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Search of human proteins with 239744307
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
(486 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 1006 0.0
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 999 0.0
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 994 0.0
gi|4504425 high-mobility group box 1 [Homo sapiens] 322 4e-88
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 310 2e-84
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 268 8e-72
gi|194688135 high-mobility group box 2 [Homo sapiens] 257 1e-68
gi|194688133 high-mobility group box 2 [Homo sapiens] 257 1e-68
gi|11321591 high-mobility group box 2 [Homo sapiens] 257 1e-68
gi|71143137 high-mobility group box 3 [Homo sapiens] 223 4e-58
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 209 3e-54
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 209 3e-54
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 209 5e-54
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 192 7e-49
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 192 7e-49
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 189 6e-48
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 189 6e-48
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 189 6e-48
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 187 2e-47
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 187 2e-47
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 187 2e-47
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 180 3e-45
gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens] 179 4e-45
gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens] 179 4e-45
gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens] 166 3e-41
gi|57232750 HMG2 like isoform 1 [Homo sapiens] 112 8e-25
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 84 2e-16
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 82 1e-15
gi|226246533 TOX high mobility group box family member 3 isoform... 80 3e-15
gi|226054295 TOX high mobility group box family member 3 isoform... 80 3e-15
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 1006 bits (2602), Expect = 0.0
Identities = 486/486 (100%), Positives = 486/486 (100%)
Query: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNEDGFPSMKCSDELSLL 60
MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNEDGFPSMKCSDELSLL
Sbjct: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNEDGFPSMKCSDELSLL 60
Query: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL
Sbjct: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
Query: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN
Sbjct: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
Query: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL
Sbjct: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
Query: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA
Sbjct: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
Query: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDEEDDEDEEDGDDEQSHWQ 360
KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDEEDDEDEEDGDDEQSHWQ
Sbjct: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDEEDDEDEEDGDDEQSHWQ 360
Query: 361 LFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSGL 420
LFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSGL
Sbjct: 361 LFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSGL 420
Query: 421 QLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINYY 480
QLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINYY
Sbjct: 421 QLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINYY 480
Query: 481 FSSLTK 486
FSSLTK
Sbjct: 481 FSSLTK 486
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 999 bits (2583), Expect = 0.0
Identities = 485/487 (99%), Positives = 485/487 (99%), Gaps = 1/487 (0%)
Query: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNEDGFPSMKCSDELSLL 60
MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVN DGFPSMKCSDELSLL
Sbjct: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNGDGFPSMKCSDELSLL 60
Query: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL
Sbjct: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
