Guide to the Human Genome
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Name: LOC100293446 Sequence: fasta or formatted (63aa) NCBI GI: 239754795
Description:

PREDICTED: similar to PL-5283 protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9          5           1
 C cysteine            3.2          2           2
 D aspartate           4.8          3           1
 E glutamate           4.8          3           1
 F phenylalanine       7.9          5           1
 G glycine             4.8          3           1
 H histidine           1.6          1           1
 I isoleucine          6.3          4           1
 K lysine              7.9          5           2
 L leucine             9.5          6           2
 M methionine          1.6          1           1
 N asparagine          4.8          3           1
 P proline             4.8          3           1
 Q glutamine           7.9          5           1
 R arginine            3.2          2           1
 S serine             11.1          7           2
 T threonine           0.0          0           0
 V valine              3.2          2           1
 W tryptophan          1.6          1           1
 Y tyrosine            3.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to PL-5283 protein 
LOC100292395          0.243   PREDICTED: similar to PL-5283 protein 
LOC100290490          0.243   PREDICTED: hypothetical protein XP_002346927 
LOC100289196          0.243   PREDICTED: hypothetical protein XP_002342763 
LOC100289196          0.243   PREDICTED: similar to PL-5283 protein 
LOC100291819          0.224   PREDICTED: similar to PL-5283 protein 
LOC100289832          0.224   PREDICTED: hypothetical protein XP_002346486 
LOC100287425          0.224   PREDICTED: hypothetical protein XP_002342342 
PL-5283               0.224   PL-5283 protein 
LOC100293154          0.056   PREDICTED: similar to PL-5283 protein 
LOC100290840          0.056   PREDICTED: hypothetical protein XP_002346769 
LOC100288556          0.056   PREDICTED: hypothetical protein XP_002342594 
BRMS1L                0.028   breast cancer metastasis-suppressor 1-like 
LOC100134162          0.019   PREDICTED: similar to solute carrier family 22, mem...
LOC100287736          0.019   PREDICTED: similar to solute carrier family 22, mem...
LOC100287736          0.019   PREDICTED: hypothetical protein XP_002343132 
SLC22A9               0.019   solute carrier family 22 (organic anion/cation trans...
IFNA16                0.019   interferon, alpha 16 
DST                   0.009   dystonin isoform 4 
DST                   0.009   dystonin isoform 3 
DST                   0.009   dystonin isoform 2 
DST                   0.009   dystonin isoform 1 
DST                   0.009   dystonin isoform 1eA precursor 
ZNF831                0.009   zinc finger protein 831 
C9orf91               0.009   hypothetical protein LOC203197 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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