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Search of human proteins with 239744649
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo
sapiens]
(232 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo ... 475 e-134
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 468 e-132
gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo ... 468 e-132
gi|239757132 PREDICTED: hypothetical protein [Homo sapiens] 34 0.093
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 33 0.16
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 33 0.16
gi|58761508 midnolin [Homo sapiens] 33 0.16
gi|5453579 bone morphogenetic protein 1 isoform 3 precursor [Hom... 33 0.21
gi|125628665 hypothetical protein LOC388284 [Homo sapiens] 33 0.21
gi|153792575 hypothetical protein LOC90120 [Homo sapiens] 33 0.21
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 32 0.35
gi|24497609 nucleoporin 62kDa [Homo sapiens] 32 0.60
gi|24497607 nucleoporin 62kDa [Homo sapiens] 32 0.60
gi|24497605 nucleoporin 62kDa [Homo sapiens] 32 0.60
gi|24497603 nucleoporin 62kDa [Homo sapiens] 32 0.60
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 32 0.60
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 31 0.79
gi|153946393 macrophage stimulating 1 receptor precursor [Homo s... 31 1.0
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 31 1.0
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 31 1.0
gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens] 31 1.0
gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens] 31 1.0
gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens] 31 1.0
gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens] 31 1.0
gi|144226234 metastasis suppressor 1 [Homo sapiens] 31 1.0
gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens] 30 1.3
gi|42475941 zinc finger protein 261 [Homo sapiens] 30 1.3
gi|4827067 zinc finger protein 261 [Homo sapiens] 30 1.3
gi|115527097 CDC42-binding protein kinase beta [Homo sapiens] 30 1.3
gi|154146231 DMRT-like family A2 [Homo sapiens] 30 1.3
>gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo
sapiens]
Length = 232
Score = 475 bits (1223), Expect = e-134
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA
Sbjct: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
Query: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPIRLAVPGRSAPAVALACSRPFST 120
VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPIRLAVPGRSAPAVALACSRPFST
Sbjct: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPIRLAVPGRSAPAVALACSRPFST 120
Query: 121 PTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESS 180
PTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESS
Sbjct: 121 PTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESS 180
Query: 181 GLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 232
GLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP
Sbjct: 181 GLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 232
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 468 bits (1205), Expect = e-132
Identities = 231/233 (99%), Positives = 231/233 (99%), Gaps = 1/233 (0%)
Query: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA
Sbjct: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
Query: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPIR-LAVPGRSAPAVALACSRPFS 119
VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPI LAVPGRSAPAVALACSRPFS
Sbjct: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120
Query: 120 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 179
TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES
Sbjct: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180
Query: 180 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 232
SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP
Sbjct: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 233
>gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo
sapiens]
Length = 233
Score = 468 bits (1205), Expect = e-132
Identities = 231/233 (99%), Positives = 231/233 (99%), Gaps = 1/233 (0%)
Query: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA
Sbjct: 1 MSKAASVWMHDPPRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQEEVNHA 60
Query: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPIR-LAVPGRSAPAVALACSRPFS 119
VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPI LAVPGRSAPAVALACSRPFS
Sbjct: 61 VGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPISGLAVPGRSAPAVALACSRPFS 120
Query: 120 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 179
TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES
Sbjct: 121 TPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRES 180
Query: 180 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 232
SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP
Sbjct: 181 SGLPFSLLAAHLAEGHEIVFHVGATNALWLVAVVSDDHGNRWVEAADTGDESP 233
>gi|239757132 PREDICTED: hypothetical protein [Homo sapiens]
Length = 583
Score = 34.3 bits (77), Expect = 0.093
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 82 AVP--EAWGAGLHAQQLPIRLAVP-GRSAPAVA--LACSRPFSTPTSCSPCPTRSSGVRS 136
AVP E WG GL Q+ R+A+P G++ PA A ++ SR +S S T+SSG
Sbjct: 216 AVPLREEWGQGLGEQRS--RMALPAGQTPPATAPSVSVSRSLDCSSSVSRWDTKSSGRMR 273
Query: 137 STSTSLSSRVRAVKTKSSSTHSTWSSNH 164
++ + + ++ + WS H
Sbjct: 274 KEFVGITLLLHDLASQKFPSGGPWSDGH 301
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 33.5 bits (75), Expect = 0.16
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 117 PFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWS--------SNHYPGG 168
P STPT+ P + +SG S ST S A T SS HST S S+ PG
Sbjct: 327 PGSTPTTHFPASSTTSG-HSEKSTIFHSSPDASGTTPSSAHSTTSGVSEESSTSHSQPGS 385
Query: 169 CRLRAHP-LRESSGLPFSLLAAHLAEG 194
A P +SGL +H ++G
Sbjct: 386 THTTAFPDSTTTSGLSQEPTTSHSSQG 412
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 96 LPIRLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSS 155
LP PG S + S P S T+ SP T SSGV ++TS S + S
Sbjct: 112 LPGSTTTPGLSEKSTTFHSS-PRSPATTLSPASTTSSGVSEESTTSHS--------RPGS 162
Query: 156 THST 159
TH+T
Sbjct: 163 THTT 166
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 20/69 (28%)
Query: 115 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST------------WSS 162
S P S T+ SP T SSGV ++TS S + STH+T W +
Sbjct: 496 SSPRSPDTTLSPASTTSSGVSEESTTSHS--------RPGSTHTTAFPGSTTMPGQHWIA 547
Query: 163 NHYPGGCRL 171
H CRL
Sbjct: 548 THNTVPCRL 556
>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
Length = 456
Score = 33.5 bits (75), Expect = 0.16
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 117 PFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWS--------SNHYPGG 168
P STPT+ P + +SG S ST S A T SS HST S S+ PG
Sbjct: 221 PGSTPTTHFPASSTTSG-HSEKSTIFHSSPDASGTTPSSAHSTTSGVSEESSTSHSQPGS 279
