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Search of human proteins with 239744265
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744265 PREDICTED: hypothetical protein XP_002343107 [Homo
sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744265 PREDICTED: hypothetical protein XP_002343107 [Homo ... 306 4e-84
gi|21955174 kinesin family member C2 [Homo sapiens] 31 0.37
gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens] 29 1.4
gi|23199978 p53 target zinc finger protein isoform 2 [Homo sapiens] 29 1.4
gi|30410043 late cornified envelope 2D [Homo sapiens] 29 1.4
gi|7657685 late cornified envelope 2B [Homo sapiens] 28 1.8
gi|187761351 growth factor independent 1 [Homo sapiens] 28 2.4
gi|187761349 growth factor independent 1 [Homo sapiens] 28 2.4
gi|71037377 growth factor independent 1 [Homo sapiens] 28 2.4
gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Hom... 28 2.4
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 28 3.1
gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens] 27 4.1
gi|30410047 late cornified envelope 2C [Homo sapiens] 27 4.1
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 27 4.1
gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens] 27 4.1
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 27 4.1
gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens] 27 4.1
gi|110347463 human immunodeficiency virus type I enhancer bindin... 27 4.1
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 27 5.4
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 27 5.4
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 27 5.4
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 27 5.4
gi|45827729 scribble isoform b [Homo sapiens] 27 5.4
gi|45827731 scribble isoform a [Homo sapiens] 27 5.4
gi|188035924 aldehyde dehydrogenase 7 family, member A1 [Homo sa... 27 7.0
gi|239754370 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|239748924 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|239742946 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 27 7.0
gi|55770876 notch4 preproprotein [Homo sapiens] 27 7.0
>gi|239744265 PREDICTED: hypothetical protein XP_002343107 [Homo
sapiens]
Length = 138
Score = 306 bits (784), Expect = 4e-84
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MARWGRGHPHHPFFFLKQDKGLGAVCPGGTPGIPVAFWAPRLAGGQELGHHLSLPIQLPT 60
MARWGRGHPHHPFFFLKQDKGLGAVCPGGTPGIPVAFWAPRLAGGQELGHHLSLPIQLPT
Sbjct: 1 MARWGRGHPHHPFFFLKQDKGLGAVCPGGTPGIPVAFWAPRLAGGQELGHHLSLPIQLPT 60
Query: 61 AWQQEEWGSAIACPCPHVSPQRGNMRNGGTVLPLSPAFTSLMGKGQEEGNCCKIDDGGCD 120
AWQQEEWGSAIACPCPHVSPQRGNMRNGGTVLPLSPAFTSLMGKGQEEGNCCKIDDGGCD
Sbjct: 61 AWQQEEWGSAIACPCPHVSPQRGNMRNGGTVLPLSPAFTSLMGKGQEEGNCCKIDDGGCD 120
Query: 121 AATSRPGVEGAHAPVMGT 138
AATSRPGVEGAHAPVMGT
Sbjct: 121 AATSRPGVEGAHAPVMGT 138
>gi|21955174 kinesin family member C2 [Homo sapiens]
Length = 838
Score = 30.8 bits (68), Expect = 0.37
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 16 LKQDKGLGAVCPGGTPGI---PVAFWAPRLAGGQELGHHLSLPIQLPTAWQQEEWGSAIA 72
L+ G G VC +P P A A R G+ + S P PT W + WG A
Sbjct: 705 LQVGAGAGQVCACRSPPTRARPPAPLARRSPRGRRISGRQSAPSSSPTEWVKWSWGQPGA 764
Query: 73 ----CPCPHVSPQRGNMRNGGTVLPL 94
P + P +R+ G PL
Sbjct: 765 AGSRAPPGRLLPSAPTLRSPGPPAPL 790
>gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens]
Length = 289
Score = 28.9 bits (63), Expect = 1.4
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 16/61 (26%)
Query: 72 ACPCPHVSPQRGNMRNGGTVLPLSPAFTSLMGKGQEEGNCCKIDDGGCDAATSRPGVEGA 131
A P V PQ G+ + GG V+ + E + CK+ CDA+ S P V A
Sbjct: 121 ATPVVPVPPQMGSFKPGGRVILAT------------ENDYCKL----CDASFSSPAVAQA 164
Query: 132 H 132
H
Sbjct: 165 H 165
>gi|23199978 p53 target zinc finger protein isoform 2 [Homo sapiens]
Length = 288
Score = 28.9 bits (63), Expect = 1.4
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 16/61 (26%)
Query: 72 ACPCPHVSPQRGNMRNGGTVLPLSPAFTSLMGKGQEEGNCCKIDDGGCDAATSRPGVEGA 131
A P V PQ G+ + GG V+ + E + CK+ CDA+ S P V A
Sbjct: 121 ATPVVPVPPQMGSFKPGGRVILAT------------ENDYCKL----CDASFSSPAVAQA 164
