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Search of human proteins with 239744269
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744269 PREDICTED: hypothetical protein XP_002343109 [Homo
sapiens]
(445 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755464 PREDICTED: similar to hCG2045708 [Homo sapiens] 904 0.0
gi|239749955 PREDICTED: similar to hCG2045708 [Homo sapiens] 904 0.0
gi|239744269 PREDICTED: hypothetical protein XP_002343109 [Homo ... 904 0.0
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 47 5e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 47 5e-05
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 45 2e-04
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 44 3e-04
gi|18959210 WIRE protein [Homo sapiens] 44 3e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 43 5e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 43 7e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 43 7e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 43 7e-04
gi|210032580 SET domain containing 1B [Homo sapiens] 42 9e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 42 9e-04
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 42 9e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 42 0.001
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 42 0.001
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 42 0.001
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 41 0.002
gi|18079216 CASK interacting protein 1 [Homo sapiens] 41 0.003
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 41 0.003
gi|146134388 YLP motif containing 1 [Homo sapiens] 41 0.003
gi|153792074 proline rich 12 [Homo sapiens] 41 0.003
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 40 0.003
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 40 0.003
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 40 0.004
gi|197245373 proline rich 22 isoform 1 [Homo sapiens] 40 0.006
gi|23503299 proline rich 22 isoform 2 [Homo sapiens] 40 0.006
gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo s... 39 0.007
gi|239756197 PREDICTED: hypothetical protein [Homo sapiens] 39 0.007
>gi|239755464 PREDICTED: similar to hCG2045708 [Homo sapiens]
Length = 445
Score = 904 bits (2336), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60
MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD
Sbjct: 1 MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60
Query: 61 CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS
Sbjct: 61 CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
Query: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180
PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK
Sbjct: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180
Query: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240
VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE
Sbjct: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240
Query: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300
GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV
Sbjct: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300
Query: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360
TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS
Sbjct: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360
Query: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420
TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR
Sbjct: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420
Query: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445
ASGRRLEGCMAAAAGSERVAEAVRL
Sbjct: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445
>gi|239749955 PREDICTED: similar to hCG2045708 [Homo sapiens]
Length = 445
Score = 904 bits (2336), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60
MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD
Sbjct: 1 MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60
Query: 61 CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS
Sbjct: 61 CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
Query: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180
PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK
Sbjct: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180
Query: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240
VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE
Sbjct: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240
Query: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300
GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV
Sbjct: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300
Query: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360
TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS
Sbjct: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360
Query: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420
TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR
Sbjct: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420
Query: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445
ASGRRLEGCMAAAAGSERVAEAVRL
Sbjct: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445
>gi|239744269 PREDICTED: hypothetical protein XP_002343109 [Homo
sapiens]
Length = 445
Score = 904 bits (2336), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60
MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD
Sbjct: 1 MRSLLLVSLGTLAMLSLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGAD 60
Query: 61 CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS
Sbjct: 61 CSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
Query: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180
PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK
Sbjct: 121 PKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK 180
Query: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240
VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE
Sbjct: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVE 240
Query: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300
GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV
Sbjct: 241 GEDVLVHQLLLHQVVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPV 300
Query: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360
TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS
Sbjct: 301 TLRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAGDRFLS 360
Query: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420
TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR
Sbjct: 361 TSGMGPSVTAGTAWEYFETGPLAIRSSTEPPTSDMVRRMDVNLCSGILTSAEAGAASRQR 420
Query: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445
ASGRRLEGCMAAAAGSERVAEAVRL
Sbjct: 421 ASGRRLEGCMAAAAGSERVAEAVRL 445
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 46.6 bits (109), Expect = 5e-05
Identities = 70/252 (27%), Positives = 85/252 (33%), Gaps = 47/252 (18%)
Query: 11 TLAMLSLEPTGPHPQASSGLILNGPGTLNRTGV------LQGLRTPPP------------ 52
+L L P P QA++ L G TL T L L TPPP
Sbjct: 350 SLQTLPSPPATPPSQATTSL---GSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQ 406