Query: 169 CRLRAHP-LRESSGLPFSLLAAHLAEG 194
A P +SGL +H ++G
Sbjct: 280 THTTAFPDSTTTSGLSQEPTTSHSSQG 306
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 96 LPIRLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSS 155
LP PG S + S P S T+ SP T SSGV ++TS S + S
Sbjct: 6 LPGSTTTPGLSEKSTTFHSS-PRSPATTLSPASTTSSGVSEESTTSHS--------RPGS 56
Query: 156 THST 159
TH+T
Sbjct: 57 THTT 60
Score = 28.5 bits (62), Expect = 5.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 115 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST 159
S P S T+ SP T SSGV ++TS S + STH+T
Sbjct: 390 SSPRSPDTTLSPASTTSSGVSEESTTSHS--------RPGSTHTT 426
>gi|58761508 midnolin [Homo sapiens]
Length = 468
Score = 33.5 bits (75), Expect = 0.16
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 5/136 (3%)
Query: 37 AAEAGVETDLAHLVSPRQE-EVNHAVGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQ 95
A E+ ET ++ +S R + VGDH + +L + APL A A A +
Sbjct: 120 ALESLTETQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQHRHVLAAAAAAAAAR 179
Query: 96 LPIRLAVPGRSAPAVALACSRPFSTPTS---CSPCPTRSSGVRS-STSTSLSSRVRAVKT 151
+A P S + +R PTS SP P + RS + ST+ ++ T
Sbjct: 180 GDPSIASPVSSPCRPVSSAARVPPVPTSPSPASPSPITAGSFRSHAASTTCPEQMDCSPT 239
Query: 152 KSSSTHSTWSSNHYPG 167
SSS S+ PG
Sbjct: 240 ASSSASPGASTTSTPG 255
>gi|5453579 bone morphogenetic protein 1 isoform 3 precursor [Homo
sapiens]
Length = 986
Score = 33.1 bits (74), Expect = 0.21
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 133 GVRSSTSTSLSSRVRA-VKTKSSSTHSTWSSNHYPGG 168
G ++S +T +VRA VKTK +H+ + N+YPGG
Sbjct: 851 GFQASHATECGGQVRADVKTKDLYSHAQFGDNNYPGG 887
>gi|125628665 hypothetical protein LOC388284 [Homo sapiens]
Length = 317
Score = 33.1 bits (74), Expect = 0.21
Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 19/127 (14%)
Query: 11 DPPRRRSRSQPEGNQ---AHPRRILG--MSHAAEAGVETDL--------AHLVSPRQEEV 57
+P +S P Q A R+ LG + HA + V L A + P + V
Sbjct: 138 EPEDSQSEPSPSAKQHKKAKKRKSLGAPVLHAVASMVSAPLETLRLERKAQRLRPLYQYV 197
Query: 58 NHAVGD-HAAWEAD-ELVVEAAPLPEAVPEAWGAGLHAQQLPIRLAVPGRSAPAVALACS 115
N+ + + A + D E VEA VPE G +QL L + G P +AL C
Sbjct: 198 NYCNPELNQAGKGDGEAEVEAEAELAPVPEEGGV----EQLQALLPLAGELGPGLALPCP 253
Query: 116 RPFSTPT 122
P TPT
Sbjct: 254 SPLVTPT 260
>gi|153792575 hypothetical protein LOC90120 [Homo sapiens]
Length = 135
Score = 33.1 bits (74), Expect = 0.21
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%)
Query: 78 PLPEAVPEAWGAGLHAQQLPIRLAVPGRSAPAVAL---ACSRPFSTPTSCSPCPTRSSGV 134
P P P A AG + P R G AP+ A AC RP C+P PT +
Sbjct: 11 PPPPLRPSAAAAGAQCRSCPFR----GGCAPSTARTPPACMRPAGP---CAP-PTWPA-- 60
Query: 135 RSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLR 177
ST+TS + RA T SS+++ST ++ C LR +R
Sbjct: 61 -PSTTTSTCTSRRAGCTASSASYSTLAA-----ACSLRRSGVR 97
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 32.3 bits (72), Expect = 0.35
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 113 ACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSN 163
+CS S+ +S S C SG SS+S+S SS A + SSST S+ SS+
Sbjct: 2142 SCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSS---ASSSSSSSTSSSSSSS 2189
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 31.6 bits (70), Expect = 0.60
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 26/122 (21%)
Query: 76 AAPLPEAVPEAWGAGLHAQQLPIRLAVPGRSAPAVALACSRPFSTPTSCSPCPT------ 129
AAP P A + G L A +AP + TP + + PT
