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Search of human proteins with 239744119
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744119 PREDICTED: hypothetical protein XP_002343063 [Homo
sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755342 PREDICTED: hypothetical protein [Homo sapiens] 459 e-130
gi|239749829 PREDICTED: hypothetical protein XP_002347170 [Homo ... 459 e-130
gi|239744119 PREDICTED: hypothetical protein XP_002343063 [Homo ... 459 e-130
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 44 8e-05
gi|6912372 forkhead box D3 [Homo sapiens] 41 0.001
gi|48762934 alpha 2 type I collagen [Homo sapiens] 40 0.001
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 39 0.003
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 39 0.003
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 39 0.003
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 39 0.003
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 38 0.006
gi|134244285 Notch homolog 3 [Homo sapiens] 38 0.008
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 37 0.013
gi|126352608 elastin isoform e precursor [Homo sapiens] 37 0.017
gi|126352322 elastin isoform c precursor [Homo sapiens] 37 0.017
gi|126352700 elastin isoform b precursor [Homo sapiens] 37 0.017
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 37 0.017
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 36 0.023
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 36 0.023
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 36 0.023
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 36 0.023
gi|126352446 elastin isoform d precursor [Homo sapiens] 36 0.023
gi|126352440 elastin isoform a precursor [Homo sapiens] 36 0.023
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 36 0.023
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 36 0.029
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 36 0.029
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 36 0.029
gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo sap... 36 0.029
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 36 0.029
gi|4507831 Unc-51-like kinase 1 [Homo sapiens] 35 0.066
>gi|239755342 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 459 bits (1182), Expect = e-130
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG
Sbjct: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
Query: 61 VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120
VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG
Sbjct: 61 VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120
Query: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR
Sbjct: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
Query: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220
WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR
Sbjct: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220
>gi|239749829 PREDICTED: hypothetical protein XP_002347170 [Homo
sapiens]
Length = 220
Score = 459 bits (1182), Expect = e-130
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG
Sbjct: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
Query: 61 VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120
VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG
Sbjct: 61 VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120
Query: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR
Sbjct: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
Query: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220
WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR
Sbjct: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220
>gi|239744119 PREDICTED: hypothetical protein XP_002343063 [Homo
sapiens]
Length = 220
Score = 459 bits (1182), Expect = e-130
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG
Sbjct: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
Query: 61 VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120
VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG
Sbjct: 61 VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120
Query: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR
Sbjct: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
Query: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220
WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR
Sbjct: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 44.3 bits (103), Expect = 8e-05
Identities = 44/151 (29%), Positives = 54/151 (35%), Gaps = 9/151 (5%)
Query: 6 GGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
GG GG GA R+ AG L+ G R L + G +PE R P
Sbjct: 207 GGGGGGGAT--YVFRVRAGELEPLLVAAGGGGRAYLRPRDRGRTQASPEKLENRSEAPGS 264
Query: 66 DKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPPPG 125
+GG AG S A GR + E G +G ++ LG G
Sbjct: 265 GGRGGAAGGGGGWTSRAPSPQAGRSLQEGA-------EGGQGCSEAWATLGWAAAGGFGG 317
Query: 126 WKGLGLATGAGKGLGGSTAASGGALWARGGD 156
G A G G G G A+ LWA G D
Sbjct: 318 GGGACTAGGGGGGYRGGDASETDNLWADGED 348
>gi|6912372 forkhead box D3 [Homo sapiens]
Length = 478
Score = 40.8 bits (94), Expect = 0.001
Identities = 41/155 (26%), Positives = 51/155 (32%), Gaps = 9/155 (5%)
Query: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGT-------- 52
+AAA G AG G P G+ AG Y A L P +
Sbjct: 261 LAAAAGAAGPYGRPYGLHPAAAAGAYSHPAAAAAAAAAAALQYPYALPPVAPVLPPAVPL 320
Query: 53 -PEVKLGRGVGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADR 111
P +LGR + G G L+ L A A P +
Sbjct: 321 LPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAGTAGAAGTTASLIKSEPSARPSFSI 380
Query: 112 LKMLGAGVGAPPPGWKGLGLATGAGKGLGGSTAAS 146
++G G AP G G+A G G GGSTA S
Sbjct: 381 ENIIGGGPAAPGGSAVGAGVAGGTGGSGGGSTAQS 415
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 40.4 bits (93), Expect = 0.001
Identities = 59/183 (32%), Positives = 69/183 (37%), Gaps = 29/183 (15%)
Query: 2 AAALGG-AGGSGAP-----PGVTGRLGAGMYRELVAVTGPE----ERGVLGEPETGAWLG 51
AA L G AG G P PG G GA R LV GP E G GEP + G
Sbjct: 311 AAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQG 370
Query: 52 TPEVKLGRGVGPCEDKKG--GGAGLRPPRLSFALLGAKGRKITEVVVGRCPCR--PGVKG 107
P G E K+G G AG P L G+ G + GR PG +G
Sbjct: 371 PP------GPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRG 424
Query: 108 LADRLKMLGAGVGAPPPGWKGLGLATGAGKGLGGS-----TAASGGALWARGGDCRPSPL 162
+ + G A PG GL +GL GS A G + G D RP P+
Sbjct: 425 ASGPAGVRGPNGDAGRPGEPGL----MGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPI 480
Query: 163 SMA 165
A
Sbjct: 481 GPA 483
Score = 35.4 bits (80), Expect = 0.038
Identities = 56/164 (34%), Positives = 63/164 (38%), Gaps = 43/164 (26%)
Query: 7 GAGGSGAPPGVTGRLGAGMYRELVAVTGPE-ERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
G+ G G PPG+TG GA TGP G+ G P G P GP
Sbjct: 775 GSRGDGGPPGMTGFPGA------AGRTGPPGPSGISGPP------GPP--------GP-- 812
Query: 66 DKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPP-- 123
G GLR PR +G G EV P G KG + AG PP
Sbjct: 813 ---AGKEGLRGPRGDQGPVGRTG----EVGAVGPPGFAGEKGPSGE-----AGTAGPPGT 860
Query: 124 PGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMA 165
PG +GL A G GL GS G G A G P PL +A
Sbjct: 861 PGPQGLLGAPGI-LGLPGSRGERGLPGVAGAVG---EPGPLGIA 900
Score = 30.8 bits (68), Expect = 0.95
Identities = 49/161 (30%), Positives = 55/161 (34%), Gaps = 46/161 (28%)
Query: 7 GAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCED 66
GA G PPG G G P ERGV+G + GTP
Sbjct: 130 GARGPAGPPGKAGEDG-----HPGKPGRPGERGVVGPQGARGFPGTP------------- 171
Query: 67 KKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPPPGW 126
G G + R L G KG+ P PGVKG GA PG
Sbjct: 172 ---GLPGFKGIRGHNGLDGLKGQ----------PGAPGVKGEP------GA------PGE 206
Query: 127 KGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMA 165
G TGA +GL G G G ARG D P+ A
Sbjct: 207 NGTPGQTGA-RGLPGERGRVGAPGPAGARGSDGSVGPVGPA 246
Score = 30.8 bits (68), Expect = 0.95
Identities = 56/172 (32%), Positives = 65/172 (37%), Gaps = 27/172 (15%)
Query: 7 GAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCED 66
GA G PG TG G P ERG +G P G+ + +G VGP
Sbjct: 202 GAPGENGTPGQTGARGL-----------PGERGRVGAPGPAGARGS-DGSVG-PVGPAGP 248
Query: 67 KKGGGAGLRPPRLSFALLGAKGRKITEVVVGRC-PCRPGVKGLADRLKMLGAGVGAPPPG 125
G AG PP GA G K VG P P G + + G PPG
Sbjct: 249 I--GSAG--PP----GFPGAPGPKGEIGAVGNAGPAGPA--GPRGEVGLPGLSGPVGPPG 298
Query: 126 WKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLE 177
G TGA KG G + GA G P P+ AAG+T A V E
Sbjct: 299 NPGANGLTGA-KGAAGLPGVA-GAPGLPGPRGIPGPVG-AAGATGARGLVGE 347
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 6 GGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
GG GG GAPP GR GA P RG G + GA LG P G GP +
Sbjct: 406 GGRGGRGAPPPPRGR-GA-----------PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQ 453