Query: 53 --PTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDV 110
P+ P S + P LA + + FS + A P ++ S
Sbjct: 407 APPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSP-PASPPVSPSAT 465
Query: 111 PFPRSPDHGSPKLEQR-LQSCSQRGAGDPYAPKVTSPG-IPGPLGTMTLSTISNPGTRTT 168
P P P L LQ A P +P T P P PL L P
Sbjct: 466 P----PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPP----- 516
Query: 169 CAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFS---VLPLTPLQKGGQPPPPGCPEVRA 225
+ PA P A P P P PGQ FS LP++PL PPP P V A
Sbjct: 517 ----PQAPPALATPPLQALPSP-PASFPGQAPFSPSASLPMSPL----ATPPPQAPPVLA 567
Query: 226 TRSEREPTRPPA 237
+ P PPA
Sbjct: 568 APLLQVPPSPPA 579
Score = 35.4 bits (80), Expect = 0.11
Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 138 PYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVP-GPTAWPEPLPLGDP 196
P++P SP + P +S T + A P +VP P A P P P
Sbjct: 439 PFSPP-PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP 497
Query: 197 GQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGE 242
A L PLQ PPP P AT + PPA G+
Sbjct: 498 PPQAPPPLAAPPLQLA--KPPPQAPPALATPPLQALPSPPASFPGQ 541
Score = 31.2 bits (69), Expect = 2.0
Identities = 54/200 (27%), Positives = 69/200 (34%), Gaps = 24/200 (12%)
Query: 44 LQGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKR 103
LQ LR PP T PR + + + P S S+ P
Sbjct: 277 LQALR-PPQVTPPRKDAAPALGPLS-------SSPLATPSPSAALQSQAPPTLPATPHSS 328
Query: 104 KLT-ESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISN 162
LT + P P +P SP LQ+ A P + TS G P T S + +
Sbjct: 329 SLTCQLATPLPLAPP--SPSAPPSLQTLPSPPATPP-SQATTSLG--SPTLQATHSFLPS 383
Query: 163 PGTRTTCAHHQEGGPAAKVP------GPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPP 216
P + PA +P P A P PL P A + L + LQ PP
Sbjct: 384 PPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPP 443
Query: 217 PPGCPEVRATRSEREPTRPP 236
P P V+A S P PP
Sbjct: 444 P--SPPVQAPFS--PPASPP 459
Score = 29.6 bits (65), Expect = 5.8
Identities = 48/195 (24%), Positives = 65/195 (33%), Gaps = 16/195 (8%)
Query: 46 GLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKL 105
GL TP PP PR + ++V +G AG + ++ +G A +
Sbjct: 23 GLLTPRPPGSPRPPPPVTPAALRV---LGAAGAVGRKPLAERAGGIGGATIPESAPRAGP 79
Query: 106 TESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPG---IPG-PLGTMTLSTIS 161
T S R+P P S RG P A K TSPG PG GT +
Sbjct: 80 TRSAGTSSRNPASRPP--------ASGRGERAPPA-KNTSPGPVSSPGRASGTTRPGPLG 130
Query: 162 NPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
G R + G A + P +A G T + P + G P
Sbjct: 131 QKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLP 190
Query: 222 EVRATRSEREPTRPP 236
+ R PT P
Sbjct: 191 RPAPSARPRPPTEGP 205
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 46.6 bits (109), Expect = 5e-05
Identities = 70/252 (27%), Positives = 85/252 (33%), Gaps = 47/252 (18%)
Query: 11 TLAMLSLEPTGPHPQASSGLILNGPGTLNRTGV------LQGLRTPPP------------ 52
+L L P P QA++ L G TL T L L TPPP
Sbjct: 311 SLQTLPSPPATPPSQATTSL---GSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQ 367
Query: 53 --PTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDV 110
P+ P S + P LA + + FS + A P ++ S
Sbjct: 368 APPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSP-PASPPVSPSAT 426
Query: 111 PFPRSPDHGSPKLEQR-LQSCSQRGAGDPYAPKVTSPG-IPGPLGTMTLSTISNPGTRTT 168
P P P L LQ A P +P T P P PL L P
Sbjct: 427 P----PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPP----- 477
Query: 169 CAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFS---VLPLTPLQKGGQPPPPGCPEVRA 225
+ PA P A P P P PGQ FS LP++PL PPP P V A
Sbjct: 478 ----PQAPPALATPPLQALPSP-PASFPGQAPFSPSASLPMSPL----ATPPPQAPPVLA 528
Query: 226 TRSEREPTRPPA 237
+ P PPA
Sbjct: 529 APLLQVPPSPPA 540
Score = 35.4 bits (80), Expect = 0.11
Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 138 PYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVP-GPTAWPEPLPLGDP 196
P++P SP + P +S T + A P +VP P A P P P
Sbjct: 400 PFSPP-PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP 458
Query: 197 GQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGE 242
A L PLQ PPP P AT + PPA G+
Sbjct: 459 PPQAPPPLAAPPLQLA--KPPPQAPPALATPPLQALPSPPASFPGQ 502
Score = 32.7 bits (73), Expect = 0.68
Identities = 41/147 (27%), Positives = 53/147 (36%), Gaps = 13/147 (8%)
Query: 96 KEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTM 155
K+ P L+ S + P SP LQ+ A P + TS G P
Sbjct: 281 KDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPP-SQATTSLG--SPTLQA 337
Query: 156 TLSTISNPGTRTTCAHHQEGGPAAKVP------GPTAWPEPLPLGDPGQTAFSVLPLTPL 209
T S + +P + PA +P P A P PL P A + L + L
Sbjct: 338 THSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLL 397
Query: 210 QKGGQPPPPGCPEVRATRSEREPTRPP 236
Q PPP P V+A S P PP
Sbjct: 398 QAPFSPPP--SPPVQAPFS--PPASPP 420
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 44.7 bits (104), Expect = 2e-04
Identities = 70/242 (28%), Positives = 85/242 (35%), Gaps = 63/242 (26%)
Query: 50 PPPPTEPRGADCSHYSLVQVDLPVGLAGDI-------------QEPRFS----------- 85
PPPP P A + L + L L GD QE R S
Sbjct: 260 PPPPPLPGLATSPPFQLTKPGLWSTLHGDAWGPERKGSAPPERQEQRHSLPHPYPYPAPA 319
Query: 86 ---QTSGSRLAADKEVCPEKRKL-TESDVPFPRSPDHGSPKLEQRLQ--------SCSQR 133
G RL P R ES P + GS E R+Q S +
Sbjct: 320 YTAHPPGHRLVPAAPPGPGPRPPGAESHGCLPATRPPGSDLRESRVQRSRMDSSVSPAAT 379
Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTT--------CAHHQEGGPAAKVP--- 182
A PYAP PG+PG + + S+ SN G R H+Q PA +V
Sbjct: 380 TACVPYAPS-RPPGLPGTTTSSSSSSSSNTGLRGVEPNPGIPGADHYQT--PALEVSHHG 436
Query: 183 --GPTAWPEPLP-LGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQV 239
GP+A P LG P T LP P PPPP CP + P PPA +
Sbjct: 437 RLGPSAHSSRKPFLGAPAATPHLSLPPGP----SSPPPPPCPRL------LRPPPPPAWL 486
Query: 240 EG 241
+G
Sbjct: 487 KG 488
Score = 33.5 bits (75), Expect = 0.40
Identities = 58/230 (25%), Positives = 77/230 (33%), Gaps = 47/230 (20%)
Query: 21 GPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQ 80
GP +S L P + G +PPPP PR L++ P
Sbjct: 439 GPSAHSSRKPFLGAPAATPHLSLPPGPSSPPPPPCPR--------LLRPPPP-------- 482
Query: 81 EPRFSQTSGSRLAA-DKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPY 139
P + + R A D E+ E TE P P L R G P
Sbjct: 483 -PAWLKGPACRAAREDGEILEELFFGTEGP------PRPAPPPLPHR------EGFLGPP 529
Query: 140 APKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVP-GPTAWPEPL------- 191
A + + +GT T P T TT + + G + P GP ++P P
Sbjct: 530 ASRFS-------VGTQDSHTPPTPPTPTTSSSNSNSGSHSSSPAGPVSFPPPPYLARSID 582
Query: 192 PLGDPGQTAFSVL--PLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQV 239
PL P A + PL PL P PP + S R P P +V
Sbjct: 583 PLPRPPSPAQNPQDPPLVPLTLALPPAPPSSCHQNTSGSFRRPESPRPRV 632
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 43.9 bits (102), Expect = 3e-04
Identities = 61/216 (28%), Positives = 75/216 (34%), Gaps = 54/216 (25%)
Query: 34 GPGTLNRTGVL-----QGLRTPPP---PTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFS 85
GPG G GL PP P P+G SH + P G G +
Sbjct: 318 GPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSH----GLPGPKGETGPAGPAGYP 373
Query: 86 QTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCS-QRGAGDPYAPKVT 144
G R + + P +P P PK L G G P