Query: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN
Sbjct: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
Query: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL
Sbjct: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
Query: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA
Sbjct: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
Query: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKD-EDEDEEDDEDEEDGDDEQSHW 359
KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKD EDEDEEDDEDEEDGDDEQSHW
Sbjct: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEDGDDEQSHW 360
Query: 360 QLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSG 419
QLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSG
Sbjct: 361 QLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLSG 420
Query: 420 LQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINY 479
LQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINY
Sbjct: 421 LQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKINY 480
Query: 480 YFSSLTK 486
YFSSLTK
Sbjct: 481 YFSSLTK 487
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 994 bits (2571), Expect = 0.0
Identities = 485/488 (99%), Positives = 485/488 (99%), Gaps = 2/488 (0%)
Query: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNEDGFPSMKCSDELSLL 60
MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVN DGFPSMKCSDELSLL
Sbjct: 1 MELKLEAEGGEHYDIFLLIYRFCKKWRIYPEKYEDKVVPKANVNGDGFPSMKCSDELSLL 60
Query: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL
Sbjct: 61 FLPTLDATLEPRPNAGCRETPKCLLITQKPLSSFGAYRGDQEGQCPALSKNCQLLLDSSL 120
Query: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN
Sbjct: 121 GCPPGPLEHSQDCWIDHLIPVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKN 180
Query: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL
Sbjct: 181 MSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 240
Query: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA
Sbjct: 241 YFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRA 300
Query: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKD-EDEDEEDDED-EEDGDDEQSH 358
KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKD EDEDEEDDED EEDGDDEQSH
Sbjct: 301 KGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEEDGDDEQSH 360
Query: 359 WQLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLS 418
WQLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLS
Sbjct: 361 WQLFLACCPEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPLGPLLS 420
Query: 419 GLQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKIN 478
GLQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKIN
Sbjct: 421 GLQLAFRVLAVTLASGLSPDGLFFRRLPPYNRVDTSFQKYLFAYLQGRRGGNKVIEDKIN 480
Query: 479 YYFSSLTK 486
YYFSSLTK
Sbjct: 481 YYFSSLTK 488
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 322 bits (826), Expect = 4e-88
Identities = 161/188 (85%), Positives = 170/188 (90%), Gaps = 8/188 (4%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SVNFSEFSKKCSERWK MSAKEKGKF EDMAKADKA Y+REMKTYIPPKGETKK
Sbjct: 35 SVNFSEFSKKCSERWKTMSAKEKGKF-------EDMAKADKARYEREMKTYIPPKGETKK 87
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
KFKDPNAPKRPPSAFFL+ SEY PKIKGE PGLS GDVAKKLGEMWNNTAADDKQPYEK+
Sbjct: 88 KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKK 147
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKD-EDED 342
+AKLKEKYEKDIAAYRAKGK DAA GVVKA KSKKKKEEEE+EEDEEDEEEE+D EDED
Sbjct: 148 AAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDED 207
Query: 343 EEDDEDEE 350
EE+D+D+E
Sbjct: 208 EEEDDDDE 215
Score = 61.2 bits (147), Expect = 2e-09
Identities = 55/212 (25%), Positives = 82/212 (38%), Gaps = 84/212 (39%)
Query: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DP P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
K +YE+++ Y + KG+H + G
Sbjct: 65 KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 124
Query: 312 V---------------------KAAKSKKK---------------------------KEE 323
V KAAK K+K K++
Sbjct: 125 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 184
Query: 324 EENEEDEEDEEEEKDEDEDEEDDEDEEDGDDE 355
+E EEDEEDEE+E +E+EDEED+++EED DDE
Sbjct: 185 KEEEEDEEDEEDE-EEEEDEEDEDEEEDDDDE 215
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 310 bits (794), Expect = 2e-84