Sbjct: 206 AAPTPTATITSTGPSLFASIA---------TAPTSSATTGLSLCTPVTTAGAPTAGTQGF 256
Query: 130 --RSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESSGLPFSLL 187
++ G S TST+ S+ A T +SS+ +T G L PL +G+P +
Sbjct: 257 SLKAPGAASGTSTTTSTAATATATTTSSSSTT--------GFALNLKPL-APAGIPSNTA 307
Query: 188 AA 189
AA
Sbjct: 308 AA 309
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 31.6 bits (70), Expect = 0.60
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 26/122 (21%)
Query: 76 AAPLPEAVPEAWGAGLHAQQLPIRLAVPGRSAPAVALACSRPFSTPTSCSPCPT------ 129
AAP P A + G L A +AP + TP + + PT
Sbjct: 206 AAPTPTATITSTGPSLFASIA---------TAPTSSATTGLSLCTPVTTAGAPTAGTQGF 256
Query: 130 --RSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESSGLPFSLL 187
++ G S TST+ S+ A T +SS+ +T G L PL +G+P +
Sbjct: 257 SLKAPGAASGTSTTTSTAATATATTTSSSSTT--------GFALNLKPL-APAGIPSNTA 307
Query: 188 AA 189
AA
Sbjct: 308 AA 309
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 31.6 bits (70), Expect = 0.60
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 26/122 (21%)
Query: 76 AAPLPEAVPEAWGAGLHAQQLPIRLAVPGRSAPAVALACSRPFSTPTSCSPCPT------ 129
AAP P A + G L A +AP + TP + + PT
Sbjct: 206 AAPTPTATITSTGPSLFASIA---------TAPTSSATTGLSLCTPVTTAGAPTAGTQGF 256
Query: 130 --RSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESSGLPFSLL 187
++ G S TST+ S+ A T +SS+ +T G L PL +G+P +
Sbjct: 257 SLKAPGAASGTSTTTSTAATATATTTSSSSTT--------GFALNLKPL-APAGIPSNTA 307
Query: 188 AA 189
AA
Sbjct: 308 AA 309
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 31.6 bits (70), Expect = 0.60
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 26/122 (21%)
Query: 76 AAPLPEAVPEAWGAGLHAQQLPIRLAVPGRSAPAVALACSRPFSTPTSCSPCPT------ 129
AAP P A + G L A +AP + TP + + PT
Sbjct: 206 AAPTPTATITSTGPSLFASIA---------TAPTSSATTGLSLCTPVTTAGAPTAGTQGF 256
Query: 130 --RSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESSGLPFSLL 187
++ G S TST+ S+ A T +SS+ +T G L PL +G+P +
Sbjct: 257 SLKAPGAASGTSTTTSTAATATATTTSSSSTT--------GFALNLKPL-APAGIPSNTA 307
Query: 188 AA 189
AA
Sbjct: 308 AA 309
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 31.6 bits (70), Expect = 0.60
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 101 AVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVR--SSTSTSLSSRVRAVKTKSSSTHS 158
A +A A + +P + P P P R++ R SS+S+S SS R ++SSS S
Sbjct: 340 AAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSS 399
Query: 159 TWS---SNHYPGGCRLRA 173
+ S +Y G R+
Sbjct: 400 SRSRRGGGYYRSGRHARS 417
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 31.2 bits (69), Expect = 0.79
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 51 SPRQEEVNHAVGDHAAWEADELVVEAAP------LPEAVPEAWGAG-LHAQQLPIRLAVP 103
S R EE ++ H++ +A +V A L E+ +G + LP P
Sbjct: 825 SGRSEE---SIASHSSQDATGTIVLPARSTNSVLLGESTTSPISSGSMETTALPGSTTTP 881
Query: 104 GRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST 159
G S + S P S T+ SP T SSGV ++TS S + STH+T
Sbjct: 882 GLSERSTTFHSS-PRSPATTLSPASTTSSGVSEESTTSHS--------RPGSTHTT 928
Score = 29.3 bits (64), Expect = 3.0
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 115 SRPFSTPTSCSPCPTRSSG-------VRSST---STSLSSRVRAVKTKSSSTHSTWSSNH 164
SRP ST T+ P T +SG V SST T+LS + S+T +W S++
Sbjct: 646 SRPGSTETTLLPDNTTASGLLEASMPVHSSTRSPHTTLSPAGSTTRQGESTTFHSWPSSN 705
Query: 165 -----YPGGCRLRAHPLRESSGLPFSLLAAHLA 192
P P S G P S+ H++