Sbjct: 374 GAKGERGSPGSDGKPG----------YPGKPGLDGPKGNPGLPGPKGDPGVGGP------ 417
Query: 145 SPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGP--AAKVPGPTAWPEPLPLGDPGQTAFS 202
PG+PGP+G G + H+ E GP A +PG P+G PG
Sbjct: 418 -PGLPGPVGP--------AGAKGMPGHNGEAGPRGAPGIPGTRG-----PIGPPG----- 458
Query: 203 VLPLTPLQKG--GQPPPPGCPEVRATRSEREPTRPP 236
+P P KG G P PPG P AT+ PT PP
Sbjct: 459 -IPGFPGSKGDPGSPGPPG-PAGIATKGLNGPTGPP 492
Score = 37.0 bits (84), Expect = 0.036
Identities = 38/119 (31%), Positives = 44/119 (36%), Gaps = 35/119 (29%)
Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
P P +GSP L+ PG+PGP G S + PG
Sbjct: 80 PGKPGYGSPGLQGE-------------------PGLPGPPGP---SAVGKPGVPGLPGKP 117
Query: 173 QEGGP--------AAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKG--GQPPPPGCP 221
E GP A +PGP P P G PG SV P P Q+G G P P G P
Sbjct: 118 GERGPYGPKGDVGPAGLPGPRG--PPGPPGIPGPAGISV-PGKPGQQGPTGAPGPRGFP 173
Score = 32.0 bits (71), Expect = 1.2
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 20/95 (21%)
Query: 136 GDPYAPKVTSPGIPGPLGTMTLST---ISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLP 192
GDP SPG PGP G T PG H E G +PGP
Sbjct: 467 GDP-----GSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG----LPGPP------- 510
Query: 193 LGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATR 227
G PG +V+P ++ G +P G P V A +
Sbjct: 511 -GPPGPPGQAVMPEGFIKAGQRPSLSGTPLVSANQ 544
Score = 31.2 bits (69), Expect = 2.0
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 145 SPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVL 204
+PGI GP G PG + E GPA GP A E P G PG+ L
Sbjct: 286 APGIAGPPGPPGFGKPGLPGLKG------ERGPAGLPGGPGAKGEQGPAGLPGKPG---L 336
Query: 205 PLTPLQKGGQPPP--PGCPEVRATRSEREPTRP 235
P G Q P PG + + E P P
Sbjct: 337 TGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGP 369
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 43.9 bits (102), Expect = 3e-04
Identities = 56/229 (24%), Positives = 74/229 (32%), Gaps = 26/229 (11%)
Query: 19 PTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGD 78
P P Q S L+ P T + TG+ PPPP R A+ L
Sbjct: 146 PELPRMQRPSLPDLSRPNTTSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSSKAPAYN- 204
Query: 79 IQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDP 138
+E T G RL +E P P P P P S + P
Sbjct: 205 -REKPLPPTPGQRLHPGREGPP---------APPPVKP---PPSPVNIRTGPSGQSLAPP 251
Query: 139 YAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQ 198
P PG+P + T + R H K PGP P P
Sbjct: 252 PPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHR-------KTPGPVRGLAPPPPTSASP 304
Query: 199 TAFSVLPLTPLQ----KGGQPPPPGCPEVRATRSEREPTRPPAQVEGED 243
+ S P P + +G PPPP P +R + P PP ++ G +
Sbjct: 305 SLLSNRPPPPARDPPSRGAAPPPPP-PVIRNGARDAPPPPPPYRMHGSE 352
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 43.1 bits (100), Expect = 5e-04
Identities = 58/213 (27%), Positives = 72/213 (33%), Gaps = 28/213 (13%)
Query: 46 GLRTPPP---PTEPRGADCSHYSLVQVDLPVGLA-----------GDIQEPRFSQTSGSR 91
GL TPPP PT P S + P G G + P S
Sbjct: 1162 GLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATP--SPKGAPT 1219
Query: 92 LAADKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGP 151
A P+ T S P +P P + + +GA P P T P + G
Sbjct: 1220 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTP--PAATPPSLKGG 1277
Query: 152 LGTMTLSTISNPGTRTTCAHHQEGGPAAK----VPGPTAWPEPLPLGDPGQTAFSVLPLT 207
L T NP T + +GGPA P P A P P G PG P
Sbjct: 1278 LATPPHKGAPNPAVVTPPS--PKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTP 1335
Query: 208 PLQKGGQPPPPGCPEVRAT--RSEREPTRPPAQ 238
P P P G P + AT S+ PT P ++
Sbjct: 1336 PAVT--PPSPKGTPTLPATTPSSKGGPTTPSSK 1366
Score = 39.3 bits (90), Expect = 0.007
Identities = 46/167 (27%), Positives = 55/167 (32%), Gaps = 20/167 (11%)
Query: 80 QEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPD-HGSPKLEQRLQSCSQRGAGDP 138
Q P S TS S P+K + T + P SP G+P + G P
Sbjct: 907 QAPALSMTSSS---------PKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATP 957
Query: 139 ---YAPKVTSPGIPGPLG-TMTLSTISNPGTRTTCAHHQEGGPAAK----VPGPTAWPEP 190
+AP + P P G T S P +GGPA P P A P
Sbjct: 958 SPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPP 1017
Query: 191 LPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPA 237
P G P T F TP PP P + PT P A
Sbjct: 1018 SPKGSPAATPFPKGASTP--PAATPPSPKGSPAATPLPKGAPTTPAA 1062
Score = 35.8 bits (81), Expect = 0.081
Identities = 34/113 (30%), Positives = 39/113 (34%), Gaps = 22/113 (19%)
Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
P SP GSP + S A P +PK + P P G T + P +
Sbjct: 1016 PPSPK-GSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPK------ 1068
Query: 173 QEGGPAAK----VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
GGPA P P A P P G P TP KG PP P
Sbjct: 1069 --GGPATPSLKGAPTPPAATPPSPKGGPA---------TPSPKGAPMPPAATP 1110
Score = 35.0 bits (79), Expect = 0.14
Identities = 41/141 (29%), Positives = 50/141 (35%), Gaps = 26/141 (18%)
Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPY-----APK---VTSP--GIPGPLGTMTLSTISN 162
P P P L+ L + +GA +P +PK TSP G P P S +
Sbjct: 1264 PTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGS 1323
Query: 163 PGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVL----PLTPLQKGGQPPPP 218
PGT P P P A P P G P A + P TP K G PP
Sbjct: 1324 PGTP----------PPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPA 1373
Query: 219 GCPEVRA--TRSEREPTRPPA 237
P + + P R PA
Sbjct: 1374 ATPSHKGGPAMTPPSPKRGPA 1394
Score = 30.0 bits (66), Expect = 4.4
Identities = 37/149 (24%), Positives = 49/149 (32%), Gaps = 27/149 (18%)
Query: 116 PDHGSPKLEQRLQSCSQRGAGDPYAPKVTS--------PGIPGPLGTMTLSTI------- 160
P S K + L + + +P APK + P P P+G TL +
Sbjct: 1456 PATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKE 1515
Query: 161 --SNPGTRT-----TCAHHQEGGPAAKVPG----PTAWPEPLPLGDPGQTAFSVLPLTPL 209
+ P +R T + PA P P A P P P P TP
Sbjct: 1516 VPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPS 1575
Query: 210 QKGGQPPPPGCPEV-RATRSEREPTRPPA 237
K PP P + S +E PPA
Sbjct: 1576 SKEASSPPAVTPSTYKGAPSPKELLIPPA 1604
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 42.7 bits (99), Expect = 7e-04
Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 36/169 (21%)
Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK--VPGPTAWP--- 188
GA P P PG+PGP G + P GGP + V GP P
Sbjct: 1364 GASGPIGPG-GPPGLPGPAGPKGAKGATGP-----------GGPKGEKGVQGPPGHPGPP 1411
Query: 189 ----EPLPLGDPGQTAFSVLPLTPLQK------GGQPPPPGCPE-----VRATRSEREPT 233
+PLP+ P +T SV +Q+ GG P PG E + + R E E
Sbjct: 1412 GEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQM 1471
Query: 234 RPPAQVEGEDVLVHQ--LLLHQVVEDGQHVVDGDAGVGHAQDAIELGCD 280
R P + Q L H + DG++ VD + G A+DA + C+
Sbjct: 1472 RRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGC--ARDAFRVFCN 1518
Score = 33.5 bits (75), Expect = 0.40
Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 136 GDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD 195
GDP P +PG GP G PG R GGP K + P P P G
Sbjct: 881 GDPGPPG--APGKDGPAGLRGF-----PGERGLPG--TAGGPGLKGNEGPSGP-PGPAGS 930
Query: 196 PGQ--TAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRP 235