Identities = 152/184 (82%), Positives = 164/184 (89%), Gaps = 7/184 (3%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SVNFSEFS KCSERWK MSAKEKGKF EDMAKADK HY+R+MKTYIPPKGETKK
Sbjct: 35 SVNFSEFSNKCSERWKTMSAKEKGKF-------EDMAKADKTHYERQMKTYIPPKGETKK 87
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
KFKDPNAPKRPPSAFFL+ SEY PKIKGE PGLS GDVAKKLGEMWNNTAADDKQP EK+
Sbjct: 88 KFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKK 147
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDE 343
+AKLKEKYEKDIAAY+AKGK +AA GVVKA KSKKKKEEEE+EEDEEDEEEE +EDE++
Sbjct: 148 AAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEDEEDEED 207
Query: 344 EDDE 347
+DDE
Sbjct: 208 DDDE 211
Score = 58.2 bits (139), Expect = 2e-08
Identities = 52/207 (25%), Positives = 75/207 (36%), Gaps = 78/207 (37%)
Query: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DP P+ S AFF+ K K ++F + + K E W +A +K +E +
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64
Query: 285 AKLKEKYEKDIAAY---------------------------------RAKGKH------- 304
K YE+ + Y + KG+H
Sbjct: 65 KADKTHYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGD 124
Query: 305 --------------DAANNGVVKAAKSKKK----------------------KEEEENEE 328
D G KAAK K+K K E+ ++
Sbjct: 125 VAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKK 184
Query: 329 DEEDEEEEKDEDEDEEDDEDEEDGDDE 355
EE+E+EE +EDE+EED+EDEED DDE
Sbjct: 185 KEEEEDEEDEEDEEEEDEEDEEDDDDE 211
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 268 bits (685), Expect = 8e-72
Identities = 134/178 (75%), Positives = 148/178 (83%), Gaps = 7/178 (3%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SV FSEF KKCSE WK + AKEKGKF EDMAKADKAHY+REMKTYIPPKGE KK
Sbjct: 709 SVKFSEFLKKCSETWKTIFAKEKGKF-------EDMAKADKAHYEREMKTYIPPKGEKKK 761
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
KFKDPNAPKRPP AFFL+ SEY PKIKGE PGLS DV KKL MWNNTAA DKQ YEK+
Sbjct: 762 KFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKK 821
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDE 341
+AKLKEKY+KDIAAYRAKGK ++A VVKA KSKKKKEEEE+EEDE++EE E+D+D+
Sbjct: 822 AAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENEEDDDK 879
Score = 35.0 bits (79), Expect = 0.15
Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 71/177 (40%)
Query: 248 KIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAY--------- 298
K K + F + KK E W A +K +E + K YE+++ Y
Sbjct: 702 KKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKKK 761
Query: 299 ------------------------RAKGKHDAA-------------NNGVV--------K 313
+ KG+H NN K
Sbjct: 762 KFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKK 821
Query: 314 AAKSKKK-----------------KEEEENEEDEEDEEEEKDEDEDEEDDEDEEDGD 353
AAK K+K K+ E + ++EE++++EDE+++E+EED D
Sbjct: 822 AAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENEEDDD 878
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 257 bits (657), Expect = 1e-68
Identities = 128/186 (68%), Positives = 147/186 (79%), Gaps = 11/186 (5%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SVNF+EFSKKCSERWK MSAKEK KF EDMAK+DKA Y REMK Y+PPKG+ K
Sbjct: 35 SVNFAEFSKKCSERWKTMSAKEKSKF-------EDMAKSDKARYDREMKNYVPPKGDKKG 87
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
K KDPNAPKRPPSAFFL+ SE+ PKIK E PGLS GD AKKLGEMW+ +A DKQPYE++
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 147
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDE 343
+AKLKEKYEKDIAAYRAKGK +A G + SKKK E EDEE+EEEE+DEDE+E
Sbjct: 148 AAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNE----PEDEEEEEEEEDEDEEE 203
Query: 344 EDDEDE 349
ED+++E
Sbjct: 204 EDEDEE 209
Score = 47.8 bits (112), Expect = 2e-05
Identities = 48/205 (23%), Positives = 75/205 (36%), Gaps = 81/205 (39%)
Query: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DPN P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
K +Y++++ Y + K +H + G
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
Query: 312 V---------------------KAAKSKKKKEEE------------------------EN 326
KAAK K+K E++ +
Sbjct: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
Query: 327 EEDEEDEEEEKDEDED-EEDDEDEE 350
E E++EEEE++EDED EE+DEDEE
Sbjct: 185 NEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 257 bits (657), Expect = 1e-68
