Search of human proteins with 239744760

Search of human proteins with 239744760

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo
sapiens]
         (351 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo ...   742   0.0  
gi|239750466 PREDICTED: hypothetical protein [Homo sapiens]           740   0.0  
gi|239755939 PREDICTED: hypothetical protein [Homo sapiens]           536   e-153
gi|54400749 keratin associated protein 5-1 [Homo sapiens]              35   0.13 
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]            34   0.17 
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]            34   0.17 
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]            34   0.17 
gi|239750880 PREDICTED: hypothetical protein XP_002347591 [Homo ...    33   0.38 
gi|149363685 hypothetical protein LOC23379 [Homo sapiens]              33   0.50 
gi|239756354 PREDICTED: hypothetical protein [Homo sapiens]            33   0.50 
gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo ...    33   0.50 
gi|188536004 zinc finger protein 469 [Homo sapiens]                    33   0.50 
gi|197333868 T-box 2 [Homo sapiens]                                    32   0.65 
gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]            32   0.65 
gi|169168706 PREDICTED: hypothetical protein [Homo sapiens]            32   0.65 
gi|169169649 PREDICTED: hypothetical protein [Homo sapiens]            32   0.65 
gi|56676337 transmembrane protein 28 [Homo sapiens]                    32   0.65 
gi|209977097 tripartite motif-containing 66 [Homo sapiens]             32   0.85 
gi|30425428 deltex homolog 3 [Homo sapiens]                            32   0.85 
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       32   1.1  
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       32   1.1  
gi|116875765 tight junction protein 1 isoform b [Homo sapiens]         31   1.5  
gi|116875767 tight junction protein 1 isoform a [Homo sapiens]         31   1.5  
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]            31   1.5  
gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]            31   1.5  
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]            31   1.5  
gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo ...    31   1.5  
gi|239747516 PREDICTED: hypothetical protein [Homo sapiens]            31   1.5  
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ...    31   1.5  
gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo ...    31   1.5  

>gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo
           sapiens]
          Length = 351

 Score =  742 bits (1916), Expect = 0.0
 Identities = 351/351 (100%), Positives = 351/351 (100%)

Query: 1   MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60
           MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE
Sbjct: 1   MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60

Query: 61  PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120
           PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG
Sbjct: 61  PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120

Query: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180
           VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL
Sbjct: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180

Query: 181 SVECVKSLPLHGPALRRQNDKHMSWGRRLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240
           SVECVKSLPLHGPALRRQNDKHMSWGRRLRATAQMPPNTFLCARLSFSPPQASRLKHVLE
Sbjct: 181 SVECVKSLPLHGPALRRQNDKHMSWGRRLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240

Query: 241 PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES 300
           PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES
Sbjct: 241 PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES 300

Query: 301 ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH 351
           ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH
Sbjct: 301 ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH 351


>gi|239750466 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 351

 Score =  740 bits (1910), Expect = 0.0
 Identities = 350/351 (99%), Positives = 350/351 (99%)

Query: 1   MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60
           MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE
Sbjct: 1   MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60

Query: 61  PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120
           PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG
Sbjct: 61  PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120

Query: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180
           VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL
Sbjct: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180

Query: 181 SVECVKSLPLHGPALRRQNDKHMSWGRRLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240
           SVECVKSLPLHGPALRRQNDKHMSWGR LRATAQMPPNTFLCARLSFSPPQASRLKHVLE
Sbjct: 181 SVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240

Query: 241 PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES 300
           PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES
Sbjct: 241 PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES 300

Query: 301 ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH 351
           ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH
Sbjct: 301 ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH 351


>gi|239755939 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 313

 Score =  536 bits (1382), Expect = e-153
 Identities = 255/270 (94%), Positives = 256/270 (94%)

Query: 1   MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60
           MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE
Sbjct: 1   MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60

Query: 61  PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120
           PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG
Sbjct: 61  PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120

Query: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180
           VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL
Sbjct: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180

Query: 181 SVECVKSLPLHGPALRRQNDKHMSWGRRLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240
           SVECVKSLPLHGPALRRQNDKHMSWGR LRATAQMPPNTFLCARLSFSPPQASRLKHVLE
Sbjct: 181 SVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240