Query: 66 DKKGGGA 72
++G G+
Sbjct: 454 QQRGRGS 460
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 6 GGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
GG GG GAPP GR GA P RG G + GA LG P G GP +
Sbjct: 507 GGRGGRGAPPPPRGR-GA-----------PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQ 554
Query: 66 DKKGGGA 72
++G G+
Sbjct: 555 QQRGRGS 561
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 6 GGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
GG GG GAPP GR GA P RG G + GA LG P G GP +
Sbjct: 403 GGRGGRGAPPPPRGR-GA-----------PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQ 450
Query: 66 DKKGGGA 72
++G G+
Sbjct: 451 QQRGRGS 457
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 6 GGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
GG GG GAPP GR GA P RG G + GA LG P G GP +
Sbjct: 504 GGRGGRGAPPPPRGR-GA-----------PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQ 551
Query: 66 DKKGGGA 72
++G G+
Sbjct: 552 QQRGRGS 558
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 38.1 bits (87), Expect = 0.006
Identities = 46/153 (30%), Positives = 57/153 (37%), Gaps = 17/153 (11%)
Query: 7 GAGGSGAPPGVTGRLGAGMYRELVAVTGPE----------ERGVLGEPETGAWLGTPEVK 56
GA G PPG+ G+ G R V V GP E+G +G+ + G P +
Sbjct: 1118 GAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPR 1177
Query: 57 LGRGVGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVG--RCPCRPGVKGLADRLKM 114
+G E G G+ P +G KG + G P PG KG
Sbjct: 1178 GPQGPTGSEGTPGLPGGVGQP----GAVGEKGERGDAGDPGPPGAPGIPGPKGDIGEKGD 1233
Query: 115 LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG 147
G A PPG KG GA KG G T G
Sbjct: 1234 SGPSGAAGPPGKKGPPGEDGA-KGSVGPTGLPG 1265
Score = 34.3 bits (77), Expect = 0.086
Identities = 38/129 (29%), Positives = 47/129 (36%), Gaps = 21/129 (16%)
Query: 7 GAGGSGAPPGVTGRLGAGMYRELVAVTG-------PEERGVLGEPETGAWLGTPEVKLGR 59
G G+ PPG TG+ G R L+ G P G+ G P +G P G
Sbjct: 581 GERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPP----GE 636
Query: 60 GVGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGV 119
P + G GL P+ L+G G K P PG+ GL LG
Sbjct: 637 PGPPGQQGNHGSQGLPGPQ---GLIGTPGEK-------GPPGNPGIPGLPGSDGPLGHPG 686
Query: 120 GAPPPGWKG 128
P G KG
Sbjct: 687 HEGPTGEKG 695
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 37.7 bits (86), Expect = 0.008
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
A PPG G + G G S A+ A GG CRP+PL+ A W
Sbjct: 1314 ACPPGLSGPSCRSFPGSPPGASNASCAAAPCLHGGSCRPAPLAPFFRCACAQGWTGP--- 1370
Query: 181 WRCCSKSCTPRPETSLSCP 199
RC + + P CP
Sbjct: 1371 -RCEAPAAAPEVSEEPRCP 1388
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 37.0 bits (84), Expect = 0.013
Identities = 30/94 (31%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 120 GAPPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESA 179
G PP K L G G G GGS+ GGA CRP P AG A++ A
Sbjct: 5 GQQPPPAKRLCCRPGGGGGGGGSSGGGGGAGGGYSSACRPGP---RAGGAAAAAACGGGA 61
Query: 180 RWRCCSKSCTPRPETSLSCPPS--PEPWPSDALE 211
T PE+ L E WP +E
Sbjct: 62 ALGLLPPGKTQSPESLLDIAARRVAEKWPFQRVE 95
Score = 28.1 bits (61), Expect = 6.1
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 128 GLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASS 173
G G A G G GG A GG GG SP + +A +T A++
Sbjct: 130 GGGAAGGPGDDSGGGGGAGGGG----GGGSSSSPAATSAAATSAAA 171
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 36.6 bits (83), Expect = 0.017
Identities = 56/205 (27%), Positives = 72/205 (35%), Gaps = 42/205 (20%)
Query: 2 AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
AAA GAG +G PGV G G+ + + G A +GTP
Sbjct: 262 AAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGI------------AGVGTPAAAAAAAA 309
Query: 62 GPCEDKKGGGAGLRP--PRLSFALLGAKGRKITEVVV--GRCPCRPGV------------ 105
K G AGL P P ++G G + V V P PG
Sbjct: 310 AAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVS 369
Query: 106 -----KGLADRLKM---LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG----GALWAR 153
K A K G GVG P G G G G G+GG +G G +
Sbjct: 370 PEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGV 429
Query: 154 GG--DCRPSPLSMAAGSTRASSWVL 176
GG SP + AA + +A+ + L
Sbjct: 430 GGVPGVGISPEAQAAAAAKAAKYGL 454
Score = 32.7 bits (73), Expect = 0.25
Identities = 50/186 (26%), Positives = 68/186 (36%), Gaps = 29/186 (15%)
Query: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