Sbjct: 706 DTRPAPPTTTSAFVEPSTTSHGSPSSIPTTHIS 738
Score = 28.5 bits (62), Expect = 5.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 115 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST 159
S P S T+ SP T SSGV ++TS S + STH+T
Sbjct: 1003 SSPRSPDTTLSPASTTSSGVSEESTTSHS--------RPGSTHTT 1039
>gi|153946393 macrophage stimulating 1 receptor precursor [Homo
sapiens]
Length = 1400
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 13 PRRRSRSQPEGNQAHPRRILGMSHAAEAGVETDLAHLVSPRQE 55
P+RR R PEG Q +P +L ++H+A G + ++ QE
Sbjct: 304 PKRRRRGAPEGGQPYP--VLRVAHSAPVGAQLATELSIAEGQE 344
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 96 LPIRLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSS 155
LP PG S + S P S T+ SP T SSGV ++TS +++ S
Sbjct: 953 LPGSTTTPGLSERSTTFHSS-PRSPATTLSPASTTSSGVSEESTTS--------RSRPGS 1003
Query: 156 THST 159
TH+T
Sbjct: 1004 THTT 1007
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 96 LPIRLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSS 155
LP PG S + S P S T+ SP T SSGV ++TS S + S
Sbjct: 2036 LPGSTTTPGLSEKSTTFHSS-PRSPATTLSPASTTSSGVSEESTTSHS--------RPGS 2086
Query: 156 THST 159
TH+T
Sbjct: 2087 THTT 2090
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 96 LPIRLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSS 155
LP PG S + S P S T+ SP T SSGV ++TS S + S
Sbjct: 3593 LPGSTTTPGLSEKSTTFHSS-PRSPATTLSPASTTSSGVSEESTTSHS--------RPGS 3643
Query: 156 THST 159
TH+T
Sbjct: 3644 THTT 3647
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 117 PFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWS 161
P STPT+ P + +SG S ST S A T SS HST S
Sbjct: 1168 PGSTPTTHFPASSTTSG-HSEKSTIFHSSPDASGTTPSSAHSTTS 1211
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 117 PFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWS 161
P STPT+ P + +SG S ST S A T SS HST S
Sbjct: 2251 PGSTPTTHFPASSTTSG-HSEKSTIFHSSPDASGTTPSSAHSTTS 2294
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 117 PFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWS 161
P STPT+ P + +SG S ST S A T SS HST S
Sbjct: 2725 PGSTPTTHFPASSTTSG-HSEKSTIFHSSPDASGTTPSSAHSTTS 2768
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 117 PFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWS 161
P STPT+ P + +SG S ST S A T SS HST S
Sbjct: 3808 PGSTPTTHFPASSTTSG-HSEKSTIFHSSPDASGTTPSSAHSTTS 3851
Score = 28.5 bits (62), Expect = 5.1
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 115 SRPFSTPTSCSPCPTRSSG-------VRSST---STSLSSRVRAVKTKSSSTHSTWSSNH 164
SRP ST T+ P T +SG V SST T+LS + S+T +W S+
Sbjct: 725 SRPGSTETTLLPDNTTASGLLEASMPVHSSTRSPHTTLSPAGSTTRQGESTTFHSWPSSK 784
Query: 165 -----YPGGCRLRAHPLRESSGLPFSLLAAHLA 192
P P S G P S+ H++
Sbjct: 785 DTRPAPPTTTSAFVEPSTTSHGSPSSIPTTHIS 817
Score = 28.5 bits (62), Expect = 5.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 115 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST 159
S P S T+ SP T SSGV ++TS S + STH+T
Sbjct: 1696 SSPRSPDTTLSPASTTSSGVSEESTTSHS--------RPGSTHTT 1732
Score = 28.5 bits (62), Expect = 5.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 115 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST 159
S P S T+ SP T SSGV ++TS S + STH+T
Sbjct: 3253 SSPRSPDTTLSPASTTSSGVSEESTTSHS--------RPGSTHTT 3289
Score = 27.7 bits (60), Expect = 8.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 115 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNH 164
