Guide to the Human Genome
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Name: LOC100287736 Sequence: fasta or formatted (139aa) NCBI GI: 239744382
Description:

PREDICTED: hypothetical protein XP_002343132

Not currently referenced in the text

Other entries for this name:
alt mRNA {139aa} PREDICTED: similar to solute carrier family 22, member 24
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.4          2           1
 C cysteine            2.2          3           1
 D aspartate           5.8          8           1
 E glutamate           2.9          4           1
 F phenylalanine       7.2         10           1
 G glycine             6.5          9           2
 H histidine           7.9         11           2
 I isoleucine          9.4         13           3
 K lysine              1.4          2           1
 L leucine            12.9         18           3
 M methionine          2.2          3           1
 N asparagine          5.0          7           1
 P proline             5.0          7           1
 Q glutamine           3.6          5           1
 R arginine            2.9          4           1
 S serine              6.5          9           2
 T threonine           5.8          8           1
 V valine              7.2         10           1
 W tryptophan          2.2          3           1
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343132 
LOC100134162          1.000   PREDICTED: similar to solute carrier family 22, mem...
LOC100287736          1.000   PREDICTED: similar to solute carrier family 22, mem...
SLC22A24              0.640   solute carrier family 22, member 24 
SLC22A25              0.614   putative UST1-like organic anion transporter 
SLC22A10              0.603   solute carrier family 22, member 10 
SLC22A9               0.596   solute carrier family 22 (organic anion/cation trans...
SLC22A12              0.382   urate anion exchanger 1 isoform a 
SLC22A11              0.335   solute carrier family 22 member 11 
SLC22A6               0.224   solute carrier family 22 member 6 isoform d 
SLC22A6               0.224   solute carrier family 22 member 6 isoform c 
SLC22A6               0.224   solute carrier family 22 member 6 isoform b 
SLC22A6               0.224   solute carrier family 22 member 6 isoform a 
SLC22A20              0.221   solute carrier family 22, member 20 
SLC22A8               0.140   solute carrier family 22 member 8 
SLC22A7               0.118   solute carrier family 22 member 7 isoform b 
SLC22A7               0.118   solute carrier family 22 member 7 isoform a 
SLC22A13              0.088   solute carrier family 22 (organic anion transporter...
SLC22A16              0.044   solute carrier family 22, member 16 
SLC22A5               0.007   solute carrier family 22 member 5 
SLC22A4               0.007   solute carrier family 22 member 4 
LOC100293446          0.007   PREDICTED: similar to PL-5283 protein 
MARCH9                0.007   membrane-associated RING-CH protein IX 
KCNJ6                 0.004   potassium inwardly-rectifying channel J6 
MPDU1                 0.004   mannose-P-dolichol utilization defect 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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