Query: 132 H 132
H
Sbjct: 165 H 165
>gi|30410043 late cornified envelope 2D [Homo sapiens]
Length = 110
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 93 PLSPAFTSLMGK------GQEEGNCCKIDDGGCDAATSRP 126
P SPA +S G G G CC GGC + RP
Sbjct: 39 PCSPAVSSCCGPSSGSCCGPSSGGCCSSGGGGCCLSHHRP 78
>gi|7657685 late cornified envelope 2B [Homo sapiens]
Length = 110
Score = 28.5 bits (62), Expect = 1.8
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 93 PLSPAFTSLMGK------GQEEGNCCKIDDGGCDAATSRP 126
P SPA +S G G G CC GGC + RP
Sbjct: 39 PCSPAVSSCCGPISGGCCGPSSGGCCNSGAGGCCLSHHRP 78
>gi|187761351 growth factor independent 1 [Homo sapiens]
Length = 422
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 10 HHPFFFLKQDKGLGAVC-PGGTPGIPVAFWAPRLAGG 45
+ P L++ GLG C P PG P A + P+ A G
Sbjct: 139 YRPCGALERGAGLGLFCEPAPEPGHPAALYGPKRAAG 175
>gi|187761349 growth factor independent 1 [Homo sapiens]
Length = 422
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 10 HHPFFFLKQDKGLGAVC-PGGTPGIPVAFWAPRLAGG 45
+ P L++ GLG C P PG P A + P+ A G
Sbjct: 139 YRPCGALERGAGLGLFCEPAPEPGHPAALYGPKRAAG 175
>gi|71037377 growth factor independent 1 [Homo sapiens]
Length = 422
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 10 HHPFFFLKQDKGLGAVC-PGGTPGIPVAFWAPRLAGG 45
+ P L++ GLG C P PG P A + P+ A G
Sbjct: 139 YRPCGALERGAGLGLFCEPAPEPGHPAALYGPKRAAG 175
>gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Homo
sapiens]
Length = 133
Score = 28.1 bits (61), Expect = 2.4
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 16 LKQDKGLGAVCPGGTPGIPVAFWAPRLAGGQEL---GHHLSLPIQLPTAWQQEEWGSAIA 72
L +D+ G P IP A W G E+ G S P + +AW + + S +
Sbjct: 54 LMEDRSEGGRARWVMPEIP-ALWEADAGGSLEVFSPGTLYSWPWRSASAWLKPSYSSHLN 112
Query: 73 CPCPHVSPQRGNMRNGGTVLP 93
PC +P++ + G P
Sbjct: 113 TPCSSSAPEKHGSGSTGQGRP 133
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 27.7 bits (60), Expect = 3.1
Identities = 26/98 (26%), Positives = 33/98 (33%), Gaps = 20/98 (20%)
Query: 19 DKGLGAVCPGGTPGIPVAFWAPRLAGGQELGHHLSLPIQLPTAWQQ-------------- 64
D+G G PGG G AP GG+ G + P P A
Sbjct: 81 DRGRGRALPGGRLGGRGRGRAPERVGGRGRGRGTAAPRAAPAARGSRPGPAGTMAAGSIT 140
Query: 65 ------EEWGSAIACPCPHVSPQRGNMRNGGTVLPLSP 96
E+ GS P P+R +NGG L + P
Sbjct: 141 TLPALPEDGGSGAFPPGHFKDPKRLYCKNGGFFLRIHP 178
>gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]
Length = 924
Score = 27.3 bits (59), Expect = 4.1
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 24 AVCPGGTPGIPVAFWAPRLAGGQELGHHLSLPIQLPTAWQQEEWGSAIA 72
+V PGGT G +A P LA + H + L QQE WG A A
Sbjct: 809 SVSPGGTGGQKLA-QLPELASAEMSLHVIYLHQLHQQQQQQEPWGEAAA 856
>gi|30410047 late cornified envelope 2C [Homo sapiens]
Length = 110
Score = 27.3 bits (59), Expect = 4.1
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 93 PLSPAFTSLMGK------GQEEGNCCKIDDGGCDAATSRP 126
P PA +S G G G CC GGC + RP
Sbjct: 39 PCFPAVSSCCGPSSGSCCGPSSGGCCSSGAGGCSLSHHRP 78
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 27.3 bits (59), Expect = 4.1
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 68 GSAIACPCPHV-SPQRGNMRNGGTV 91
GS ACPCPH S G + NGG V
Sbjct: 1729 GSCRACPCPHTNSFATGCVVNGGDV 1753
>gi|189217428 laminin alpha 3 subunit isoform 4 [Homo sapiens]
Length = 1668
Score = 27.3 bits (59), Expect = 4.1
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 68 GSAIACPCPHV-SPQRGNMRNGGTV 91
GS ACPCPH S G + NGG V
Sbjct: 120 GSCRACPCPHTNSFATGCVVNGGDV 144
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 27.3 bits (59), Expect = 4.1
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 68 GSAIACPCPHV-SPQRGNMRNGGTV 91
GS ACPCPH S G + NGG V
Sbjct: 1729 GSCRACPCPHTNSFATGCVVNGGDV 1753
>gi|38045908 laminin alpha 3 subunit isoform 2 [Homo sapiens]
Length = 1724
Score = 27.3 bits (59), Expect = 4.1
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 68 GSAIACPCPHV-SPQRGNMRNGGTV 91
GS ACPCPH S G + NGG V
Sbjct: 120 GSCRACPCPHTNSFATGCVVNGGDV 144
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 42 LAGGQELGHHLSLPIQLPTAWQQEEWGSAIACPCPHVS 79
L G G H P LP QQE+ G +A PCP +S