PG+ A S P+ P + G PPG + E+ P P
Sbjct: 931 PGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 972
Score = 32.7 bits (73), Expect = 0.68
Identities = 35/104 (33%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 133 RGAGDPYAPK--VTSPGIPGPLGTM-TLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWP- 188
RG P PK + G PGP G T T PG + H E GP K PG P
Sbjct: 541 RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGK-PGLPGMPG 599
Query: 189 EPLPLGDPGQTAFSVLPLTPLQKGGQPP-----PPGCPEVRATR 227
P G PG+ P KG Q P P G P R +
Sbjct: 600 SDGPPGHPGKEG------PPGTKGNQGPSGPQGPLGYPGPRGVK 637
Score = 30.0 bits (66), Expect = 4.4
Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 146 PGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL-GDPGQTAFSVL 204
PG PGP G L PGT + GP PG P L G PG+
Sbjct: 859 PGPPGPPGEQGL-----PGTAGKEGTKGDPGP----PGAPGKDGPAGLRGFPGERGLPGT 909
Query: 205 PLTPLQKG-----GQPPPPGCPEVRATRSEREPTRPPAQ 238
P KG G P P G P R P PP +
Sbjct: 910 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 948
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 42.7 bits (99), Expect = 7e-04
Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 36/169 (21%)
Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK--VPGPTAWP--- 188
GA P P PG+PGP G + P GGP + V GP P
Sbjct: 1343 GASGPIGPG-GPPGLPGPAGPKGAKGATGP-----------GGPKGEKGVQGPPGHPGPP 1390
Query: 189 ----EPLPLGDPGQTAFSVLPLTPLQK------GGQPPPPGCPE-----VRATRSEREPT 233
+PLP+ P +T SV +Q+ GG P PG E + + R E E
Sbjct: 1391 GEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQM 1450
Query: 234 RPPAQVEGEDVLVHQ--LLLHQVVEDGQHVVDGDAGVGHAQDAIELGCD 280
R P + Q L H + DG++ VD + G A+DA + C+
Sbjct: 1451 RRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGC--ARDAFRVFCN 1497
Score = 33.5 bits (75), Expect = 0.40
Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 136 GDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD 195
GDP P +PG GP G PG R GGP K + P P P G
Sbjct: 860 GDPGPPG--APGKDGPAGLRGF-----PGERGLPG--TAGGPGLKGNEGPSGP-PGPAGS 909
Query: 196 PGQ--TAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRP 235
PG+ A S P+ P + G PPG + E+ P P
Sbjct: 910 PGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 951
Score = 32.7 bits (73), Expect = 0.68
Identities = 35/104 (33%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 133 RGAGDPYAPK--VTSPGIPGPLGTM-TLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWP- 188
RG P PK + G PGP G T T PG + H E GP K PG P
Sbjct: 520 RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGK-PGLPGMPG 578
Query: 189 EPLPLGDPGQTAFSVLPLTPLQKGGQPP-----PPGCPEVRATR 227
P G PG+ P KG Q P P G P R +
Sbjct: 579 SDGPPGHPGKEG------PPGTKGNQGPSGPQGPLGYPGPRGVK 616
Score = 30.0 bits (66), Expect = 4.4
Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 146 PGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL-GDPGQTAFSVL 204
PG PGP G L PGT + GP PG P L G PG+
Sbjct: 838 PGPPGPPGEQGL-----PGTAGKEGTKGDPGP----PGAPGKDGPAGLRGFPGERGLPGT 888
Query: 205 PLTPLQKG-----GQPPPPGCPEVRATRSEREPTRPPAQ 238
P KG G P P G P R P PP +
Sbjct: 889 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 927
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 42.7 bits (99), Expect = 7e-04
Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 36/169 (21%)
Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK--VPGPTAWP--- 188
GA P P PG+PGP G + P GGP + V GP P
Sbjct: 1450 GASGPIGPG-GPPGLPGPAGPKGAKGATGP-----------GGPKGEKGVQGPPGHPGPP 1497
Query: 189 ----EPLPLGDPGQTAFSVLPLTPLQK------GGQPPPPGCPE-----VRATRSEREPT 233
+PLP+ P +T SV +Q+ GG P PG E + + R E E
Sbjct: 1498 GEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQM 1557
Query: 234 RPPAQVEGEDVLVHQ--LLLHQVVEDGQHVVDGDAGVGHAQDAIELGCD 280
R P + Q L H + DG++ VD + G A+DA + C+
Sbjct: 1558 RRPTGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGC--ARDAFRVFCN 1604
Score = 33.5 bits (75), Expect = 0.40
Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 136 GDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD 195
GDP P +PG GP G PG R GGP K + P P P G
Sbjct: 967 GDPGPPG--APGKDGPAGLRGF-----PGERGLPG--TAGGPGLKGNEGPSGP-PGPAGS 1016
Query: 196 PGQ--TAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRP 235
PG+ A S P+ P + G PPG + E+ P P
Sbjct: 1017 PGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGP 1058
Score = 32.7 bits (73), Expect = 0.68
Identities = 35/104 (33%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 133 RGAGDPYAPK--VTSPGIPGPLGTM-TLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWP- 188
RG P PK + G PGP G T T PG + H E GP K PG P
Sbjct: 627 RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGK-PGLPGMPG 685
Query: 189 EPLPLGDPGQTAFSVLPLTPLQKGGQPP-----PPGCPEVRATR 227
P G PG+ P KG Q P P G P R +
Sbjct: 686 SDGPPGHPGKEG------PPGTKGNQGPSGPQGPLGYPGPRGVK 723
Score = 30.0 bits (66), Expect = 4.4
Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 146 PGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL-GDPGQTAFSVL 204
PG PGP G L PGT + GP PG P L G PG+
Sbjct: 945 PGPPGPPGEQGL-----PGTAGKEGTKGDPGP----PGAPGKDGPAGLRGFPGERGLPGT 995
Query: 205 PLTPLQKG-----GQPPPPGCPEVRATRSEREPTRPPAQ 238
P KG G P P G P R P PP +
Sbjct: 996 AGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 1034
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 42.4 bits (98), Expect = 9e-04
Identities = 62/224 (27%), Positives = 78/224 (34%), Gaps = 43/224 (19%)
Query: 48 RTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTE 107
R P PP EP D SH S+ P LA D P GS K + TE
Sbjct: 1289 RPPSPPPEPETTDASHPSVP----PEPLAED-HPPHTPGLCGSLA---------KSQSTE 1334
Query: 108 SDVPFPRSPDHGSPKLE---QRLQSCSQRGAGDPYA-----PKVTSPGIPGPLG-----T 154
+ P +P G P L L S + G P++ P ++S G+P G T
Sbjct: 1335 T---VPATPG-GEPPLSGGSSGLSLSSPQVPGSPFSYPAPSPSLSSGGLPRTPGRDFSFT 1390
Query: 155 MTLSTISNPGTRTTCA-----HHQEGGPAAK-------VPGPTAWPEPLPLGDPGQTAFS 202
T S S P C + GP A +P P P PLPL P
Sbjct: 1391 PTFSEPSGPLLLPVCPLPTGRRDERSGPLASPVLLETGLPLPLPLPLPLPLALPAVLRAQ 1450
Query: 203 VLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGEDVLV 246
TPL P CP + R PP+ + + LV
Sbjct: 1451 ARAPTPLPPLLPAPLASCPPPMKRKPGRPRRSPPSMLSLDGPLV 1494
Score = 33.5 bits (75), Expect = 0.40
Identities = 39/172 (22%), Positives = 57/172 (33%), Gaps = 20/172 (11%)
Query: 50 PPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESD 109
P PP EP D + ++ + L GD + ++ ++ E ++++ +
Sbjct: 592 PRPPPEPGPPDPAGLLSQTAEVALDLVGD------RTPTSEKMDEGQQSSGEDMEISDDE 645
Query: 110 VPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTC 169
+P PK GA AP V +P +P P PG
Sbjct: 646 MPSAPITSADCPK-----PMVVTPGAAAVAAPSVLAPTLPLP---------PPPGFPPLP 691
Query: 170 AHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
P P P P P P P A +V P G PPPP P
Sbjct: 692 PPPPPPPPQPGFPMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPPPPILP 743
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 42.4 bits (98), Expect = 9e-04
Identities = 40/115 (34%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 111 PFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTS-PG-IPGPLGTMTLSTISNPGTRTT 168
P + P H P +Q+ Q D P V PG PG S+ + P T T