Identities = 128/186 (68%), Positives = 147/186 (79%), Gaps = 11/186 (5%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SVNF+EFSKKCSERWK MSAKEK KF EDMAK+DKA Y REMK Y+PPKG+ K
Sbjct: 35 SVNFAEFSKKCSERWKTMSAKEKSKF-------EDMAKSDKARYDREMKNYVPPKGDKKG 87
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
K KDPNAPKRPPSAFFL+ SE+ PKIK E PGLS GD AKKLGEMW+ +A DKQPYE++
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 147
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDE 343
+AKLKEKYEKDIAAYRAKGK +A G + SKKK E EDEE+EEEE+DEDE+E
Sbjct: 148 AAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNE----PEDEEEEEEEEDEDEEE 203
Query: 344 EDDEDE 349
ED+++E
Sbjct: 204 EDEDEE 209
Score = 47.8 bits (112), Expect = 2e-05
Identities = 48/205 (23%), Positives = 75/205 (36%), Gaps = 81/205 (39%)
Query: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DPN P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
K +Y++++ Y + K +H + G
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
Query: 312 V---------------------KAAKSKKKKEEE------------------------EN 326
KAAK K+K E++ +
Sbjct: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
Query: 327 EEDEEDEEEEKDEDED-EEDDEDEE 350
E E++EEEE++EDED EE+DEDEE
Sbjct: 185 NEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 257 bits (657), Expect = 1e-68
Identities = 128/186 (68%), Positives = 147/186 (79%), Gaps = 11/186 (5%)
Query: 164 SVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKK 223
SVNF+EFSKKCSERWK MSAKEK KF EDMAK+DKA Y REMK Y+PPKG+ K
Sbjct: 35 SVNFAEFSKKCSERWKTMSAKEKSKF-------EDMAKSDKARYDREMKNYVPPKGDKKG 87
Query: 224 KFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
K KDPNAPKRPPSAFFL+ SE+ PKIK E PGLS GD AKKLGEMW+ +A DKQPYE++
Sbjct: 88 KKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 147
Query: 284 SAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDE 343
+AKLKEKYEKDIAAYRAKGK +A G + SKKK E EDEE+EEEE+DEDE+E
Sbjct: 148 AAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNE----PEDEEEEEEEEDEDEEE 203
Query: 344 EDDEDE 349
ED+++E
Sbjct: 204 EDEDEE 209
Score = 47.8 bits (112), Expect = 2e-05
Identities = 48/205 (23%), Positives = 75/205 (36%), Gaps = 81/205 (39%)
Query: 227 DPNAPKRPPS--AFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DPN P+ S AFF+ K K ++F + +KK E W +A +K +E +
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 285 AKLKEKYEKDIAAY---------------------------------RAKGKHDAANNGV 311
K +Y++++ Y + K +H + G
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGD 124
Query: 312 V---------------------KAAKSKKKKEEE------------------------EN 326
KAAK K+K E++ +
Sbjct: 125 TAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKK 184
Query: 327 EEDEEDEEEEKDEDED-EEDDEDEE 350
E E++EEEE++EDED EE+DEDEE
Sbjct: 185 NEPEDEEEEEEEEDEDEEEEDEDEE 209
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 223 bits (567), Expect = 4e-58
Identities = 113/177 (63%), Positives = 132/177 (74%), Gaps = 10/177 (5%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF+EFSKKCSERWK MS KEK KF ++MAKADK Y REMK Y P KG K
Sbjct: 34 VPVNFAEFSKKCSERWKTMSGKEKSKF-------DEMAKADKVRYDREMKDYGPAKGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
KK DPNAPKRPPS FFL+ SE+ PKIK PG+S GDVAKKLGEMWNN +KQPY
Sbjct: 87 KK--DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYIT 144
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDE 339
++AKLKEKYEKD+A Y++KGK D A G K A+ K ++E+EE EE+EE+EEEE+DE
Sbjct: 145 KAAKLKEKYEKDVADYKSKGKFDGA-KGPAKVARKKVEEEDEEEEEEEEEEEEEEDE 200
Score = 43.5 bits (101), Expect = 4e-04
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 73/196 (37%)
Query: 227 DPNAPKRPPSA--FFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DP PK SA FF+ K K ++F + +KK E W + +K +++ +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 285 AKLKEKYEKDIAAY-RAKG--------------------------KHDAANNG------- 310
K +Y++++ Y AKG K + N G
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVA 124
Query: 311 ------------------VVKAAKSKKKKEEE-------------------ENEEDEEDE 333
+ KAAK K+K E++ ++ EE++
Sbjct: 125 KKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEED 184
Query: 334 EEEKDEDEDEEDDEDE 349
EEE++E+E+EE++EDE
Sbjct: 185 EEEEEEEEEEEEEEDE 200
Score = 30.8 bits (68), Expect = 2.9
Identities = 17/73 (23%), Positives = 28/73 (38%)