Sbjct: 1111 LHAGLRSGWHHGPPAVLPPL-QQEDPGKQVAGPCPPLS 1147
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 26.9 bits (58), Expect = 5.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 96 PAFTSLMGKGQEEGNCCKIDDGGCDAATSRPGVEGAHAP 134
P F G E+ N I+ G AAT +PG A P
Sbjct: 504 PVFKVFPGSTTEDYNLIVIERGAAAAATGQPGTAPAGTP 542
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 26.9 bits (58), Expect = 5.4
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 17 KQDKG-LGAVCPGGTPGIPVAFWAPRLAGGQ-ELGHHLSLP 55
K +KG GA P G PGIP A AP G + E G L+ P
Sbjct: 514 KGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFP 554
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 26.9 bits (58), Expect = 5.4
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 17 KQDKG-LGAVCPGGTPGIPVAFWAPRLAGGQ-ELGHHLSLP 55
K +KG GA P G PGIP A AP G + E G L+ P
Sbjct: 514 KGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFP 554
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 26.9 bits (58), Expect = 5.4
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 17 KQDKG-LGAVCPGGTPGIPVAFWAPRLAGGQ-ELGHHLSLP 55
K +KG GA P G PGIP A AP G + E G L+ P
Sbjct: 514 KGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFP 554
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 26.9 bits (58), Expect = 5.4
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 18 QDKGLGAVCPGGTPGIPVAFWAPRLAGGQE 47
Q G G V PGG P A WAPR +E
Sbjct: 633 QPDGEGPVAPGGWHNGPHAPWAPRAQKEEE 662
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 26.9 bits (58), Expect = 5.4
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 18 QDKGLGAVCPGGTPGIPVAFWAPRLAGGQE 47
Q G G V PGG P A WAPR +E
Sbjct: 633 QPDGEGPVAPGGWHNGPHAPWAPRAQKEEE 662
>gi|188035924 aldehyde dehydrogenase 7 family, member A1 [Homo
sapiens]
Length = 539
Score = 26.6 bits (57), Expect = 7.0
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 67 WGSAIACPCPHVSPQRGNMRNGGTVLPLSPAFTSLMGKGQEE----GNCCKIDDGGCDAA 122
W +AIA C +V +G T +S A T ++ K E+ G C + GG D
Sbjct: 203 WNNAIAMICGNVCLWKG----APTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGADIG 258
Query: 123 TS 124
T+
Sbjct: 259 TA 260
>gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 26.6 bits (57), Expect = 7.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 63 QQEEWGSAIACPCPHVSP---QRGNMRNGGT 90
Q+ W +A+A CPH +P R +G T
Sbjct: 199 QRRAWAAAVATQCPHRAPTQQHRAGRESGST 229
>gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 26.6 bits (57), Expect = 7.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 63 QQEEWGSAIACPCPHVSP---QRGNMRNGGT 90
Q+ W +A+A CPH +P R +G T
Sbjct: 199 QRRAWAAAVATQCPHRAPTQQHRAGRESGST 229
>gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 26.6 bits (57), Expect = 7.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 63 QQEEWGSAIACPCPHVSP---QRGNMRNGGT 90
Q+ W +A+A CPH +P R +G T
Sbjct: 199 QRRAWAAAVATQCPHRAPTQQHRAGRESGST 229
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 26.6 bits (57), Expect = 7.0
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 22 LGAVCPGGTPGIPVAFWAPRLAGGQELGHHL-SLPIQLPTAWQQEEWGSAIACPCPHVSP 80
LG + P GT + A + G E+ ++ L PT +GSA + P +SP
Sbjct: 1460 LGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF---FGSAPS-PMGGISP 1515
Query: 81 QRGNMRNGGTVLPLSPAFTSLMGKGQEEGNCCKIDDGGCDAATSRPGVEGAHAPVMGT 138
G T P A++ +G G G DA+ PG A +P G+
Sbjct: 1516 AMTPWNQGAT--PAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGS 1571
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 26.6 bits (57), Expect = 7.0
Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 18/60 (30%)
Query: 68 GSAIACPCPHVSPQRGNMRNGGTVLPLSPAFTSLMGKGQEEGNCCKIDDGGCDAATSRPG 127
G C CPH SP P KG E + DG CDA S PG
Sbjct: 1154 GPGFRCSCPHSSP--------------GPRCQKPGAKGCEG----RSGDGACDAGCSGPG 1195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,512,028
Number of Sequences: 37866
Number of extensions: 414036
Number of successful extensions: 932
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 52
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.