S+P ST ++ SP T + G+ S ST++ S R + HST +S H
Sbjct: 1277 SQPGSTHSTVSPASTTTPGL-SEESTTVYSSSRGSTETTVFPHSTTTSVH 1325
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 96 LPIRLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSS 155
LP PG S + S P S T+ SP T SSGV ++TS +++ S
Sbjct: 440 LPGSTTTPGLSERSTTFHSS-PRSPATTLSPASTTSSGVSEESTTS--------RSRPGS 490
Query: 156 THST 159
TH+T
Sbjct: 491 THTT 494
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 117 PFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWS 161
P STPT+ P + +SG S ST S A T SS HST S
Sbjct: 655 PGSTPTTHFPASSTTSG-HSEKSTIFHSSPDASGTTPSSAHSTTS 698
Score = 28.5 bits (62), Expect = 5.1
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 115 SRPFSTPTSCSPCPTRSSG-------VRSST---STSLSSRVRAVKTKSSSTHSTWSSNH 164
SRP ST T+ P T +SG V SST T+LS + S+T +W S+
Sbjct: 212 SRPGSTETTLLPDNTTASGLLEASMPVHSSTRSPHTTLSPAGSTTRQGESTTFHSWPSSK 271
Query: 165 -----YPGGCRLRAHPLRESSGLPFSLLAAHLA 192
P P S G P S+ H++
Sbjct: 272 DTRPAPPTTTSAFVEPSTTSHGSPSSIPTTHIS 304
Score = 28.5 bits (62), Expect = 5.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 115 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHST 159
S P S T+ SP T SSGV ++TS S + STH+T
Sbjct: 1183 SSPRSPDTTLSPASTTSSGVSEESTTSHS--------RPGSTHTT 1219
Score = 27.7 bits (60), Expect = 8.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 115 SRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNH 164
S+P ST ++ SP T + G+ S ST++ S R + HST +S H
Sbjct: 764 SQPGSTHSTVSPASTTTPGL-SEESTTVYSSSRGSTETTVFPHSTTTSVH 812
>gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]
Length = 667
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 97 PIRLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSST 156
P L VPG A V S + P SP PT+ + SS+S + +V ++ T + +
Sbjct: 494 PGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGS 553
Query: 157 HSTWSS 162
ST +S
Sbjct: 554 GSTTTS 559
>gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]
Length = 667
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 97 PIRLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSST 156
P L VPG A V S + P SP PT+ + SS+S + +V ++ T + +
Sbjct: 494 PGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGS 553
Query: 157 HSTWSS 162
ST +S
Sbjct: 554 GSTTTS 559
>gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 97 PIRLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSST 156
P L VPG A V S + P SP PT+ + SS+S + +V ++ T + +
Sbjct: 504 PGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGS 563
Query: 157 HSTWSS 162
ST +S
Sbjct: 564 GSTTTS 569
>gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 97 PIRLAVPGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSST 156
P L VPG A V S + P SP PT+ + SS+S + +V ++ T + +
Sbjct: 504 PGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGS 563
Query: 157 HSTWSS 162
ST +S
Sbjct: 564 GSTTTS 569
>gi|144226234 metastasis suppressor 1 [Homo sapiens]
Length = 755
Score = 30.8 bits (68), Expect = 1.0
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 118 FSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLR 177
+ TP S SP T S +SS +SL+S V + ++SS +HS S+HY R R+ L
Sbjct: 256 YQTPPS-SPSTTMSR--KSSVCSSLNS-VNSSDSRSSGSHSHSPSSHY----RYRSSNLA 307
Query: 178 ESSGLPFSLLAAH 190
+ + + S +++H
Sbjct: 308 QQAPVRLSSVSSH 320
>gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]
