Guide to the Human Genome
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Name: MPDU1 Sequence: fasta or formatted (247aa) NCBI GI: 116517313
Description:

mannose-P-dolichol utilization defect 1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         21           2
 C cysteine            2.0          5           1
 D aspartate           1.6          4           1
 E glutamate           2.4          6           1
 F phenylalanine       4.9         12           1
 G glycine             8.1         20           2
 H histidine           2.0          5           1
 I isoleucine          4.5         11           1
 K lysine              4.9         12           2
 L leucine            19.0         47           2
 M methionine          2.4          6           1
 N asparagine          2.8          7           2
 P proline             4.9         12           2
 Q glutamine           5.3         13           1
 R arginine            1.6          4           1
 S serine              6.1         15           2
 T threonine           6.1         15           1
 V valine              9.3         23           3
 W tryptophan          1.2          3           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mannose-P-dolichol utilization defect 1 
PQLC3                 0.067   PQ loop repeat containing 3 
OR6K6                 0.017   olfactory receptor, family 6, subfamily K, member 6 ...
LOC100294001          0.015   PREDICTED: hypothetical protein 
LOC100290969          0.015   PREDICTED: hypothetical protein XP_002347122 
LOC100289446          0.015   PREDICTED: hypothetical protein XP_002344250 
NIPAL3                0.011   NIPA-like domain containing 3 
HEMK1                 0.009   HemK methyltransferase family member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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