Sbjct: 83 PPHQPPPHPQPHQQQQPPPPPQ----DSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPT 138
Query: 169 CAHHQEGGPAAKVPGPTAWPEPL----PLGDPGQTA-FSVLPLTPLQKGGQPPPP 218
G P PGPT P P P G P T S +P TP Q GG PPPP
Sbjct: 139 -----SGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPP 188
Score = 30.8 bits (68), Expect = 2.6
Identities = 38/123 (30%), Positives = 44/123 (35%), Gaps = 47/123 (38%)
Query: 141 PKVTS--PGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPA---AKVPGPTAWPE------ 189
P VTS PG P P T + G TT Q GGP A VPGP P+
Sbjct: 155 PAVTSAPPGAPPP-------TPPSSGVPTTPP--QAGGPPPPPAAVPGPGPGPKQGPGPG 205
Query: 190 ----------PLPLGDPGQTAFSVLPLTPLQKGGQP-----------------PPPGCPE 222
P P G PG + P P + GG+P PPPG P
Sbjct: 206 GPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPG 265
Query: 223 VRA 225
R+
Sbjct: 266 GRS 268
Score = 29.6 bits (65), Expect = 5.8
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 172 HQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSERE 231
+Q GP PG + P+P P Q P P + QPPP P +++
Sbjct: 41 NQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQ--QPPPHQPPPHPQPHQQQQ 98
Query: 232 PTRPP 236
P PP
Sbjct: 99 PPPPP 103
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 42.4 bits (98), Expect = 9e-04
Identities = 45/158 (28%), Positives = 60/158 (37%), Gaps = 31/158 (19%)
Query: 75 LAGDIQEPRFSQTSGSRLAA---DKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCS 131
L +P S SG ++ D+ V P K VP P SP P+
Sbjct: 633 LCSSSSDPAPSDRSGPQILTPLGDRFVIPPHPK-----VPAPFSPPPSKPR--------- 678
Query: 132 QRGAGDPYAPKVTSPGI-PGPLGTMTLSTISNPGTRTTCAHHQEGGPAAK------VPGP 184
+ +P AP + +P + PGP+ T S S P +TT QE +K P P
Sbjct: 679 ---SPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSPPPSPPP 735
Query: 185 TAWPEPLPLGDP----GQTAFSVLPLTPLQKGGQPPPP 218
+ P P P P + S PLQ PPPP
Sbjct: 736 SYHPPPPPTKKPEVVVEAPSASETAEEPLQDPNWPPPP 773
Score = 35.8 bits (81), Expect = 0.081
Identities = 66/259 (25%), Positives = 90/259 (34%), Gaps = 51/259 (19%)
Query: 21 GPHPQASSGLILNGPGTLNRTGV-LQGLRTPPPPTEPRGADCSHY-SLVQVDLPVGLAGD 78
G +AS L + G L+ V L+ L+ PPPP PR H L D P+GL
Sbjct: 467 GSTAEASDTLSIRSSGQLSGRSVSLRKLKRPPPP--PRRTHSLHQRGLAVPDGPLGLPPK 524
Query: 79 ---IQEPRFSQ--TSGSRLAADKEVCPEKRKLTESDVPF---------PRSPDH------ 118
Q+P+ + T+G A CP S VP PRSP+
Sbjct: 525 PERKQQPQLPRPPTTGGSEGAGAAPCPPNP--ANSWVPGLSPGGSRRPPRSPERTLSPSS 582
Query: 119 ------GSPKLEQRLQSCSQRGAGDPYAPK---VTSPGIPGPLGTMTLSTI--------- 160
G+P L + + G PK VTS PG + +L+++
Sbjct: 583 GYSSQSGTPTLPPKGLAGPPASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAP 642
Query: 161 ---SNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD----PGQTAFSVLPLTPLQKGG 213
S P T P KVP P + P P P A +V+P
Sbjct: 643 SDRSGPQILTPLGDRFVIPPHPKVPAPFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDA 702
Query: 214 QPPPPGCPEVRATRSEREP 232
P P P+ T + P
Sbjct: 703 SPQSPPTPQTTLTPLQESP 721
Score = 32.7 bits (73), Expect = 0.68
Identities = 41/163 (25%), Positives = 58/163 (35%), Gaps = 31/163 (19%)
Query: 50 PPPPTEPRGADCSH---------YSLVQVDLPVGLAGD---IQEPRFSQTSGSRLAADKE 97
PPPP P D S + V P G +G + P S +S + L
Sbjct: 771 PPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSATALQIQPP 830
Query: 98 VCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPY----APKVTSPGIPGPLG 153
P+ + P +P H + KL Q+ +G G P AP VT P L
Sbjct: 831 GSPDPPPAPPAPAPASSAPGHVA-KLPQKEPVGCSKGGGPPREDVGAPLVT----PSLLQ 885
Query: 154 TMTLSTISNPGTRTTCA----------HHQEGGPAAKVPGPTA 186
+ L ++ PG T A G A+ VP P++
Sbjct: 886 MVRLRSVGAPGGAPTPALGPSAPQKPLRRALSGRASPVPAPSS 928
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 42.0 bits (97), Expect = 0.001
Identities = 43/154 (27%), Positives = 57/154 (37%), Gaps = 32/154 (20%)
Query: 100 PEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGI----------- 148
P ++ S P P++P P LQ A P +P T P
Sbjct: 711 PASPPMSPSATPPPQAPP---PLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQ 767
Query: 149 --PGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFS---V 203
P P ++ +S ++ P + PA P A P P P PGQ FS
Sbjct: 768 VPPSPPASLPMSPLAKPPPQAP--------PALATPPLQALPSP-PASFPGQAPFSPSAS 818
Query: 204 LPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPA 237
LP++PL PPP P V A + P PPA
Sbjct: 819 LPMSPL----ATPPPQAPPVLAAPLLQVPPSPPA 848
Score = 38.1 bits (87), Expect = 0.016
Identities = 55/201 (27%), Positives = 70/201 (34%), Gaps = 20/201 (9%)
Query: 47 LRTPP---PPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKR 103
L PP PP+ P S + P LA + + FS + A P
Sbjct: 625 LALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSP-PASP 683
Query: 104 KLTESDVPFPRSPDHGSPKLEQR-LQSCSQRGAGDPYAPKVTSPG-IPGPLGTMTLSTIS 161
++ S P P P L LQ A P +P T P P PL L
Sbjct: 684 PVSPSATP----PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPP 739
Query: 162 NPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
+P + P +VP A P PL P S LP++PL K PPP P
Sbjct: 740 SPPASPPMS--PSATPPPRVPPLLAAP---PLQVPPSPPAS-LPMSPLAK----PPPQAP 789
Query: 222 EVRATRSEREPTRPPAQVEGE 242
AT + PPA G+
Sbjct: 790 PALATPPLQALPSPPASFPGQ 810
Score = 37.7 bits (86), Expect = 0.021
Identities = 55/201 (27%), Positives = 70/201 (34%), Gaps = 32/201 (15%)
Query: 50 PPPPTEPRGADCSHYSLVQVDLPVGLA-------GDIQEP--RFSQTSGSRLAADKEVCP 100
P PPTE S S P A G +Q P R +S + L++ P
Sbjct: 198 PRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGP 257
Query: 101 EKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTI 160
R PR+P H S + LQ+ P K +P + GPL + L+T
Sbjct: 258 SARGT-------PRAPAHPSQPKPKGLQALRPPQVTPPR--KDAAPAL-GPLSSSPLATP 307
Query: 161 SNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGC 220
S GT+ + A P P P PL P LPL P P
Sbjct: 308 SPSGTKARPVPPPDN---AATPLPATLPPSPPLATP-------LPLAPPSPSAPPSLQTL 357
Query: 221 PEVRATRSEREP---TRPPAQ 238
P AT + P T PP Q
Sbjct: 358 PSPPATPPSQAPPSMTTPPMQ 378
Score = 29.6 bits (65), Expect = 5.8
Identities = 48/195 (24%), Positives = 65/195 (33%), Gaps = 16/195 (8%)
Query: 46 GLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKL 105
GL TP PP PR + ++V +G AG + ++ +G A +
Sbjct: 23 GLLTPRPPGSPRPPPPVTPAALRV---LGAAGAVGRKPLAERAGGIGGATIPESAPRAGP 79
Query: 106 TESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPG---IPG-PLGTMTLSTIS 161
T S R+P P S RG P A K TSPG PG GT +
Sbjct: 80 TRSAGTSSRNPASRPP--------ASGRGERAPPA-KNTSPGPVSSPGRASGTTRPGPLG 130
Query: 162 NPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
G R + G A + P +A G T + P + G P
Sbjct: 131 QKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLP 190
Query: 222 EVRATRSEREPTRPP 236
+ R PT P
Sbjct: 191 RPAPSARPRPPTEGP 205
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 42.0 bits (97), Expect = 0.001
Identities = 45/155 (29%), Positives = 61/155 (39%), Gaps = 41/155 (26%)
Query: 117 DHGSPKLEQRLQSCSQRG-AGDPYAPKVT-SPGIPGPLGTMTLSTISNPGTRTTCAHHQE 174
+ G P + R S + G G P AP + SPG+PGP G +PG R E
Sbjct: 1297 ERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRG--------DPGERGPRGPKGE 1348
Query: 175 GGPAAKV--------------PGPTAWPEPL-PLGDPGQTAFSVLPLTPLQ-----KGGQ 214
G +V PGP+ P P PLGDPG LP T ++ +G +
Sbjct: 1349 PGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGER 1408
