Guide to the Human Genome
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Name: LOC100293070 Sequence: fasta or formatted (583aa) NCBI GI: 239757132
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         59           3
 C cysteine            2.6         15           2
 D aspartate           2.9         17           1
 E glutamate           4.5         26           2
 F phenylalanine       2.1         12           1
 G glycine             9.1         53           3
 H histidine           3.4         20           1
 I isoleucine          1.5          9           1
 K lysine              3.3         19           2
 L leucine            11.8         69           3
 M methionine          2.1         12           1
 N asparagine          0.5          3           1
 P proline             7.2         42           2
 Q glutamine           4.8         28           1
 R arginine           10.1         59           3
 S serine             10.5         61           3
 T threonine           4.5         26           2
 V valine              5.8         34           2
 W tryptophan          2.4         14           1
 Y tyrosine            0.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291077          0.355   PREDICTED: hypothetical protein XP_002347941 
LOC100288221          0.355   PREDICTED: hypothetical protein XP_002344287 
KSR2                  0.009   kinase suppressor of ras 2 
LOC100292157          0.009   PREDICTED: hypothetical protein 
LOC100290926          0.009   PREDICTED: hypothetical protein XP_002347568 
LOC100288995          0.009   PREDICTED: hypothetical protein XP_002343379 
FBXO31                0.009   F-box protein 31 
PPRC1                 0.009   peroxisome proliferator-activated receptor gamma, co...
LOC100292773          0.009   PREDICTED: hypothetical protein 
LOC100290063          0.009   PREDICTED: hypothetical protein XP_002346992 
LOC100287283          0.009   PREDICTED: hypothetical protein XP_002342840 
LOC100287283          0.009   PREDICTED: hypothetical protein 
LOC100289202          0.008   PREDICTED: hypothetical protein XP_002343213 
FUBP1                 0.008   far upstream element-binding protein 
MLLT3                 0.008   myeloid/lymphoid or mixed-lineage leukemia (trithor...
PRPF4B                0.008   serine/threonine-protein kinase PRP4K 
LOC100293005          0.007   PREDICTED: hypothetical protein 
LOC100289780          0.007   PREDICTED: hypothetical protein XP_002347375 
FIGNL2                0.007   fidgetin-like 2 
ABCB10                0.007   ATP-binding cassette, sub-family B, member 10 [Homo...
LOC100292589          0.007   PREDICTED: hypothetical protein 
LOC100290121          0.007   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.007   PREDICTED: hypothetical protein XP_002342721 
FAM83E                0.006   hypothetical protein LOC54854 
MYO15A                0.006   myosin XV 
LOC100292845          0.006   PREDICTED: hypothetical protein 
LOC100289230          0.006   PREDICTED: hypothetical protein XP_002342600 
LTBP4                 0.006   latent transforming growth factor beta binding prot...
SDF2L1                0.006   stromal cell-derived factor 2-like 1 precursor [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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