Query: 241 PARDLLPPGHKPWPGPPSPLPGDRGPRLSP 270
           PARDLLPPGHK     P   P  R  R+ P
Sbjct: 241 PARDLLPPGHKARAPIPLRSPTHRNARVLP 270


>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
          Length = 278

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 68  SSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAG 113
           SS  +P C  KP  MC CVP   C C++     G  GCG+ G S G
Sbjct: 128 SSCCVPVCCCKP--MCCCVPA--CSCSS----CGKGGCGSCGCSKG 165


>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 224 RLSFSPPQASRLKHVLEPARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPF 277
           R S  PP+ +R  H+L P R          PG P   PGDR   L P    SPF
Sbjct: 52  RASLPPPRPARPSHLLWPKR---------LPGRPGRAPGDRRAALPPPGTRSPF 96


>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 224 RLSFSPPQASRLKHVLEPARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPF 277
           R S  PP+ +R  H+L P R          PG P   PGDR   L P    SPF
Sbjct: 52  RASLPPPRPARPSHLLWPKR---------LPGRPGRAPGDRRAALPPPGTRSPF 96


>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 224 RLSFSPPQASRLKHVLEPARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPF 277
           R S  PP+ +R  H+L P R          PG P   PGDR   L P    SPF
Sbjct: 52  RASLPPPRPARPSHLLWPKR---------LPGRPGRAPGDRRAALPPPGTRSPF 96


>gi|239750880 PREDICTED: hypothetical protein XP_002347591 [Homo
           sapiens]
          Length = 110

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 14/79 (17%)

Query: 192 GPALRR--QNDKHMSWGRRLRATAQMPPNTFLCARLSFSP-PQASRLKHVLEPARDLLPP 248
           GPA R   ++ +   W RRL A      N   CA L  +P P  S      +P++ L PP
Sbjct: 26  GPARRAGLRSPRERQWRRRLLAR-----NCTACAALPAAPAPSRSP-----DPSKRLAPP 75

Query: 249 GHKPWP-GPPSPLPGDRGP 266
             +  P   P+PLPG+R P
Sbjct: 76  RSRRSPLRAPAPLPGNRVP 94


>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
          Length = 2266

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 27   GQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDEPLPTSPFSSSSIPECLHKPARMCVC- 85
            GQ  P + T  P  +     + W E  R     +P P SP ++S+    +  P + C   
Sbjct: 1667 GQVSPFRETPVPPAM-----SPWPEDPRRASPPDPSP-SPSAASASERVVPSPLQFCAAT 1720

Query: 86   ------VPGRVCRCATGTWQLGG 102
                  VPGR+  CA+G   +GG
Sbjct: 1721 PKHALPVPGRLPPCASGHAAVGG 1743


>gi|239756354 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 110

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 14/79 (17%)

Query: 192 GPALRR--QNDKHMSWGRRLRATAQMPPNTFLCARLSFSP-PQASRLKHVLEPARDLLPP 248
           GPA R   ++ +   W RRL A      N   CA L  +P P  S      +P++ L PP
Sbjct: 26  GPARRAGLRSPRERQWRRRLLAR-----NCTACAALPAAPAPSRSP-----DPSKCLAPP 75

Query: 249 GHKPWP-GPPSPLPGDRGP 266
             +  P   P+PLPG+R P
Sbjct: 76  RSRRSPLRAPAPLPGNRVP 94


>gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo
           sapiens]
          Length = 110

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 14/79 (17%)

Query: 192 GPALRR--QNDKHMSWGRRLRATAQMPPNTFLCARLSFSP-PQASRLKHVLEPARDLLPP 248
           GPA R   ++ +   W RRL A      N   CA L  +P P  S      +P++ L PP
Sbjct: 26  GPARRAGLRSPRERQWRRRLLAR-----NCTACAALPAAPAPSRSP-----DPSKCLAPP 75