Length = 642
Score = 30.4 bits (67), Expect = 1.3
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
Query: 100 LAVPG-RSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHS 158
LA+P RS ++AL R + T+ C + S V S + S + ++++ SST
Sbjct: 183 LALPSHRSHSSLALPSLRSHFSSTALHSCGSHFSPVSPSHRSHSSLALPSLRSHFSSTAL 242
Query: 159 TWSSNHY-----PGGCRLRAHPLRESSGLPFSLLAAHLAEGHEIVFHVGATNALWLVA 211
+H+ C +R P R LP S A + H + W ++
Sbjct: 243 PSCGSHFSPVGSAAACEMRPDPRRPHLPLPNSPCAGQVDAAHTYLSPTHPARERWTLS 300
>gi|42475941 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 30.4 bits (67), Expect = 1.3
Identities = 40/157 (25%), Positives = 55/157 (35%), Gaps = 44/157 (28%)
Query: 51 SPRQEEVNHAVGDHAAWEADELVVEAAP---LPEAVPEAWGAGLH-----------AQQL 96
+P EV+H AW+A + +E P PE VP GAG + A
Sbjct: 89 APSPPEVDHGPEGTLAWDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGLLEPLAPDS 148
Query: 97 PIRLAVPG-RSAPAVALACSR----------PFSTPTSCSPCPTRSSGVRSSTSTSLSSR 145
PI L P ++A +R P P S + P+ S G +L
Sbjct: 149 PITLQSPHIEEEETTSIATARRGSPGQEEELPQGQPQSPNAPPSPSVG------ETLGDG 202
Query: 146 VRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESSGL 182
+ + +TK PGG AHP GL
Sbjct: 203 INSSQTK-------------PGGSSPPAHPSLPGDGL 226
>gi|4827067 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 30.4 bits (67), Expect = 1.3
Identities = 40/157 (25%), Positives = 55/157 (35%), Gaps = 44/157 (28%)
Query: 51 SPRQEEVNHAVGDHAAWEADELVVEAAP---LPEAVPEAWGAGLH-----------AQQL 96
+P EV+H AW+A + +E P PE VP GAG + A
Sbjct: 89 APSPPEVDHGPEGTLAWDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGLLEPLAPDS 148
Query: 97 PIRLAVPG-RSAPAVALACSR----------PFSTPTSCSPCPTRSSGVRSSTSTSLSSR 145
PI L P ++A +R P P S + P+ S G +L
Sbjct: 149 PITLQSPHIEEEETTSIATARRGSPGQEEELPQGQPQSPNAPPSPSVG------ETLGDG 202
Query: 146 VRAVKTKSSSTHSTWSSNHYPGGCRLRAHPLRESSGL 182
+ + +TK PGG AHP GL
Sbjct: 203 INSSQTK-------------PGGSSPPAHPSLPGDGL 226
>gi|115527097 CDC42-binding protein kinase beta [Homo sapiens]
Length = 1711
Score = 30.4 bits (67), Expect = 1.3
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 77 APLPEAVPEAWGAGLHAQQLPIR-----LAVPGRSAPAVALACSRP---------FSTPT 122
AP PEA P A Q+ R AVP + A+ALA +P FS+PT
Sbjct: 978 APKPEASPSMSVAASEQQEDMARPPQRPSAVPLPTTQALALAGPKPKAHQFSIKSFSSPT 1037
Query: 123 SCSPCPTRSSGV 134
CS C + G+
Sbjct: 1038 QCSHCTSLMVGL 1049
>gi|154146231 DMRT-like family A2 [Homo sapiens]
Length = 542
Score = 30.4 bits (67), Expect = 1.3
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 49 LVSPRQEEVNH-----AVGDHAAWEADELVVEAAPLPEAVPEAWGAGLHAQQLPIRLAV- 102
+V ++ +NH A G A D+ V AA A +AW + + A A
Sbjct: 343 VVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAA---AADDAWPSRVDAAAAAAAAAGG 399
Query: 103 PGRSAPAVALACSRPFSTPTSCSPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSS 162
PG AP A + P P + G SLSSR + +++H +
Sbjct: 400 PGLPAPLQAGPAAPPHHRPLLAGAMAPGALG-------SLSSRSAFSPLQPNASHFGADA 452
Query: 163 NHYPGGCRLRAHPLRESSGLPFSLLAAH 190
YP G L PLR L +S AAH
Sbjct: 453 GAYPLGAPLGLSPLR----LAYSAAAAH 476
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.126 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,538,723
Number of Sequences: 37866
Number of extensions: 498124
Number of successful extensions: 2009
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 1824
Number of HSP's gapped (non-prelim): 263
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.