+ +G A G G PGV G G+ GV P G P V + G
Sbjct: 454 LVPGVGVAPGVGVAPGVGVAPGVGL-----------APGVGVAPGVGV---APGVGVAPG 499
Query: 61 VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGR----CPCRPGVKGLADRLKMLG 116
+GP G+ S A + AK + +G GV GL + G
Sbjct: 500 IGP--------GGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPG 551
Query: 117 AGVGAPPPGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMAAGSTRASSW 174
GVGA PG+ + A A K A G G L A GG P + + AG A++
Sbjct: 552 LGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGV-VGAGPAAAAAA 610
Query: 175 VLESAR 180
+A+
Sbjct: 611 AKAAAK 616
Score = 29.6 bits (65), Expect = 2.1
Identities = 41/136 (30%), Positives = 48/136 (35%), Gaps = 27/136 (19%)
Query: 5 LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPC 64
LG GG G P GV G A A + G++G G G GVG
Sbjct: 587 LGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLG----------GLGVGGL 636
Query: 65 EDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGA----GVG 120
GG G PP + AK K +G GV G A + + G G G
Sbjct: 637 GVPGVGGLGGIPPAAA-----AKAAKYGAAGLG------GVLGGAGQFPLGGVAARPGFG 685
Query: 121 APP--PGWKGLGLATG 134
P PG LG A G
Sbjct: 686 LSPIFPGGACLGKACG 701
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 36.6 bits (83), Expect = 0.017
Identities = 56/205 (27%), Positives = 72/205 (35%), Gaps = 42/205 (20%)
Query: 2 AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
AAA GAG +G PGV G G+ + + G A +GTP
Sbjct: 267 AAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGI------------AGVGTPAAAAAAAA 314
Query: 62 GPCEDKKGGGAGLRP--PRLSFALLGAKGRKITEVVV--GRCPCRPGV------------ 105
K G AGL P P ++G G + V V P PG
Sbjct: 315 AAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVS 374
Query: 106 -----KGLADRLKM---LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG----GALWAR 153
K A K G GVG P G G G G G+GG +G G +
Sbjct: 375 PEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGV 434
Query: 154 GG--DCRPSPLSMAAGSTRASSWVL 176
GG SP + AA + +A+ + L
Sbjct: 435 GGVPGVGISPEAQAAAAAKAAKYGL 459
Score = 32.7 bits (73), Expect = 0.25
Identities = 50/186 (26%), Positives = 68/186 (36%), Gaps = 29/186 (15%)
Query: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
+ +G A G G PGV G G+ GV P G P V + G
Sbjct: 459 LVPGVGVAPGVGVAPGVGVAPGVGL-----------APGVGVAPGVGV---APGVGVAPG 504
Query: 61 VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGR----CPCRPGVKGLADRLKMLG 116
+GP G+ S A + AK + +G GV GL + G
Sbjct: 505 IGP--------GGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPG 556
Query: 117 AGVGAPPPGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMAAGSTRASSW 174
GVGA PG+ + A A K A G G L A GG P + + AG A++
Sbjct: 557 LGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGV-VGAGPAAAAAA 615
Query: 175 VLESAR 180
+A+
Sbjct: 616 AKAAAK 621
Score = 27.7 bits (60), Expect = 8.0
Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 5 LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETG----AWLGTPEVKLGRG 60
LG GG G P GV G A A + G++G G LG P V G
Sbjct: 592 LGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGG 651
Query: 61 VGPCEDKKGG--------GAGLRPPRLSFALLG-AKGRK 90
+ P K G GL P A LG A GRK
Sbjct: 652 IPPAAAAKAAKYGVAARPGFGLSPIFPGGACLGKACGRK 690
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 36.6 bits (83), Expect = 0.017
Identities = 56/205 (27%), Positives = 72/205 (35%), Gaps = 42/205 (20%)
Query: 2 AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
AAA GAG +G PGV G G+ + + G A +GTP
Sbjct: 252 AAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGI------------AGVGTPAAAAAAAA 299
Query: 62 GPCEDKKGGGAGLRP--PRLSFALLGAKGRKITEVVV--GRCPCRPGV------------ 105
K G AGL P P ++G G + V V P PG
Sbjct: 300 AAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVS 359
Query: 106 -----KGLADRLKM---LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG----GALWAR 153
K A K G GVG P G G G G G+GG +G G +
Sbjct: 360 PEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGV 419
Query: 154 GG--DCRPSPLSMAAGSTRASSWVL 176
GG SP + AA + +A+ + L
Sbjct: 420 GGVPGVGISPEAQAAAAAKAAKYGL 444
Score = 32.7 bits (73), Expect = 0.25
Identities = 50/186 (26%), Positives = 68/186 (36%), Gaps = 29/186 (15%)
Query: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
+ +G A G G PGV G G+ GV P G P V + G
Sbjct: 444 LVPGVGVAPGVGVAPGVGVAPGVGL-----------APGVGVAPGVGV---APGVGVAPG 489
