Guide to the Human Genome
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Name: LOC100293638 Sequence: fasta or formatted (313aa) NCBI GI: 239755939
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         29           2
 C cysteine            2.6          8           1
 D aspartate           4.5         14           2
 E glutamate           3.2         10           2
 F phenylalanine       1.3          4           1
 G glycine            10.2         32           2
 H histidine           6.7         21           3
 I isoleucine          1.0          3           1
 K lysine              2.6          8           1
 L leucine            10.9         34           3
 M methionine          1.3          4           1
 N asparagine          1.3          4           1
 P proline             9.3         29           2
 Q glutamine           6.4         20           3
 R arginine            8.9         28           2
 S serine              7.3         23           4
 T threonine           5.1         16           1
 V valine              5.8         18           1
 W tryptophan          2.2          7           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288270          0.807   PREDICTED: hypothetical protein 
LOC100288270          0.802   PREDICTED: hypothetical protein XP_002343262 
KRTAP5-1              0.016   keratin associated protein 5-1 
C8orf30B              0.014   PREDICTED: hypothetical protein LOC728071 
C8orf30A              0.014   brain protein 16 
NFATC2IP              0.014   nuclear factor of activated T-cells, cytoplasmic, ca...
LOC100131283          0.013   PREDICTED: hypothetical protein 
LOC100131283          0.013   PREDICTED: hypothetical protein 
LOC100131283          0.013   PREDICTED: hypothetical protein 
KIAA0947              0.013   hypothetical protein LOC23379 
LOC100292443          0.013   PREDICTED: hypothetical protein 
TBX2                  0.011   T-box 2 
DNM2                  0.011   dynamin 2 isoform 4 
DNM2                  0.011   dynamin 2 isoform 2 
DNM2                  0.011   dynamin 2 isoform 1 
DNM2                  0.011   dynamin 2 isoform 3 
B4GALNT3              0.011   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
BAZ1A                 0.011   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.011   bromodomain adjacent to zinc finger domain, 1A isofo...
APC2                  0.011   adenomatosis polyposis coli 2 
LOC100293869          0.009   PREDICTED: hypothetical protein 
LOC100293337          0.009   PREDICTED: hypothetical protein 
LOC100290919          0.009   PREDICTED: hypothetical protein XP_002347810 
LOC100288007          0.009   PREDICTED: hypothetical protein 
LOC100289012          0.009   PREDICTED: hypothetical protein XP_002343616 
LOC100288369          0.009   PREDICTED: hypothetical protein XP_002343563 
LOC100288007          0.009   PREDICTED: hypothetical protein XP_002342192 
RADIL                 0.009   Rap GTPase interactor 
C12orf61              0.009   hypothetical protein LOC283416 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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