Query: 215 PPP-----------PGCPEVRATRSEREPTRPPAQ 238
PP PG P + + + P PP +
Sbjct: 1409 GPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGK 1443
Score = 37.7 bits (86), Expect = 0.021
Identities = 55/193 (28%), Positives = 66/193 (34%), Gaps = 46/193 (23%)
Query: 50 PPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESD 109
PP P PRG D VG GD P G P R
Sbjct: 1623 PPGPVGPRGRDGE----------VGEKGDEGPPGDPGLPGKAGERGLRGAPGVRG----- 1667
Query: 110 VPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTC 169
P D G P + R S G+ P + PG PGP G + + PG R
Sbjct: 1668 -PVGEKGDQGDPGEDGRNGS---PGSSGPKGDR-GEPGPPGPPGRLV---DTGPGAR--- 1716
Query: 170 AHHQEGGPAAK-VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKG-----GQPPPPGCPEV 223
++G P + GP P GDPG LP P ++G G P P G P V
Sbjct: 1717 ---EKGEPGDRGQEGPRG-----PKGDPG------LPGAPGERGIEGFRGPPGPQGDPGV 1762
Query: 224 RATRSEREPTRPP 236
R E+ PP
Sbjct: 1763 RGPAGEKGDRGPP 1775
Score = 36.2 bits (82), Expect = 0.062
Identities = 57/226 (25%), Positives = 72/226 (31%), Gaps = 44/226 (19%)
Query: 45 QGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRK 104
QG R PP P+G P+G AG+ E +GSR P +
Sbjct: 1467 QGPRGPPGAIGPKGDR-------GFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKG 1519
Query: 105 LTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPG 164
P R + G P G P P V P + GP G + G
Sbjct: 1520 PEGPPGPTGRQGEKGEP--------------GRPGDPAVVGPAVAGPKGEK--GDVGPAG 1563
Query: 165 TRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVR 224
R E GP PG +P P GDPG P+ G+ PPG
Sbjct: 1564 PRGATGVQGERGP----PGLVLPGDPGPKGDPGDRG-------PIGLTGRAGPPGDSGPP 1612
Query: 225 ATRSEREPTRPPAQV--EGEDVLVHQLLLHQVVEDGQHVVDGDAGV 268
+ + PP V G D +V E G GD G+
Sbjct: 1613 GEKGDPGRPGPPGPVGPRGRD--------GEVGEKGDEGPPGDPGL 1650
Score = 35.8 bits (81), Expect = 0.081
Identities = 64/229 (27%), Positives = 77/229 (33%), Gaps = 42/229 (18%)
Query: 44 LQGLRTPPPPTEPR-GADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEK 102
L G PP P P+ D L P GL G EP + G + D+ V K
Sbjct: 2080 LPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPK--GDRGVPGIK 2137
Query: 103 RKLTESDVPFPRSPD--------------HGSPKLE-QRLQSCSQRGAGDPYAPKVTSPG 147
E P PR D G P L+ R G GDP P +PG
Sbjct: 2138 GDRGE---PGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPG--APG 2192
Query: 148 IPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKV-----PGPTAW--PEPLPLGDPGQTA 200
+ GP G S + T GP V PGP+ P+ P G PGQ
Sbjct: 2193 LAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSP-GLPGQVG 2251
Query: 201 FSVLPLTPLQKG-----------GQPPPPGCPEVRATRSEREPTRPPAQ 238
+ P P + G G P PG P + E PT P Q
Sbjct: 2252 ETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQ 2300
Score = 33.5 bits (75), Expect = 0.40
Identities = 58/204 (28%), Positives = 70/204 (34%), Gaps = 46/204 (22%)
Query: 44 LQGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKR 103
LQG R PP P G P G G + P Q E P R
Sbjct: 2169 LQGPRGPPGPVGGHGDPG----------PPGAPG-LAGPAGPQGPSGLKGEPGETGPPGR 2217
Query: 104 KLTESD----VPFPRSPD-----HGSPKLEQRLQSCSQRGA----------GDPYAPKVT 144
LT +P P P GSP L ++ + GA GD +P V
Sbjct: 2218 GLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVP 2277
Query: 145 -SPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLP---LGDPGQTA 200
SPG+PGP+G PG G P AK G P L +G+PG
Sbjct: 2278 GSPGLPGPVGPK-----GEPGPTGAPGQAVVGLPGAK--GEKGAPGGLAGDLVGEPGAKG 2330
Query: 201 FSVLPLTPLQKG-----GQPPPPG 219
LP +KG G+P PG
Sbjct: 2331 DRGLPGPRGEKGEAGRAGEPGDPG 2354
Score = 32.0 bits (71), Expect = 1.2
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 114 RSPDHGSPKLEQRLQSCSQRG-AGDPYAPKVTSPGIPGPLGTM-TLSTISNPGTRTTCAH 171
R+ + G P + + + +G GDP SPG PGP G L PG
Sbjct: 2346 RAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGF 2405
Query: 172 HQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSE 229
+ GP ++ P E G PG+ PL P G PPG ++ + +
Sbjct: 2406 PGQTGPRGEMGQPGPSGERGLAGPPGREGIPG-PLGPPGPPGSVGPPGASGLKGDKGD 2462
Score = 31.6 bits (70), Expect = 1.5
Identities = 36/108 (33%), Positives = 40/108 (37%), Gaps = 24/108 (22%)
Query: 136 GDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD 195
GDP P T G PGP G PG+ T A + G PG P G
Sbjct: 1272 GDPGLPGRT--GAPGPQGP--------PGSAT--AKGERG-----FPGADGRP-----GS 1309
Query: 196 PGQTAFSVLPLTPLQKG--GQPPPPGCPEVRATRSEREPTRPPAQVEG 241
PG+ P P KG G P P G P R R + P QV G
Sbjct: 1310 PGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIG 1357
Score = 29.6 bits (65), Expect = 5.8
Identities = 63/254 (24%), Positives = 84/254 (33%), Gaps = 42/254 (16%)
Query: 133 RGAGDPYAPKVTSPGIPGPLGTMTLSTI-------SNPGTRTTCAHHQEGGPAAKVPGPT 185
RG P PK PG+PG G + +PG R + GP + G +
Sbjct: 1724 RGQEGPRGPK-GDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPG-LDGRS 1781
Query: 186 AWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGEDVL 245
G PG S P K G P G P +R + P+ PP
Sbjct: 1782 GLD-----GKPGAAGPSG-PNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPG-------- 1827
Query: 246 VHQLLLHQVVEDGQHVVDGDAG----VGHAQDAIELGCDEALDEAAEREHGQSRMLLPVT 301
L + EDG+ ++G G G E G D R+ + P
Sbjct: 1828 ----LPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKG-DSGASGREGRDGPKGERGAPGI 1882
Query: 302 LRQQPPQRVPASDVQQFAVDGGDPQVGGARVEDDCEALGGRPDANLPVVLGLAG------ 355
L Q P +P G P GG + D G + + LP GL G
Sbjct: 1883 LGPQGPPGLPGPVGPPGQGFPGVP--GGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVP 1940
Query: 356 --DRFLSTSGMGPS 367
DR L T+G+ S
Sbjct: 1941 NVDRLLETAGIKAS 1954
Score = 29.6 bits (65), Expect = 5.8
Identities = 54/205 (26%), Positives = 71/205 (34%), Gaps = 54/205 (26%)
Query: 24 PQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGADCSHYSLVQVDLPVGLAGDIQEP- 82
PQ GL PG + G QG P T P+G S + LP G G EP
Sbjct: 1885 PQGPPGL----PGPVGPPG--QGFPGVPGGTGPKGDRGETGSKGEQGLP-GERGLRGEPG 1937
Query: 83 ------RFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAG 136
R +T+G + +A +E+ + + S +P P E+R G
Sbjct: 1938 SVPNVDRLLETAGIKASALREIVETWDESSGSFLPVP----------ERRRGPKGDSGEQ 1987
Query: 137 DPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDP 196
P PG GP+G PG R + GP P L LG+
Sbjct: 1988 GP-------PGKEGPIGF--------PGERGLKGDRGDPGPQG--------PPGLALGER 2024
Query: 197 GQTAFSVLPLTPLQKGGQPPPPGCP 221
G P P G+P PG P
Sbjct: 2025 G-------PPGPSGLAGEPGKPGIP 2042
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 42.0 bits (97), Expect = 0.001
Identities = 62/229 (27%), Positives = 88/229 (38%), Gaps = 44/229 (19%)
Query: 16 SLEPTGPHPQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGADCSHYSLVQVDLPVGL 75
S P P P+ L+++GP + +GL T P +P + S L +
Sbjct: 350 SPSPPAPRPERPESLLVSGPSVT----LTEGLGTVRPEQDPAKSPGSPLLLRGLS----- 400
Query: 76 AGDIQEPRFSQTSGSRLAADKEVCPEKR----KLTESDVPFPRSPDHGSPKLEQRLQSCS 131
+GD+ P G A +E P R L ++ RSP G P+ ++CS
Sbjct: 401 SGDVAAP--EPIMGEPGQASEEFQPLARPWRATLAAEELVSHRSP--GEPQ-----ETCS 451
Query: 132 QRGAGDPYAPKVTSPGIP--GPLGTMTLST------ISNPGTRTTCAHHQE-GGPAAKVP 182
+ P+ T PG+P G G M LS+ I PG A P+ + P
Sbjct: 452 ---GTEVERPRQTGPGLPREGARGHMDLSSSEPSQDIEGPGLSILPARDATFSTPSVRQP 508
Query: 183 GPTAWPEPLP--LGDPG---QTAFSVLPLTPLQKGGQPPPPGCPEVRAT 226
P+AW P G P +VLP+ PL PP P P T
Sbjct: 509 DPSAWLSSGPELTGMPRVRLAAPLAVLPMEPL-----PPEPVRPAALLT 552