Query: 61 VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGR----CPCRPGVKGLADRLKMLG 116
+GP G+ S A + AK + +G GV GL + G
Sbjct: 490 IGP--------GGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPG 541
Query: 117 AGVGAPPPGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMAAGSTRASSW 174
GVGA PG+ + A A K A G G L A GG P + + AG A++
Sbjct: 542 LGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGV-VGAGPAAAAAA 600
Query: 175 VLESAR 180
+A+
Sbjct: 601 AKAAAK 606
Score = 27.7 bits (60), Expect = 8.0
Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 5 LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETG----AWLGTPEVKLGRG 60
LG GG G P GV G A A + G++G G LG P V G
Sbjct: 577 LGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGG 636
Query: 61 VGPCEDKKGG--------GAGLRPPRLSFALLG-AKGRK 90
+ P K G GL P A LG A GRK
Sbjct: 637 IPPAAAAKAAKYGVAARPGFGLSPIFPGGACLGKACGRK 675
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 36.6 bits (83), Expect = 0.017
Identities = 53/201 (26%), Positives = 75/201 (37%), Gaps = 23/201 (11%)
Query: 9 GGSGAPP---GVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
GGSG PP + R G G V G E+R G P L VG
Sbjct: 207 GGSGTPPPPRALWNRHG-GAAGARAQVRGSEKRACPGSTLP------PSSVLAGCVGT-- 257
Query: 66 DKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPPPG 125
+ G G++ R S + G + P +P +G A ++ G G G+
Sbjct: 258 -RARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGS---- 312
Query: 126 WKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTR---ASSWVLESARWR 182
GL G+G+G G + + AL R G P P+ + G SS +S
Sbjct: 313 --GLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRS 370
Query: 183 CCSKSCTPRPETS-LSCPPSP 202
++ PR LSCP +P
Sbjct: 371 PSVRAFGPRLGAGRLSCPQAP 391
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 36.2 bits (82), Expect = 0.023
Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Query: 6 GGAGGSGAP--PGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGP 63
G G G P PG+ G+ G ++ + P E G GEP G P V G+
Sbjct: 619 GPPGPPGPPGLPGIPGKPGTDVF--MGPPGSPGEDGPAGEPGPPGPEGQPGVDGATGLPG 676
Query: 64 CEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPP 123
+ +KG R P S G G + P PG KG A ++G P
Sbjct: 677 MKGEKGA----RGPNGSVGEKGDPGNR-------GLPGPPGKKGQAGPPGVMGPPGPPGP 725
Query: 124 PGWKGLGLATGAG 136
PG G G G G
Sbjct: 726 PGPPGPGCTMGLG 738
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 36.2 bits (82), Expect = 0.023
Identities = 51/193 (26%), Positives = 70/193 (36%), Gaps = 36/193 (18%)
Query: 5 LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPC 64
L G G+ PPG G+ G + + GP+ G +G P G V RG+
Sbjct: 734 LAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ--GPIGYPGPRGVKGADGV---RGLKGS 788
Query: 65 EDKKG--------GGAGLRPPRLSFALLGAKGRKITEVVVGRC--PCRPGVKGLADRLKM 114
+ +KG G GL+ R +G +G E GR PG G A
Sbjct: 789 KGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 848
Query: 115 LGA-GVGAPP-----------PGWKGLGLATGAGKGLGGSTAASG--------GALWARG 154
LG G+ P PG+ G GA +G+ G G G+ ARG
Sbjct: 849 LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA-RGVAGKPGPRGQRGPTGPRGSRGARG 907
Query: 155 GDCRPSPLSMAAG 167
+P P + G
Sbjct: 908 PTGKPGPKGTSGG 920
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 36.2 bits (82), Expect = 0.023
Identities = 51/193 (26%), Positives = 70/193 (36%), Gaps = 36/193 (18%)
Query: 5 LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPC 64
L G G+ PPG G+ G + + GP+ G +G P G V RG+
Sbjct: 683 LAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ--GPIGYPGPRGVKGADGV---RGLKGS 737
Query: 65 EDKKG--------GGAGLRPPRLSFALLGAKGRKITEVVVGRC--PCRPGVKGLADRLKM 114
+ +KG G GL+ R +G +G E GR PG G A
Sbjct: 738 KGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 797
Query: 115 LGA-GVGAPP-----------PGWKGLGLATGAGKGLGGSTAASG--------GALWARG 154
LG G+ P PG+ G GA +G+ G G G+ ARG
Sbjct: 798 LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA-RGVAGKPGPRGQRGPTGPRGSRGARG 856
Query: 155 GDCRPSPLSMAAG 167
+P P + G
Sbjct: 857 PTGKPGPKGTSGG 869
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 36.2 bits (82), Expect = 0.023
Identities = 51/193 (26%), Positives = 70/193 (36%), Gaps = 36/193 (18%)
Query: 5 LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPC 64
L G G+ PPG G+ G + + GP+ G +G P G V RG+
Sbjct: 722 LAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ--GPIGYPGPRGVKGADGV---RGLKGS 776
