASP1                 0.040   brain abundant, membrane attached signal protein 1 [...
LOC100293492          0.040   PREDICTED: hypothetical protein 
LOC729162             0.040   PREDICTED: similar to hCG1981372 
LOC729162             0.040   PREDICTED: similar to hCG1981372 
LOC389906             0.040   PREDICTED: similar to Serine/threonine-protein kina...
MAGEE1                0.040   melanoma antigen family E, 1 
MLL                   0.040   myeloid/lymphoid or mixed-lineage leukemia protein [...
LOC100293327          0.040   PREDICTED: hypothetical protein 
LOC100291252          0.040   PREDICTED: hypothetical protein XP_002347634 
LOC100287254          0.040   PREDICTED: hypothetical protein XP_002343484 
KRTAP4-6              0.038   PREDICTED: keratin associated protein 4.6 
KIF26A                0.038   kinesin family member 26A 
TTBK2                 0.035   tau tubulin kinase 2 
TAF4                  0.035   TBP-associated factor 4 
NACA                  0.035   nascent polypeptide-associated complex alpha subuni...
ADAMTS19              0.035   ADAM metallopeptidase with thrombospondin type 1 mo...
OTOG                  0.035   PREDICTED: otogelin isoform 1 
OTOG                  0.035   PREDICTED: otogelin isoform 2 
OTOG                  0.035   PREDICTED: otogelin isoform 2 
OTOG                  0.035   PREDICTED: otogelin isoform 1 
OTOG                  0.035   PREDICTED: otogelin isoform 2 
OTOG                  0.035   PREDICTED: otogelin isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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