Query: 140 PVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDM 199
P RP S ++ + +KK E W N++ EK + K ++
Sbjct: 93 PKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEK 152
Query: 200 AKADKAHYKREMK 212
+ D A YK + K
Sbjct: 153 YEKDVADYKSKGK 165
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 209 bits (533), Expect = 3e-54
Identities = 109/183 (59%), Positives = 131/183 (71%), Gaps = 14/183 (7%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF+EFSKKCS RWK MS+KEK KFG +MAKAD+ Y REMK Y P KG K
Sbjct: 34 VPVNFAEFSKKCSGRWKTMSSKEKFKFG-------EMAKADEVCYDREMKDYGPAKGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNAPKRPPS FFL+ SE+ PKIK PG+S GDVAKKLGEMWNN +KQPY
Sbjct: 87 K---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDED 342
++AKLKEKYEKD+ + KGK G + AK +KK EEE+EEDEE+EE+EKDE+++
Sbjct: 144 KAAKLKEKYEKDVVDCKLKGKF----YGAKRPAKVARKKVEEEDEEDEEEEEKEKDEEDE 199
Query: 343 EED 345
+ +
Sbjct: 200 QRN 202
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 209 bits (533), Expect = 3e-54
Identities = 109/183 (59%), Positives = 131/183 (71%), Gaps = 14/183 (7%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF+EFSKKCS RWK MS+KEK KFG +MAKAD+ Y REMK Y P KG K
Sbjct: 34 VPVNFAEFSKKCSGRWKTMSSKEKFKFG-------EMAKADEVCYDREMKDYGPAKGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNAPKRPPS FFL+ SE+ PKIK PG+S GDVAKKLGEMWNN +KQPY
Sbjct: 87 K---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDED 342
++AKLKEKYEKD+ + KGK G + AK +KK EEE+EEDEE+EE+EKDE+++
Sbjct: 144 KAAKLKEKYEKDVVDCKLKGKF----YGAKRPAKVARKKVEEEDEEDEEEEEKEKDEEDE 199
Query: 343 EED 345
+ +
Sbjct: 200 QRN 202
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 209 bits (532), Expect = 5e-54
Identities = 109/183 (59%), Positives = 131/183 (71%), Gaps = 14/183 (7%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF+EFSKKCS RWK MS+KEK KFG +MAKAD+ Y REMK Y P KG K
Sbjct: 34 VLVNFAEFSKKCSGRWKTMSSKEKFKFG-------EMAKADEVCYDREMKDYGPAKGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNAPKRPPS FFL+ SE+ PKIK PG+S GDVAKKLGEMWNN +KQPY
Sbjct: 87 K---DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDED 342
++AKLKEKYEKD+ + KGK G + AK +KK EEE+EEDEE+EE+EKDE+++
Sbjct: 144 KAAKLKEKYEKDVVDCKLKGKF----YGAKRPAKVARKKVEEEDEEDEEEEEKEKDEEDE 199
Query: 343 EED 345
+ +
Sbjct: 200 QRN 202
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 192 bits (487), Expect = 7e-49
Identities = 98/169 (57%), Positives = 118/169 (69%), Gaps = 14/169 (8%)
Query: 162 RVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGET 221
+V +NF+EFSKKCSERWK MS KEK KF ++AKADK HY +E+K Y P KG
Sbjct: 33 KVPINFAEFSKKCSERWKTMSKKEKSKFN-------ELAKADKVHYDQEIKDYGPAKGGK 85
Query: 222 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYE 281
KK DPNAPKRPPS FFL+ SE+ PK K PG+ GDVAKKLGEMW N +KQPY
Sbjct: 86 KK---DPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYI 142
Query: 282 KRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDE 330
++AKLKEKYEKD+A Y++KGK D A AK +KK EEE+E++E
Sbjct: 143 TQAAKLKEKYEKDVAVYKSKGKSDGAKG----PAKVAQKKVEEEDEDEE 187
Score = 35.4 bits (80), Expect = 0.12
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 227 DPNAPKRPPSA--FFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DP PK SA FF+ K K + ++F + +KK E W + +K + + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 285 AKLKEKYEKDIAAY-RAKG 302
K Y+++I Y AKG
Sbjct: 65 KADKVHYDQEIKDYGPAKG 83
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 192 bits (487), Expect = 7e-49
Identities = 98/169 (57%), Positives = 118/169 (69%), Gaps = 14/169 (8%)
Query: 162 RVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGET 221
+V +NF+EFSKKCSERWK MS KEK KF ++AKADK HY +E+K Y P KG
Sbjct: 33 KVPINFAEFSKKCSERWKTMSKKEKSKFN-------ELAKADKVHYDQEIKDYGPAKGGK 85
Query: 222 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYE 281
KK DPNAPKRPPS FFL+ SE+ PK K PG+ GDVAKKLGEMW N +KQPY
Sbjct: 86 KK---DPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYI 142
Query: 282 KRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDE 330
++AKLKEKYEKD+A Y++KGK D A AK +KK EEE+E++E
Sbjct: 143 TQAAKLKEKYEKDVAVYKSKGKSDGAKG----PAKVAQKKVEEEDEDEE 187
Score = 35.4 bits (80), Expect = 0.12