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 151 PLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQ 210
P G+ L P T + +E AA GP P P +P +T +S +P + +
Sbjct: 451 PRGSPPLPAGPVPSQDITLSSEEEAEVAAPTKGPA--PAPQQCSEP-ETKWSSIPASKPR 507
Query: 211 KG------GQPPPPGCPEVRATRSEREPTRPPAQVE 240
+G PP PG VR +R TRPPA++E
Sbjct: 508 RGTAPTRTAAPPWPGGVSVRTGPEKRSSTRPPAEME 543
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 40.8 bits (94), Expect = 0.003
Identities = 63/241 (26%), Positives = 83/241 (34%), Gaps = 58/241 (24%)
Query: 21 GPHPQASSGLILNGPGTLNRTGVLQG-----LRTPPPPTEPRGADCSHYSLVQVDLPVGL 75
GP P + NG GT+ R + L PPPP EP D +H L + P G
Sbjct: 1160 GPEPPPPLSVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAH--LPPLPPPEGE 1217
Query: 76 AGDIQEPRFSQTSGSRLAADKEVCPEK-RKLTESDVPFPRS---PDHGSPKLEQRLQSCS 131
A +P S K V + KL S P + P GSP++++
Sbjct: 1218 ARKPAKPPVS---------PKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEVKR------ 1262
Query: 132 QRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPL 191
G P +PK P P + ++ G P+ GP+ P P
Sbjct: 1263 AHGTPPPVSPKPPPP----PTAPKPVKAVA-------------GLPSGSA-GPS--PAPS 1302
Query: 192 PLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTR-----------PPAQVE 240
P P A + P TP G P P P A +P R PPA E
Sbjct: 1303 PARQP-PAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPE 1361
Query: 241 G 241
G
Sbjct: 1362 G 1362
Score = 39.3 bits (90), Expect = 0.007
Identities = 55/203 (27%), Positives = 67/203 (33%), Gaps = 36/203 (17%)
Query: 51 PPPTEPRGADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDV 110
PPP EP ADC + Q+ S + + EV P K +
Sbjct: 634 PPPPEPTPADCQSPKMT----------TFQDSELSDELQAAMTGPAEVGPTTEKPSSHLP 683
Query: 111 PFPRSPDHGSPKL--EQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMT------LSTISN 162
P PR+ L R S SQ GD G PGP M+ L
Sbjct: 684 PTPRATTRQDSSLGGRARHMSSSQELLGD---------GPPGPSSPMSRSQEYLLDEGPA 734
Query: 163 PGTRTTCAHHQEGGPAAK----VPGPTAWPEPLPLG----DPGQTAFSVLPLTPLQKGG- 213
PGT A G + K P P + LP G P QT P +P GG
Sbjct: 735 PGTPPREARPGRHGHSIKRASVPPVPGKPRQVLPPGTSHFTPPQTPTKTRPGSPQALGGP 794
Query: 214 QPPPPGCPEVRATRSEREPTRPP 236
P P +V+ T PT P
Sbjct: 795 HGPAPATAKVKPTPQLLPPTERP 817
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 40.8 bits (94), Expect = 0.003
Identities = 65/223 (29%), Positives = 81/223 (36%), Gaps = 39/223 (17%)
Query: 10 GTLAMLSLEPTGPHPQASSGL-----ILNGPGTLNRTGVLQGLRTPPPPTEPRGADCSHY 64
GT ++ + P P Q G + PG R G L G + P P +G + +H
Sbjct: 334 GTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGEL-GPQGPTGPPGAKGQEGAHG 392
Query: 65 SLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVCP-------EKRKLTESDVPFPRSP- 116
+ P G G + P S GS A P EK E P P P
Sbjct: 393 APGAAGNP-GAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPR 451
Query: 117 -DHGSPKLEQRLQSCSQRGAGDPYAPKVT-SPGIPGPLGTM----TLSTISNPGTRTTCA 170
D G+P L G G P + SPG+PGPLGT +PG+R
Sbjct: 452 GDPGAPGLP------GPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSR---- 501
Query: 171 HHQEGGPAAKVPGPTAWPEPL-PLGDPGQTAFSVLPLTPLQKG 212
G P V GP P P P GD G LP P +G
Sbjct: 502 ----GDPGIGVAGP---PGPSGPPGDKGSPGSRGLPGFPGPQG 537
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 40.8 bits (94), Expect = 0.003
Identities = 51/192 (26%), Positives = 66/192 (34%), Gaps = 21/192 (10%)
Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL 193
G GD P P PGP LS + HHQ GP VP P P
Sbjct: 96 GYGDWQPPPPPMPPPPGP----ALSYQKQQQYKHQMLHHQRDGPPGLVPMELESPPESPP 151
Query: 194 GDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGEDVLVHQLLLHQ 253
PG S +P P Q PPP P + +P PPAQ Q L
Sbjct: 152 VPPG----SYMP--PSQ--SYMPPPQPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAP 203
Query: 254 VVEDGQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPVTLRQQPPQRVPA- 312
+ + H+Q L +A + H +S++L P PP P
Sbjct: 204 TPSYSSSSSSSQSYLSHSQS--YLPSSQASPSRPSQGHSKSQLLAP-----PPPSAPPGN 256
Query: 313 -SDVQQFAVDGG 323
+ VQQ ++ G
Sbjct: 257 KTTVQQEPLESG 268
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 40.8 bits (94), Expect = 0.003
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 136 GDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGD 195
G P AP PG P G + ++ P +E P P PT P+P P
Sbjct: 1421 GPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLL----EEKPPPTPPPAPTPQPQPPPPPP 1476
Query: 196 PGQTAF-SVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPA 237
P Q A S PL PPPP P P PPA
Sbjct: 1477 PPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPA 1519
Score = 36.2 bits (82), Expect = 0.062
Identities = 48/191 (25%), Positives = 62/191 (32%), Gaps = 7/191 (3%)
Query: 138 PYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLGDPG 197
P P S G P P L P T Q P P A P P PL P
Sbjct: 1437 PGLPSANSNGTPEP----PLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPT 1492
Query: 198 QTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGEDVLVHQLLLHQVVED 257
++ PL P P PP P A P P A + L LH +
Sbjct: 1493 PSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQ 1552
Query: 258 GQHVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPVTLRQQPPQ--RVPASDV 315
V G+ + E G DE R + L + ++PP RV + +
Sbjct: 1553 ETAAVCGETDEEAGESGGE-GIFRERDEFVIRAEDIPSLKLALQTGREPPPIWRVQKALL 1611
Query: 316 QQFAVDGGDPQ 326
Q+F + D Q
Sbjct: 1612 QKFTPEIKDGQ 1622
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 40.4 bits (93), Expect = 0.003
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 13/120 (10%)
Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
P P HG P ++ + G G P P + PG PG +G PG +
Sbjct: 135 PGLPGHGIPGIKGKPGPQGYPGVGKPGMPGM--PGKPGAMGM--------PGAKGEIGQK 184
Query: 173 QEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPP--PGCPEVRATRSER 230
E GP +PGP P P L G+ LP P KG + P PG +R + ++
Sbjct: 185 GEIGPMG-IPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDK 243
Score = 37.4 bits (85), Expect = 0.028
Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 17/108 (15%)
Query: 133 RGAGDPYAPKVTSP-GIPGPLGTMTLSTISNPG-TRTTCAHHQEGGPAAK---------- 180
+G G P AP V P G+ GP G + L + PG T G P A
Sbjct: 243 KGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIG 302
Query: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKG-----GQPPPPGCPEV 223
VPG P +G PGQ P P KG G P PPG P +
Sbjct: 303 VPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGI 350
Score = 35.8 bits (81), Expect = 0.081
Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 33/108 (30%)
Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL 193
G G P P + PGIPGP G PG +PGP +P +
Sbjct: 501 GIGGPSGP-IGPPGIPGPKG--------EPG----------------LPGPPGFPG---I 532
Query: 194 GDPGQTAFSVLP-----LTPLQKGGQPPPPGCPEVRATRSEREPTRPP 236
G PG P L P + G P PPG P + PT PP
Sbjct: 533 GKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPP 580
Score = 34.3 bits (77), Expect = 0.23
Identities = 36/115 (31%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
P P K EQ L G P P + PG PGP G + + PG
Sbjct: 324 PGQPGFPGGKGEQGLPGLP----GPPGLPGIGKPGFPGPKGDRGMGGV--PG---ALGPR 374
Query: 173 QEGGP--AAKVPGPTAWPE----PLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
E GP A + GP P P P+G PG F P +GG P G P