Query: 65 EDKKG--------GGAGLRPPRLSFALLGAKGRKITEVVVGRC--PCRPGVKGLADRLKM 114
+ +KG G GL+ R +G +G E GR PG G A
Sbjct: 777 KGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 836
Query: 115 LGA-GVGAPP-----------PGWKGLGLATGAGKGLGGSTAASG--------GALWARG 154
LG G+ P PG+ G GA +G+ G G G+ ARG
Sbjct: 837 LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA-RGVAGKPGPRGQRGPTGPRGSRGARG 895
Query: 155 GDCRPSPLSMAAG 167
+P P + G
Sbjct: 896 PTGKPGPKGTSGG 908
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 36.2 bits (82), Expect = 0.023
Identities = 55/203 (27%), Positives = 71/203 (34%), Gaps = 42/203 (20%)
Query: 2 AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
AAA GAG +G PGV G G+ + + G A +GTP
Sbjct: 267 AAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGI------------AGVGTPAAAAAAAA 314
Query: 62 GPCEDKKGGGAGLRP--PRLSFALLGAKGRKITEVVV--GRCPCRPGV------------ 105
K G AGL P P ++G G + V V P PG
Sbjct: 315 AAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVS 374
Query: 106 -----KGLADRLKM---LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG----GALWAR 153
K A K G GVG P G G G G G+GG +G G +
Sbjct: 375 PEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGV 434
Query: 154 GG--DCRPSPLSMAAGSTRASSW 174
GG SP + AA + +A+ +
Sbjct: 435 GGVPGVGISPEAQAAAAAKAAKY 457
Score = 32.7 bits (73), Expect = 0.25
Identities = 53/185 (28%), Positives = 68/185 (36%), Gaps = 23/185 (12%)
Query: 2 AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
AA G G G PGV G G VA GV P G P V + G+
Sbjct: 473 AAQFGLVPGVGVAPGVGVAPGVG-----VAPGVGLAPGVGVAPGVGV---APGVGVAPGI 524
Query: 62 GPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGR----CPCRPGVKGLADRLKMLGA 117
GP G+ S A + AK + +G GV GL + G
Sbjct: 525 GP--------GGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPGL 576
Query: 118 GVGAPPPGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMAAGSTRASSWV 175
GVGA PG+ + A A K A G G L A GG P + + AG A++
Sbjct: 577 GVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGV-VGAGPAAAAAAA 635
Query: 176 LESAR 180
+A+
Sbjct: 636 KAAAK 640
Score = 32.7 bits (73), Expect = 0.25
Identities = 51/166 (30%), Positives = 57/166 (34%), Gaps = 28/166 (16%)
Query: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
+A +G A G G PGV G G A + + A LG LG G
Sbjct: 502 LAPGVGVAPGVGVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVG 561
Query: 61 VGPCEDKKGGGAGLRPPRLSF------------ALLGAKGRKITEVVVGRCPCRPGVKGL 108
VG G G G P L AL AK K V PGV G
Sbjct: 562 VG----VPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAV-------PGVLG- 609
Query: 109 ADRLKMLGAGVGAPPPGWKGLGLATGAGKGLGGSTAASGGALWARG 154
L LG GVG P G G G A A + AA G + A G
Sbjct: 610 --GLGALG-GVGI-PGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAG 651
Score = 27.7 bits (60), Expect = 8.0
Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 5 LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETG----AWLGTPEVKLGRG 60
LG GG G P GV G A A + G++G G LG P V G
Sbjct: 611 LGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGG 670
Query: 61 VGPCEDKKGG--------GAGLRPPRLSFALLG-AKGRK 90
+ P K G GL P A LG A GRK
Sbjct: 671 IPPAAAAKAAKYGVAARPGFGLSPIFPGGACLGKACGRK 709
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 36.2 bits (82), Expect = 0.023
Identities = 55/203 (27%), Positives = 71/203 (34%), Gaps = 42/203 (20%)
Query: 2 AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
AAA GAG +G PGV G G+ + + G A +GTP
Sbjct: 262 AAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGI------------AGVGTPAAAAAAAA 309
Query: 62 GPCEDKKGGGAGLRP--PRLSFALLGAKGRKITEVVV--GRCPCRPGV------------ 105
K G AGL P P ++G G + V V P PG
Sbjct: 310 AAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVS 369
Query: 106 -----KGLADRLKM---LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG----GALWAR 153
K A K G GVG P G G G G G+GG +G G +
Sbjct: 370 PEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGV 429
Query: 154 GG--DCRPSPLSMAAGSTRASSW 174
GG SP + AA + +A+ +
Sbjct: 430 GGVPGVGISPEAQAAAAAKAAKY 452
Score = 32.7 bits (73), Expect = 0.25
Identities = 53/185 (28%), Positives = 68/185 (36%), Gaps = 23/185 (12%)
Query: 2 AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
AA G G G PGV G G VA GV P G P V + G+
Sbjct: 468 AAQFGLVPGVGVAPGVGVAPGVG-----VAPGVGLAPGVGVAPGVGV---APGVGVAPGI 519
Query: 62 GPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGR----CPCRPGVKGLADRLKMLGA 117