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 227 DPNAPKRPPSA--FFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRS 284
DP PK SA FF+ K K + ++F + +KK E W + +K + + +
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 285 AKLKEKYEKDIAAY-RAKG 302
K Y+++I Y AKG
Sbjct: 65 KADKVHYDQEIKDYGPAKG 83
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 189 bits (479), Expect = 6e-48
Identities = 101/179 (56%), Positives = 127/179 (70%), Gaps = 11/179 (6%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF EFSKKCSE+ K MS KEK KF ++MAK DK HY +EMK P +G K
Sbjct: 34 VPVNFVEFSKKCSEKRKTMSGKEKTKF-------DEMAKVDKVHYDQEMKDNGPVEGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNA KRP S FFL+ SE+ PKIK PG+S GD+AKKLGEMW N + +KQPY
Sbjct: 87 K---DPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYIT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDE 341
++A LKEKYEKD+A Y++KGK D+A G K A K K++++E+EE+EE+EEE+K+E E
Sbjct: 144 KAADLKEKYEKDVADYKSKGKFDSA-KGPTKIAWKKVKEKDKEDEEEEEEEEEKKEEGE 201
>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 189 bits (479), Expect = 6e-48
Identities = 101/179 (56%), Positives = 127/179 (70%), Gaps = 11/179 (6%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF EFSKKCSE+ K MS KEK KF ++MAK DK HY +EMK P +G K
Sbjct: 34 VPVNFVEFSKKCSEKRKTMSGKEKTKF-------DEMAKVDKVHYDQEMKDNGPVEGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNA KRP S FFL+ SE+ PKIK PG+S GD+AKKLGEMW N + +KQPY
Sbjct: 87 K---DPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYIT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDE 341
++A LKEKYEKD+A Y++KGK D+A G K A K K++++E+EE+EE+EEE+K+E E
Sbjct: 144 KAADLKEKYEKDVADYKSKGKFDSA-KGPTKIAWKKVKEKDKEDEEEEEEEEEKKEEGE 201
>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
sapiens]
Length = 201
Score = 189 bits (479), Expect = 6e-48
Identities = 101/179 (56%), Positives = 127/179 (70%), Gaps = 11/179 (6%)
Query: 163 VSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETK 222
V VNF EFSKKCSE+ K MS KEK KF ++MAK DK HY +EMK P +G K
Sbjct: 34 VPVNFVEFSKKCSEKRKTMSGKEKTKF-------DEMAKVDKVHYDQEMKDNGPVEGGKK 86
Query: 223 KKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEK 282
K DPNA KRP S FFL+ SE+ PKIK PG+S GD+AKKLGEMW N + +KQPY
Sbjct: 87 K---DPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYIT 143
Query: 283 RSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDE 341
++A LKEKYEKD+A Y++KGK D+A G K A K K++++E+EE+EE+EEE+K+E E
Sbjct: 144 KAADLKEKYEKDVADYKSKGKFDSA-KGPTKIAWKKVKEKDKEDEEEEEEEEEKKEEGE 201
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 187 bits (474), Expect = 2e-47
Identities = 102/172 (59%), Positives = 119/172 (69%), Gaps = 15/172 (8%)
Query: 160 KVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKG 219
K + VNF+EFSKKCSERWK MS KEK KF ++MAK DK H REMK P KG
Sbjct: 28 KKKNPVNFAEFSKKCSERWKTMSGKEKSKF-------DEMAKTDKVHCDREMKG--PAKG 78
Query: 220 ETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQP 279
KKK DP+APKRPPS FFL+ SE PKIK PG+S GDVAKKLGEMWNN +KQP
Sbjct: 79 GKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 136
Query: 280 YEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEE 331
Y ++AKLKEKYEKD+A ++KGK D G + AK KK EEE+E++EE
Sbjct: 137 YITKTAKLKEKYEKDVADSKSKGKFD----GSKRPAKVAWKKVEEEDEDEEE 184
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 187 bits (474), Expect = 2e-47
Identities = 102/172 (59%), Positives = 119/172 (69%), Gaps = 15/172 (8%)
Query: 160 KVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKG 219
K + VNF+EFSKKCSERWK MS KEK KF ++MAK DK H REMK P KG
Sbjct: 28 KKKNPVNFAEFSKKCSERWKTMSGKEKSKF-------DEMAKTDKVHCDREMKG--PAKG 78
Query: 220 ETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQP 279
KKK DP+APKRPPS FFL+ SE PKIK PG+S GDVAKKLGEMWNN +KQP
Sbjct: 79 GKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 136
Query: 280 YEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEE 331
Y ++AKLKEKYEKD+A ++KGK D G + AK KK EEE+E++EE
Sbjct: 137 YITKTAKLKEKYEKDVADSKSKGKFD----GSKRPAKVAWKKVEEEDEDEEE 184
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 187 bits (474), Expect = 2e-47
Identities = 102/172 (59%), Positives = 119/172 (69%), Gaps = 15/172 (8%)
Query: 160 KVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKG 219
K + VNF+EFSKKCSERWK MS KEK KF ++MAK DK H REMK P KG