Query: 249 GHKPWP-GPPSPLPGDRGP 266
             +  P   P+PLPG+R P
Sbjct: 76  RSRRSPLRAPAPLPGNRVP 94


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 194  ALRRQNDKHMSWGRRLRATAQMPPNTFLCARLSFSPPQASRLKHVLEPA--RDLLPPGHK 251
            A + Q D+HM+  + LR   Q  P  F   R   +P Q +R      P+  R +  PG  
Sbjct: 3400 AKKEQFDRHMN--KHLRGGRQ--PFAFRGVRRPGAPGQKARALEGTLPSKRRRVAMPGSA 3455

Query: 252  PWPGPPSPLPGDRGPRLSPLTLLSPFHL 279
            P PG   P P    P LS  +L +  HL
Sbjct: 3456 PGPGEDRPPPRGSSPILSEGSLPALLHL 3483


>gi|197333868 T-box 2 [Homo sapiens]
          Length = 712

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 62  LPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVRE---- 117
           L  SPF  S+ P     P ++ V +P       TG    G    G        + E    
Sbjct: 606 LSRSPFLGSARPRLRFSPYQIPVTIPPSTSLLTTGLASEGSKAAGGNSREPSPLPELALR 665

Query: 118 KRGVGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDR 154
           K G  + G + PSG A  A   L+++  L   L   R
Sbjct: 666 KVGAPSRGALSPSGSAKEAANELQSIQRLVSGLESQR 702


>gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 399

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 111 SAGRVREKRGVGAGGPVRPSGQAWLAHGVLR-TLTYLAPDLADDRDQQQDAAQRQEDVLG 169
           + G  R  R + A  P+ P G   +     R T  YL   L +  D  +DAA+   + +G
Sbjct: 25  ATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVYLGHALGEAVDLLRDAAELAVNAVG 84

Query: 170 IVHHLGHQH-------QLSVECVKSLPLHGPALRRQN---DKHMSWGRRLRATAQMPPNT 219
           +  HLG+ H       QL +E +++  L      R+N     H S GR   A  Q     
Sbjct: 85  MA-HLGYDHGLRHAQLQLGIEVIQTRLLLLERDSRENRDPGAHASSGRCEIALQQRTEEA 143

Query: 220 FLCARLSFSPPQASRLKHVLEPARDL 245
                    PP  ++L H+LE  R L
Sbjct: 144 V------GHPPSQAQLPHLLEHIRHL 163


>gi|169168706 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 399

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 111 SAGRVREKRGVGAGGPVRPSGQAWLAHGVLR-TLTYLAPDLADDRDQQQDAAQRQEDVLG 169
           + G  R  R + A  P+ P G   +     R T  YL   L +  D  +DAA+   + +G
Sbjct: 25  ATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVYLGHALGEAVDLLRDAAELAVNAVG 84

Query: 170 IVHHLGHQH-------QLSVECVKSLPLHGPALRRQN---DKHMSWGRRLRATAQMPPNT 219
           +  HLG+ H       QL +E +++  L      R+N     H S GR   A  Q     
Sbjct: 85  MA-HLGYDHGLRHAQLQLGIEVIQTRLLLLERDSRENRDPGAHASSGRCEIALQQRTEEA 143

Query: 220 FLCARLSFSPPQASRLKHVLEPARDL 245
                    PP  ++L H+LE  R L
Sbjct: 144 V------GHPPSQAQLPHLLEHIRHL 163


>gi|169169649 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 399

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 18/146 (12%)

Query: 111 SAGRVREKRGVGAGGPVRPSGQAWLAHGVLR-TLTYLAPDLADDRDQQQDAAQRQEDVLG 169
           + G  R  R + A  P+ P G   +     R T  YL   L +  D  +DAA+   + +G
Sbjct: 25  ATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVYLGHALGEAVDLLRDAAELAVNAVG 84

Query: 170 IVHHLGHQH-------QLSVECVKSLPLHGPALRRQN---DKHMSWGRRLRATAQMPPNT 219
           +  HLG+ H       QL +E +++  L      R+N     H S GR   A  Q     
Sbjct: 85  MA-HLGYDHGLRHAQLQLGIEVIQTRLLLLERDSRENRDPGAHASSGRCEIALQQRTEEA 143

Query: 220 FLCARLSFSPPQASRLKHVLEPARDL 245
                    PP  ++L H+LE  R L
Sbjct: 144 V------GHPPSQAQLPHLLEHIRHL 163