Sbjct: 375 GEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFP----GPKGEGGIVGPQGPP 425
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 40.4 bits (93), Expect = 0.003
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 13/120 (10%)
Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
P P HG P ++ + G G P P + PG PG +G PG +
Sbjct: 135 PGLPGHGIPGIKGKPGPQGYPGVGKPGMPGM--PGKPGAMGM--------PGAKGEIGQK 184
Query: 173 QEGGPAAKVPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKGGQPPP--PGCPEVRATRSER 230
E GP +PGP P P L G+ LP P KG + P PG +R + ++
Sbjct: 185 GEIGPMG-IPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDK 243
Score = 37.4 bits (85), Expect = 0.028
Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 17/108 (15%)
Query: 133 RGAGDPYAPKVTSP-GIPGPLGTMTLSTISNPG-TRTTCAHHQEGGPAAK---------- 180
+G G P AP V P G+ GP G + L + PG T G P A
Sbjct: 243 KGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIG 302
Query: 181 VPGPTAWPEPLPLGDPGQTAFSVLPLTPLQKG-----GQPPPPGCPEV 223
VPG P +G PGQ P P KG G P PPG P +
Sbjct: 303 VPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGI 350
Score = 35.8 bits (81), Expect = 0.081
Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 33/108 (30%)
Query: 134 GAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPL 193
G G P P + PGIPGP G PG +PGP +P +
Sbjct: 501 GIGGPSGP-IGPPGIPGPKG--------EPG----------------LPGPPGFPG---I 532
Query: 194 GDPGQTAFSVLP-----LTPLQKGGQPPPPGCPEVRATRSEREPTRPP 236
G PG P L P + G P PPG P + PT PP
Sbjct: 533 GKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPP 580
Score = 34.3 bits (77), Expect = 0.23
Identities = 36/115 (31%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Query: 113 PRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMTLSTISNPGTRTTCAHH 172
P P K EQ L G P P + PG PGP G + + PG
Sbjct: 324 PGQPGFPGGKGEQGLPGLP----GPPGLPGIGKPGFPGPKGDRGMGGV--PG---ALGPR 374
Query: 173 QEGGP--AAKVPGPTAWPE----PLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCP 221
E GP A + GP P P P+G PG F P +GG P G P
Sbjct: 375 GEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFP----GPKGEGGIVGPQGPP 425
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 40.0 bits (92), Expect = 0.004
Identities = 63/255 (24%), Positives = 92/255 (36%), Gaps = 24/255 (9%)
Query: 4 LLLVSLGTLAMLSLEPTGPH--PQASSGLILNGPGTLNRTGVLQGLRTPPPPTEPRGADC 61
L+L+S+ LA+ S + + S LI P + G + PPPP +P+G
Sbjct: 3 LILLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPP 62
Query: 62 SHYSLVQVDLPVGLA-GDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGS 120
+ Q P G G + S++ S + P+ + P P P
Sbjct: 63 QGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 122
Query: 121 PKLEQRLQSCSQRGA-------GD----PYAPKVTSPGIPGPLGTMTLSTISNPGTRTTC 169
P+ R Q G GD P +P G P G PG
Sbjct: 123 PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ-- 180
Query: 170 AHHQEGGPAAKVPGPTAWPE-PLPLGDPGQTAFSV--LPLTPLQKGGQ-----PPPPGCP 221
+GG + P P P+ P P GD +++ S P P +GG PPPPG P
Sbjct: 181 GPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKP 240
Query: 222 EVRATRSEREPTRPP 236
+ + +P PP
Sbjct: 241 QGPPPQGGNKPQGPP 255
Score = 35.0 bits (79), Expect = 0.14
Identities = 56/231 (24%), Positives = 79/231 (34%), Gaps = 20/231 (8%)
Query: 18 EPTGPHPQASSGLILNGPGTLNRTGVLQGLRTP----PPPTEPRGADCSHYSLVQVDLPV 73
+P GP PQ P + QG P PPP +P+G + Q P
Sbjct: 76 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPP 135
Query: 74 GLAGDIQEPRFSQTSGSRLAADKEVCPEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQR 133
G +P+ G + + + P K + P + G P + Q +
Sbjct: 136 G------KPQGPPPQGDKSRSPRSP-PGK---PQGPPPQGGNQPQGPPPPPGKPQGPPPQ 185
Query: 134 GAGDPYAPKVTS-PGIPGPLGTMTLSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLP 192
G P P P P P G + S+ S PG +GG + P P P P
Sbjct: 186 GGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQ--GPPPQGGNQPQGPPP---PPGKP 240
Query: 193 LGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGED 243
G P Q P K PP G + ++ RS + P Q EG +
Sbjct: 241 QGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNN 291
>gi|197245373 proline rich 22 isoform 1 [Homo sapiens]
Length = 422
Score = 39.7 bits (91), Expect = 0.006
Identities = 36/104 (34%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 147 GIPGPLGTMTLST---ISNPGTRTTCAHHQE--GGPAAKVPG-PTAWPEPLPLG---DPG 197
G+P G+ L + PG H+Q+ GGP +P P P P LG D G
Sbjct: 106 GVPSAPGSYLLEPQPYLKAPGL-PPYPHYQQAPGGPQFLLPYFPPEGPGPEALGFVGDAG 164
Query: 198 QTAFSVLPLTPLQKGGQPPPPGCPEVR-----ATRSEREPTRPP 236
AF LPL PL++G P PP P+ EPT PP
Sbjct: 165 PAAFVELPLPPLEEGPAPLPPPPPKENKPPPVLITLPAEPTLPP 208
>gi|23503299 proline rich 22 isoform 2 [Homo sapiens]
Length = 420
Score = 39.7 bits (91), Expect = 0.006
Identities = 36/104 (34%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 147 GIPGPLGTMTLST---ISNPGTRTTCAHHQE--GGPAAKVPG-PTAWPEPLPLG---DPG 197
G+P G+ L + PG H+Q+ GGP +P P P P LG D G
Sbjct: 104 GVPSAPGSYLLEPQPYLKAPGL-PPYPHYQQAPGGPQFLLPYFPPEGPGPEALGFVGDAG 162
Query: 198 QTAFSVLPLTPLQKGGQPPPPGCPEVR-----ATRSEREPTRPP 236
AF LPL PL++G P PP P+ EPT PP
Sbjct: 163 PAAFVELPLPPLEEGPAPLPPPPPKENKPPPVLITLPAEPTLPP 206
>gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1662
Score = 39.3 bits (90), Expect = 0.007
Identities = 49/181 (27%), Positives = 68/181 (37%), Gaps = 35/181 (19%)
Query: 190 PLPLGDPGQTAFSVLPLTPLQKGGQPPPPGCPEVRATRSEREPTRPPAQVEGE---DVLV 246
P LG P L P+ G P PPG + R+ + QV+GE + V
Sbjct: 715 PYSLGRPDPNP----SLQPIATGQSPGPPG--------ARRKLPQSEGQVQGERTYSLAV 762
Query: 247 HQLLLHQVVEDGQ----HVVDGDAGVGHAQDAIELGCDEALDEAAEREHGQSRMLLPVTL 302
H L Q+ E V D G GH + +E+ A +E + + R LP +
Sbjct: 763 HPALSPQLSEQKNLSLLSPVPEDKGPGHTRAGLEMSLRAATSSLSEEQVSELRDNLPKEV 822
Query: 303 RQQPPQRV-PASDVQQFAVDGGDPQV---------GGA------RVEDDCEALGGRPDAN 346
R P + P S V + QV GGA R E EA GRP+ +
Sbjct: 823 RLSPKLILDPKSSVTPAIISAALQQVVHNKSLVTAGGALGNPPSRGERRLEASMGRPEVS 882
Query: 347 L 347
+
Sbjct: 883 M 883
>gi|239756197 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 39.3 bits (90), Expect = 0.007
Identities = 51/212 (24%), Positives = 75/212 (35%), Gaps = 14/212 (6%)
Query: 44 LQGLRTPPPPTEPR-GADCSHYSLVQVDLPVGLAGDIQEPRFSQTSGSRLAADKEVC--- 99
L GLRTP + R G S ++ G G + P ++ + D+++
Sbjct: 28 LHGLRTPGRGSRARLGQARSCLGAAGLET-AGAEGSFRGPGGAEKRRKEVGTDEKILKCV 86
Query: 100 ---PEKRKLTESDVPFPRSPDHGSPKLEQRLQSCSQRGAGDPYAPKVTSPGIPGPLGTMT 156
P K ++ ES P G + + S P P+ SPG P G +
Sbjct: 87 PGFPYKSRVAESYFEIQSPPTPGGLGVLGSVSFFSPEFRNPP--PRAQSPGFQQP-GRRS 143
Query: 157 LSTISNPGTRTTCAHHQEGGPAAKVPGPTAWPEPLPLG---DPGQTAFSVLPLTPLQKGG 213
+S C+ + G PGP + P+ G PG T L +G
Sbjct: 144 ARRVSGIRAMRLCSPGSQPGTQNLHPGPREYRTPVGTGIIPRPGGTETLREACAALGEGR 203
Query: 214 QPPPPGCPEVRATRSEREPTRPPAQVEGEDVL 245
QPP A ER P A+ G D+L
Sbjct: 204 QPPLVSAESWEAVGFERRPGELCAEPGGPDLL 235
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,840,202
Number of Sequences: 37866
Number of extensions: 1481554
Number of successful extensions: 6136
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 470
Number of HSP's that attempted gapping in prelim test: 5115
Number of HSP's gapped (non-prelim): 1313
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.