Sbjct: 28 KKKNPVNFAEFSKKCSERWKTMSGKEKSKF-------DEMAKTDKVHCDREMKG--PAKG 78
Query: 220 ETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQP 279
KKK DP+APKRPPS FFL+ SE PKIK PG+S GDVAKKLGEMWNN +KQP
Sbjct: 79 GKKKK--DPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 136
Query: 280 YEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEE 331
Y ++AKLKEKYEKD+A ++KGK D G + AK KK EEE+E++EE
Sbjct: 137 YITKTAKLKEKYEKDVADSKSKGKFD----GSKRPAKVAWKKVEEEDEDEEE 184
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 180 bits (456), Expect = 3e-45
Identities = 98/163 (60%), Positives = 113/163 (69%), Gaps = 15/163 (9%)
Query: 169 EFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDP 228
EFSKKCSERWK MS KEK KF ++MAK DK H REMK P KG KKK DP
Sbjct: 19 EFSKKCSERWKTMSGKEKSKF-------DEMAKTDKVHCDREMKG--PAKGGKKKK--DP 67
Query: 229 NAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLK 288
+APKRPPS FFL+ SE PKIK PG+S GDVAKKLGEMWNN +KQPY ++AKLK
Sbjct: 68 SAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKTAKLK 127
Query: 289 EKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEE 331
EKYEKD+A ++KGK D G + AK KK EEE+E++EE
Sbjct: 128 EKYEKDVADSKSKGKFD----GSKRPAKVAWKKVEEEDEDEEE 166
>gi|239752318 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 179 bits (455), Expect = 4e-45
Identities = 88/125 (70%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 201 KADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGD 260
K D AHY+REMK YIPPK ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS D
Sbjct: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
Query: 261 VAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKK 320
VAKKLGEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKK
Sbjct: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
Query: 321 KEEEE 325
KEE++
Sbjct: 153 KEEDK 157
>gi|239746826 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 214
Score = 179 bits (455), Expect = 4e-45
Identities = 88/125 (70%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 201 KADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGD 260
K D AHY+REMK YIPPK ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS D
Sbjct: 34 KVDMAHYEREMKIYIPPKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISD 92
Query: 261 VAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKK 320
VAKKLGEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKK
Sbjct: 93 VAKKLGEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKK 152
Query: 321 KEEEE 325
KEE++
Sbjct: 153 KEEDK 157
>gi|239757817 PREDICTED: similar to hCG1647425 [Homo sapiens]
Length = 227
Score = 166 bits (421), Expect = 3e-41
Identities = 95/180 (52%), Positives = 113/180 (62%), Gaps = 24/180 (13%)
Query: 146 SHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKA 205
SHCSTLSSIETAPG+VR + S K S+ + M ++
Sbjct: 29 SHCSTLSSIETAPGQVRAKQALGD-----SALLKKKSSTQ-------------MLQSTSQ 70
Query: 206 HYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKL 265
+ R + + ETK KF+DPNAPK PP AFF++ SE PKIK E PGLS DVAKKL
Sbjct: 71 SFLRSAQ-----RAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKL 124
Query: 266 GEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEE 325
GEMWN A DDK PYEK++ KLKEKYEKDIAA+ KGK DAA G +KA K KKKKEE++
Sbjct: 125 GEMWNYIAEDDKHPYEKKAVKLKEKYEKDIAAFGGKGKPDAAKKGAIKAEKCKKKKEEDK 184
>gi|57232750 HMG2 like isoform 1 [Homo sapiens]
Length = 186
Score = 112 bits (280), Expect = 8e-25
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 11/136 (8%)
Query: 165 VNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKK 224
V F EFS+KCSE+W+++S EK K+ E +AK DKA Y+ EM Y+ G+ KK+
Sbjct: 36 VGFKEFSRKCSEKWRSISKHEKAKY-------EALAKLDKARYQEEMMNYV---GKRKKR 85
Query: 225 FK-DPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKR 283
K DP P+RPPS+F L+ ++ ++K E P S VAK G+MW+ +K PYE+R
Sbjct: 86 RKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQR 145
Query: 284 SAKLKEKYEKDIAAYR 299
A L+ KY +++ YR
Sbjct: 146 VALLRAKYFEELELYR 161
Score = 36.6 bits (83), Expect = 0.053
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 231 PKRPPSAFFLYFSEYGPKIKGERPG--LSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLK 288
PK S++ + Y K K ++P + F + ++K E W + + +K YE + K
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 289 EKYEKDIAAYRAKGK 303