>gi|56676337 transmembrane protein 28 [Homo sapiens]
          Length = 472

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 229 PPQASRLKHVLEPARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSP 276
           PP  +  +    P R +LP    P PG PS  PG  GPR S LT  +P
Sbjct: 80  PPWGAGRERQPVPPRAVLPLPPPP-PGEPSAPPGTCGPRYSNLTKAAP 126


>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
          Length = 1216

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 206 GRRLRATAQMPPNTFLCARLSFSPPQASRLKHVLEPARDLLPPGHKPWPGPPSPLP 261
           G   + T Q P       ++ F   Q  +L H  +  +  LPP   P P PP PLP
Sbjct: 422 GAHAQPTLQTPS-----IQVQFGHHQKLKLSHFQQQPQQQLPPPPPPLPHPPPPLP 472


>gi|30425428 deltex homolog 3 [Homo sapiens]
          Length = 347

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 242 ARDLLPPGHKPWPGPPSPLPGDRGPRL 268
           A  LLPPG +  P PP PLP    PRL
Sbjct: 127 AAPLLPPGARGLPPPPPPLPPPLPPRL 153


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 229 PPQASRLKHVLEPARDLL---PPGHKPWPGPPSPLPGDRGP 266
           PPQA+R   V  PA       PPG +   GPP   PG  GP
Sbjct: 560 PPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGP 600


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 229 PPQASRLKHVLEPARDLL---PPGHKPWPGPPSPLPGDRGP 266
           PPQA+R   V  PA       PPG +   GPP   PG  GP
Sbjct: 560 PPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGP 600


>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
          Length = 1668

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 210  RATAQMPPNTFLCARLSFSPPQASRLKHVLEPAR----DLLPPGHKPWPGPPSPLPGDRG 265
            R+  Q+PP  F      F P   +     L P+     + LP   KP P PP+    +  
Sbjct: 1117 RSYEQVPPQGFTSRAGHFEPLHGAAAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEED 1176

Query: 266  PRLSPLTLLS 275
            P + P ++L+
Sbjct: 1177 PAMKPQSVLT 1186


>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
          Length = 1748

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 210  RATAQMPPNTFLCARLSFSPPQASRLKHVLEPAR----DLLPPGHKPWPGPPSPLPGDRG 265
            R+  Q+PP  F      F P   +     L P+     + LP   KP P PP+    +  
Sbjct: 1197 RSYEQVPPQGFTSRAGHFEPLHGAAAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEED 1256

Query: 266  PRLSPLTLLS 275
            P + P ++L+
Sbjct: 1257 PAMKPQSVLT 1266


>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 461

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 62/260 (23%), Positives = 89/260 (34%), Gaps = 21/260 (8%)

Query: 20  AQRLNGTGQAHPRKGTQD---PQPLWSGL-WATWREGSRTVLVDEPLPTSPFSSSSIPEC 75
           A RL     A    G QD   P+PLW  L     R G  T           F++S +   
Sbjct: 111 APRLGPPRGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLG 170

Query: 76  LHKPARMCVCVPGRVCRCATGT--WQLGGSGCGAGGLSAGRVREKRGVGAGGPVRPSGQA 133
            H+         G   R   G+  W  G      G  S   +  +   G GG +R SG A
Sbjct: 171 THRIGEGV----GGEKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPA 226

Query: 134 WLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQLSVECVKSLPLHGP 193
                 LR+     P L    D+ ++  + ++  LG V        L++    +     P
Sbjct: 227 -TPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAA--SP 283

Query: 194 ALRRQNDKHMSWGRRLRATAQMPPN--TFLCARLSFSPPQASRLKHVLEPARDLLPPGHK 251
            L+      +  G      AQ  P     L  RL    P+ S+      P+R   P   +
Sbjct: 284 CLQVAQQSFLELG------AQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQ 337

Query: 252 PWPGPPSPLPGDRGPRLSPL 271
              GP +P+    GP   PL
Sbjct: 338 LGRGPATPMLHGLGPVPPPL 357


>gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 329

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 102 GSGCGAG-GLSAGRVREKRGVGAGGPVRPSGQAWLAH 137
           G+G GAG G  AGR  ++    AGGP R  G +WL H
Sbjct: 285 GAGAGAGVGTRAGRQGDRAPGEAGGP-RGIGNSWLPH 320