GP G+ S A + AK + +G GV GL + G
Sbjct: 520 GP--------GGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPGL 571
Query: 118 GVGAPPPGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMAAGSTRASSWV 175
GVGA PG+ + A A K A G G L A GG P + + AG A++
Sbjct: 572 GVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGV-VGAGPAAAAAAA 630
Query: 176 LESAR 180
+A+
Sbjct: 631 KAAAK 635
Score = 32.7 bits (73), Expect = 0.25
Identities = 51/166 (30%), Positives = 57/166 (34%), Gaps = 28/166 (16%)
Query: 1 MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
+A +G A G G PGV G G A + + A LG LG G
Sbjct: 497 LAPGVGVAPGVGVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVG 556
Query: 61 VGPCEDKKGGGAGLRPPRLSF------------ALLGAKGRKITEVVVGRCPCRPGVKGL 108
VG G G G P L AL AK K V PGV G
Sbjct: 557 VG----VPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAV-------PGVLG- 604
Query: 109 ADRLKMLGAGVGAPPPGWKGLGLATGAGKGLGGSTAASGGALWARG 154
L LG GVG P G G G A A + AA G + A G
Sbjct: 605 --GLGALG-GVGI-PGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAG 646
Score = 29.6 bits (65), Expect = 2.1
Identities = 41/136 (30%), Positives = 48/136 (35%), Gaps = 27/136 (19%)
Query: 5 LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPC 64
LG GG G P GV G A A + G++G G G GVG
Sbjct: 606 LGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLG----------GLGVGGL 655
Query: 65 EDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGA----GVG 120
GG G PP + AK K +G GV G A + + G G G
Sbjct: 656 GVPGVGGLGGIPPAAA-----AKAAKYGAAGLG------GVLGGAGQFPLGGVAARPGFG 704
Query: 121 APP--PGWKGLGLATG 134
P PG LG A G
Sbjct: 705 LSPIFPGGACLGKACG 720
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 36.2 bits (82), Expect = 0.023
Identities = 42/136 (30%), Positives = 49/136 (36%), Gaps = 38/136 (27%)
Query: 4 ALGGAGGSGAP--PGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
A G G G P PG+ G G L G + RG+ GE ++G P + G
Sbjct: 370 AQGEPGSQGEPGDPGLPGPPG------LSIGDGDQRRGLPGEMGPKGFIGDPGIPALYGG 423
Query: 62 GPCEDKKGGGAGLRPPRLS---------FALLGAKGRKITEVVVGRCPCRPGVKGLADRL 112
P D K G G PP L F L GAKGR P PG +G
Sbjct: 424 PPGPDGKRGPPG--PPGLPGPPGPDGFLFGLKGAKGR----AGFPGLPGSPGARG----- 472
Query: 113 KMLGAGVGAPPPGWKG 128
P GWKG
Sbjct: 473 ----------PKGWKG 478
Score = 28.1 bits (61), Expect = 6.1
Identities = 41/126 (32%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 6 GGAGGSGAP-----PGVTGRLG-AGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGR 59
G G +GAP G++G G AG E P +G+ G P GTP +K R
Sbjct: 869 GDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMP------GTPGLKGDR 922
Query: 60 GVGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGV 119
G P D G GL+ R F G+KG + PG+KGLA G+
Sbjct: 923 G-SPGMDGFQGMPGLKG-RPGFP--GSKGEAGFFGI-------PGLKGLAGEPGFKGSRG 971
Query: 120 GAPPPG 125
PPG
Sbjct: 972 DPGPPG 977
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 35.8 bits (81), Expect = 0.029
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 116 GAGVGAPPPGWKGLGLATGAGKGLGGST------AAS------GGALWARGGDCRPSPLS 163
G G G G G G G G GGS AAS GG + A GG +P++
Sbjct: 76 GGGGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPIN 135
Query: 164 MAAG----STRASSWVLESARWRCCSKSCTPRPETSLSCPPSP 202
+ G S+ +SS S+ S SC P P + PSP
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSP 178
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 35.8 bits (81), Expect = 0.029
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 116 GAGVGAPPPGWKGLGLATGAGKGLGGST------AAS------GGALWARGGDCRPSPLS 163
G G G G G G G G GGS AAS GG + A GG +P++
Sbjct: 76 GGGGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPIN 135
Query: 164 MAAG----STRASSWVLESARWRCCSKSCTPRPETSLSCPPSP 202
+ G S+ +SS S+ S SC P P + PSP
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSP 178
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 35.8 bits (81), Expect = 0.029
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 116 GAGVGAPPPGWKGLGLATGAGKGLGGST------AAS------GGALWARGGDCRPSPLS 163
G G G G G G G G GGS AAS GG + A GG +P++
Sbjct: 76 GGGGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPIN 135
Query: 164 MAAG----STRASSWVLESARWRCCSKSCTPRPETSLSCPPSP 202
+ G S+ +SS S+ S SC P P + PSP
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSP 178
>gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 166