+Y++++ Y K K
Sbjct: 69 ARYQEEMMNYVGKRK 83
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 84.3 bits (207), Expect = 2e-16
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 6/176 (3%)
Query: 182 SAKEKGKFGRARGKFEDMAKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLY 241
S+ +G R K + + KA A ++ K K KK KDPNAPKRP SA+ L+
Sbjct: 503 SSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKKGKDPNAPKRPMSAYMLW 557
Query: 242 FSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAK 301
+ KIK + PG+S D++KK GE+W + + K+ +++++ + YEK + Y
Sbjct: 558 LNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG- 616
Query: 302 GKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDEEDDEDEEDGDDEQS 357
G+ +++ K K K K E+++ + E E DE S
Sbjct: 617 GRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESS 672
Score = 41.6 bits (96), Expect = 0.002
Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 45/208 (21%)
Query: 140 PVRPGKSHCSTLSSIETAPGKVRVSVNFSEFSKKCSERWKNMSAKEKGKFGRARGKFEDM 199
P RP ++ L++ ++ ++ SKK E WK MS ++K ++ R K ED
Sbjct: 547 PKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDR---KAED- 602
Query: 200 AKADKAHYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFG 259
A+ D Y++ MK Y +GE+ K+ K K K+K E+
Sbjct: 603 ARRD---YEKAMKEYEGGRGESSKRDKSKKKKK--------------VKVKMEK------ 639
Query: 260 DVAKKLGEMWNNTAADDKQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKK 319
K +++ + +Q E S K KE D +++G K+ KK
Sbjct: 640 ---KSTPSRGSSSKSSSRQLSE--SFKSKEFVSS-----------DESSSGENKS--KKK 681
Query: 320 KKEEEENEEDEEDEEEEKDEDEDEEDDE 347
++ E++EE+E ED DE
Sbjct: 682 RRRSEDSEEEELASTPPSSEDSASGSDE 709
Score = 32.3 bits (72), Expect = 0.99
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 23/167 (13%)
Query: 249 IKGERPGLSFGDVAKKLGEMWNNTAADDKQP-YEKRSAKLKEKYEKDIAAYRAKGKHDAA 307
I+ E G F V K + N + P Y++ + +++++ + + +GK
Sbjct: 406 IEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREE 465
Query: 308 NNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEDEDEEDDEDEEDGD-DEQSHWQLFLACC 366
N ++ E E+EED EE D + +E D D DE+ QL A
Sbjct: 466 NANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKM 525
Query: 367 PEDQRRLVPQCPANARAIACKTPVSFPPLSFLSAKEGSDLNAVGRPL 413
+D++ + K PV K+G D NA RP+
Sbjct: 526 AKDRK-------------SRKKPV--------EVKKGKDPNAPKRPM 551
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 82.0 bits (201), Expect = 1e-15
Identities = 37/84 (44%), Positives = 55/84 (65%)
Query: 217 PKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADD 276
PK KKK KDPN P++P SA+ L+F + IKG+ P +FG+V+K + MW+ +
Sbjct: 247 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQ 306
Query: 277 KQPYEKRSAKLKEKYEKDIAAYRA 300
KQ Y+K++ K++Y K +AAYRA
Sbjct: 307 KQVYKKKTEAAKKEYLKQLAAYRA 330
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 80.5 bits (197), Expect = 3e-15
Identities = 36/84 (42%), Positives = 56/84 (66%)
Query: 217 PKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADD 276
PK KKK KDPN P++P SA+ L+F + IKG+ P +FG+V+K + MW++ +
Sbjct: 236 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQ 295
Query: 277 KQPYEKRSAKLKEKYEKDIAAYRA 300
KQ Y++++ K++Y K +AAYRA
Sbjct: 296 KQVYKRKTEAAKKEYLKALAAYRA 319
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 80.5 bits (197), Expect = 3e-15
Identities = 36/84 (42%), Positives = 56/84 (66%)
Query: 217 PKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADD 276
PK KKK KDPN P++P SA+ L+F + IKG+ P +FG+V+K + MW++ +
Sbjct: 241 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQ 300
Query: 277 KQPYEKRSAKLKEKYEKDIAAYRA 300
KQ Y++++ K++Y K +AAYRA
Sbjct: 301 KQVYKRKTEAAKKEYLKALAAYRA 324
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,659,212
Number of Sequences: 37866
Number of extensions: 1265150
Number of successful extensions: 47487
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 307
Number of HSP's that attempted gapping in prelim test: 13498
Number of HSP's gapped (non-prelim): 14526
length of query: 486
length of database: 18,247,518
effective HSP length: 106
effective length of query: 380
effective length of database: 14,233,722
effective search space: 5408814360
effective search space used: 5408814360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.