>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 461

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 62/260 (23%), Positives = 89/260 (34%), Gaps = 21/260 (8%)

Query: 20  AQRLNGTGQAHPRKGTQD---PQPLWSGL-WATWREGSRTVLVDEPLPTSPFSSSSIPEC 75
           A RL     A    G QD   P+PLW  L     R G  T           F++S +   
Sbjct: 111 APRLGPPRGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLG 170

Query: 76  LHKPARMCVCVPGRVCRCATGT--WQLGGSGCGAGGLSAGRVREKRGVGAGGPVRPSGQA 133
            H+         G   R   G+  W  G      G  S   +  +   G GG +R SG A
Sbjct: 171 THRIGEGV----GGEKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPA 226

Query: 134 WLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQLSVECVKSLPLHGP 193
                 LR+     P L    D+ ++  + ++  LG V        L++    +     P
Sbjct: 227 -TPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAA--SP 283

Query: 194 ALRRQNDKHMSWGRRLRATAQMPPN--TFLCARLSFSPPQASRLKHVLEPARDLLPPGHK 251
            L+      +  G      AQ  P     L  RL    P+ S+      P+R   P   +
Sbjct: 284 CLQVAQQSFLELG------AQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQ 337

Query: 252 PWPGPPSPLPGDRGPRLSPL 271
              GP +P+    GP   PL
Sbjct: 338 LGRGPATPMLHGLGPVPPPL 357


>gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo
           sapiens]
          Length = 329

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 102 GSGCGAG-GLSAGRVREKRGVGAGGPVRPSGQAWLAH 137
           G+G GAG G  AGR  ++    AGGP R  G +WL H
Sbjct: 285 GAGAGAGVGTRAGRQGDRAPGEAGGP-RGIGNSWLPH 320


>gi|239747516 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 209

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 88  GRVCRCATGT--WQLGGSGCGAGGLSAG-----RVREKRGVGAGGPVRPSG 131
           G  CR +  +  W+ GG G G GG S G     R+R   G+G GG  R  G
Sbjct: 136 GPCCRSSLSSSRWEAGG-GAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGG 185


>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
           sapiens]
          Length = 461

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 62/260 (23%), Positives = 89/260 (34%), Gaps = 21/260 (8%)

Query: 20  AQRLNGTGQAHPRKGTQD---PQPLWSGL-WATWREGSRTVLVDEPLPTSPFSSSSIPEC 75
           A RL     A    G QD   P+PLW  L     R G  T           F++S +   
Sbjct: 111 APRLGPPRGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLG 170

Query: 76  LHKPARMCVCVPGRVCRCATGT--WQLGGSGCGAGGLSAGRVREKRGVGAGGPVRPSGQA 133
            H+         G   R   G+  W  G      G  S   +  +   G GG +R SG A
Sbjct: 171 THRIGEGV----GGEKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPA 226

Query: 134 WLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQLSVECVKSLPLHGP 193
                 LR+     P L    D+ ++  + ++  LG V        L++    +     P
Sbjct: 227 -TPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAA--SP 283

Query: 194 ALRRQNDKHMSWGRRLRATAQMPPN--TFLCARLSFSPPQASRLKHVLEPARDLLPPGHK 251
            L+      +  G      AQ  P     L  RL    P+ S+      P+R   P   +
Sbjct: 284 CLQVAQQSFLELG------AQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQ 337

Query: 252 PWPGPPSPLPGDRGPRLSPL 271
              GP +P+    GP   PL
Sbjct: 338 LGRGPATPMLHGLGPVPPPL 357


>gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo
           sapiens]
          Length = 329

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 102 GSGCGAG-GLSAGRVREKRGVGAGGPVRPSGQAWLAH 137
           G+G GAG G  AGR  ++    AGGP R  G +WL H
Sbjct: 285 GAGAGAGVGTRAGRQGDRAPGEAGGP-RGIGNSWLPH 320


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,690,822
Number of Sequences: 37866
Number of extensions: 1051046
Number of successful extensions: 5829
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 5555
Number of HSP's gapped (non-prelim): 388
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.