Score = 35.8 bits (81), Expect = 0.029
Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 27/110 (24%)
Query: 116 GAGVGAPPPGWKGLGLAT------------------GAGKGLGGSTAASGGALWARGGDC 157
G G PGW+ GLAT AGKG +A + G LW
Sbjct: 26 GGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKGRRAVSAGARGVLWL----- 80
Query: 158 RPSPLSMAAGSTRASSWVLESARWRCCSKSC---TPRPETSLSCPPSPEP 204
P ++ + TR WR ++ C R L PP P+P
Sbjct: 81 -PKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQPPPPQP 129
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 35.8 bits (81), Expect = 0.029
Identities = 49/149 (32%), Positives = 56/149 (37%), Gaps = 20/149 (13%)
Query: 6 GGAGGSG--APPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGP 63
GG GS PPG G G + + G G LG P G P +K RG
Sbjct: 733 GGEKGSSPVGPPGPPGSPGVNGQK---GIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPG 789
Query: 64 CEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGA-GVGAP 122
C + G AG+ LG KG K E G PGV G GA G+
Sbjct: 790 CPGAE-GPAGIP------GFLGLKGPKGREGHAG----FPGVPGPPGHSCERGAPGIPGQ 838
Query: 123 P--PGWKGLGLATGAGKGLGGSTAASGGA 149
P PG+ G A G GKG G G A
Sbjct: 839 PGLPGYPGSPGAPG-GKGQPGDVGPPGPA 866
Score = 28.9 bits (63), Expect = 3.6
Identities = 49/176 (27%), Positives = 62/176 (35%), Gaps = 31/176 (17%)
Query: 2 AAALGGAGGSGAP--PGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGR 59
A+ G G G P PG G GA + L + GP RG G P G P
Sbjct: 1078 ASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQGP--RGSPGRPGPPGSSGPPGCPGDH 1135
Query: 60 GVGPCEDKKG-----GGAGLR-------PPRLS--------FALLGAKGRKITEVVVGRC 99
G+ + G G GL+ PP + L G KG+K T+ G
Sbjct: 1136 GMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLH 1195
Query: 100 PCRP----GVKGLADRLKMLGAGVGAPPPGWKGLGLATG--AGKGLGGSTAASGGA 149
P G+ GL G+ G PPG +G G G G A+G A
Sbjct: 1196 DVGPPGPVGIPGLKGERGDPGS-PGISPPGPRGKKGPPGPPGSSGPPGPAGATGRA 1250
Score = 28.5 bits (62), Expect = 4.7
Identities = 44/155 (28%), Positives = 57/155 (36%), Gaps = 52/155 (33%)
Query: 5 LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVG-- 62
L G+ G+G P G TG P E G++G P G P +K GVG
Sbjct: 197 LPGSWGAGGPAGPTGY--------------PGEPGLVGPP---GQPGRPGLKGNPGVGVK 239
Query: 63 -----PCEDKKGGGAG----LRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLK 113
P E + G G + PP F L KG K G+KG+ +
Sbjct: 240 GQMGDPGEVGQQGSPGPTLLVEPP--DFCLY--KGEK-------------GIKGIPGMVG 282
Query: 114 MLGAGVGAPPPGWKG-LGLATGAGKGLGGSTAASG 147
+ G PPG KG G+ KG+ G G
Sbjct: 283 LPG------PPGRKGESGIGAKGEKGIPGFPGPRG 311
Score = 27.7 bits (60), Expect = 8.0
Identities = 41/141 (29%), Positives = 47/141 (33%), Gaps = 25/141 (17%)
Query: 2 AAALGGAGGSGAP--PGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGR 59
A +G G G P PG+ G G R A P + G G P G P G
Sbjct: 401 AGMIGPPGPQGFPGLPGLPGEAGIPG-RPDSAPGKPGKPGSPGLPGAPGLQGLP----GS 455
Query: 60 GVGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGV 119
V C G G++ G KG K E G C C PG G
Sbjct: 456 SVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNE---GLCACEPGPMG------------ 500
Query: 120 GAPPPGWKGLGLATGAGKGLG 140
PPG GL G+ LG
Sbjct: 501 ---PPGPPGLPGRQGSKGDLG 518
>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
Length = 1050
Score = 34.7 bits (78), Expect = 0.066
Identities = 52/190 (27%), Positives = 65/190 (34%), Gaps = 49/190 (25%)
Query: 27 RELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCEDKKGGGAGLRPPRLSFALLGA 86
R+ V +T P R + E G + G P LG G+ P ED KG P SF+
Sbjct: 648 RQGVVMTPPRNRTLPDLSEVGPFHGQP---LGPGLRPGEDPKG------PFGRSFS---- 694
Query: 87 KGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPPPGW------KGLGLATGAGKGLG 140
L D L G AP PG K + +A AG G
Sbjct: 695 ------------------TSRLTDLLLKAAFGTQAPDPGSTESLQEKPMEIAPSAG--FG 734
Query: 141 GSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESARWRCCSKSCTPRPETSL---- 196
GS A GG PSP+ GS + S + R R S T +S
Sbjct: 735 GSLHPGARA----GGTSSPSPVVFTVGSPPSGSTPPQGPRTRMFSAGPTGSASSSARHLV 790
Query: 197 --SCPPSPEP 204
C +P P
Sbjct: 791 PGPCSEAPAP 800
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,012,696
Number of Sequences: 37866
Number of extensions: 751263
Number of successful extensions: 4635
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 234
Number of HSP's that attempted gapping in prelim test: 3971
Number of HSP's gapped (non-prelim): 789
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.