Guide to the Human Genome
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Search of human proteins with 239744119

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744119 PREDICTED: hypothetical protein XP_002343063 [Homo
sapiens]
         (220 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755342 PREDICTED: hypothetical protein [Homo sapiens]           459   e-130
gi|239749829 PREDICTED: hypothetical protein XP_002347170 [Homo ...   459   e-130
gi|239744119 PREDICTED: hypothetical protein XP_002343063 [Homo ...   459   e-130
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs...    44   8e-05
gi|6912372 forkhead box D3 [Homo sapiens]                              41   0.001
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     40   0.001
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    39   0.003
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    39   0.003
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    39   0.003
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    39   0.003
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    38   0.006
gi|134244285 Notch homolog 3 [Homo sapiens]                            38   0.008
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]        37   0.013
gi|126352608 elastin isoform e precursor [Homo sapiens]                37   0.017
gi|126352322 elastin isoform c precursor [Homo sapiens]                37   0.017
gi|126352700 elastin isoform b precursor [Homo sapiens]                37   0.017
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]            37   0.017
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]         36   0.023
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    36   0.023
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    36   0.023
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    36   0.023
gi|126352446 elastin isoform d precursor [Homo sapiens]                36   0.023
gi|126352440 elastin isoform a precursor [Homo sapiens]                36   0.023
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]     36   0.023
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]               36   0.029
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]               36   0.029
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]               36   0.029
gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo sap...    36   0.029
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         36   0.029
gi|4507831 Unc-51-like kinase 1 [Homo sapiens]                         35   0.066

>gi|239755342 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 220

 Score =  459 bits (1182), Expect = e-130
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
           MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG
Sbjct: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60

Query: 61  VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120
           VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG
Sbjct: 61  VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120

Query: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
           APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR
Sbjct: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180

Query: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220
           WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR
Sbjct: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220


>gi|239749829 PREDICTED: hypothetical protein XP_002347170 [Homo
           sapiens]
          Length = 220

 Score =  459 bits (1182), Expect = e-130
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
           MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG
Sbjct: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60

Query: 61  VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120
           VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG
Sbjct: 61  VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120

Query: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
           APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR
Sbjct: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180

Query: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220
           WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR
Sbjct: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220


>gi|239744119 PREDICTED: hypothetical protein XP_002343063 [Homo
           sapiens]
          Length = 220

 Score =  459 bits (1182), Expect = e-130
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
           MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG
Sbjct: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60

Query: 61  VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120
           VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG
Sbjct: 61  VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVG 120

Query: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
           APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR
Sbjct: 121 APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180

Query: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220
           WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR
Sbjct: 181 WRCCSKSCTPRPETSLSCPPSPEPWPSDALEPALASSMSR 220


>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
           [Homo sapiens]
          Length = 864

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 44/151 (29%), Positives = 54/151 (35%), Gaps = 9/151 (5%)

Query: 6   GGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
           GG GG GA      R+ AG    L+   G   R  L   + G    +PE    R   P  
Sbjct: 207 GGGGGGGAT--YVFRVRAGELEPLLVAAGGGGRAYLRPRDRGRTQASPEKLENRSEAPGS 264

Query: 66  DKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPPPG 125
             +GG AG      S A     GR + E          G +G ++    LG        G
Sbjct: 265 GGRGGAAGGGGGWTSRAPSPQAGRSLQEGA-------EGGQGCSEAWATLGWAAAGGFGG 317

Query: 126 WKGLGLATGAGKGLGGSTAASGGALWARGGD 156
             G   A G G G  G  A+    LWA G D
Sbjct: 318 GGGACTAGGGGGGYRGGDASETDNLWADGED 348


>gi|6912372 forkhead box D3 [Homo sapiens]
          Length = 478

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 41/155 (26%), Positives = 51/155 (32%), Gaps = 9/155 (5%)

Query: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGT-------- 52
           +AAA G AG  G P G+     AG Y    A         L  P     +          
Sbjct: 261 LAAAAGAAGPYGRPYGLHPAAAAGAYSHPAAAAAAAAAAALQYPYALPPVAPVLPPAVPL 320

Query: 53  -PEVKLGRGVGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADR 111
            P  +LGR       + G G  L+   L  A   A                P  +     
Sbjct: 321 LPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAGTAGAAGTTASLIKSEPSARPSFSI 380

Query: 112 LKMLGAGVGAPPPGWKGLGLATGAGKGLGGSTAAS 146
             ++G G  AP     G G+A G G   GGSTA S
Sbjct: 381 ENIIGGGPAAPGGSAVGAGVAGGTGGSGGGSTAQS 415


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 59/183 (32%), Positives = 69/183 (37%), Gaps = 29/183 (15%)

Query: 2   AAALGG-AGGSGAP-----PGVTGRLGAGMYRELVAVTGPE----ERGVLGEPETGAWLG 51
           AA L G AG  G P     PG  G  GA   R LV   GP     E G  GEP +    G
Sbjct: 311 AAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQG 370

Query: 52  TPEVKLGRGVGPCEDKKG--GGAGLRPPRLSFALLGAKGRKITEVVVGRCPCR--PGVKG 107
            P      G    E K+G  G AG   P     L G+ G +      GR      PG +G
Sbjct: 371 PP------GPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRG 424

Query: 108 LADRLKMLGAGVGAPPPGWKGLGLATGAGKGLGGS-----TAASGGALWARGGDCRPSPL 162
            +    + G    A  PG  GL       +GL GS      A   G +   G D RP P+
Sbjct: 425 ASGPAGVRGPNGDAGRPGEPGL----MGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPI 480

Query: 163 SMA 165
             A
Sbjct: 481 GPA 483



 Score = 35.4 bits (80), Expect = 0.038
 Identities = 56/164 (34%), Positives = 63/164 (38%), Gaps = 43/164 (26%)

Query: 7   GAGGSGAPPGVTGRLGAGMYRELVAVTGPE-ERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
           G+ G G PPG+TG  GA         TGP    G+ G P      G P        GP  
Sbjct: 775 GSRGDGGPPGMTGFPGA------AGRTGPPGPSGISGPP------GPP--------GP-- 812

Query: 66  DKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPP-- 123
               G  GLR PR     +G  G    EV     P   G KG +       AG   PP  
Sbjct: 813 ---AGKEGLRGPRGDQGPVGRTG----EVGAVGPPGFAGEKGPSGE-----AGTAGPPGT 860

Query: 124 PGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMA 165
           PG +GL  A G   GL GS    G  G   A G    P PL +A
Sbjct: 861 PGPQGLLGAPGI-LGLPGSRGERGLPGVAGAVG---EPGPLGIA 900



 Score = 30.8 bits (68), Expect = 0.95
 Identities = 49/161 (30%), Positives = 55/161 (34%), Gaps = 46/161 (28%)

Query: 7   GAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCED 66
           GA G   PPG  G  G            P ERGV+G      + GTP             
Sbjct: 130 GARGPAGPPGKAGEDG-----HPGKPGRPGERGVVGPQGARGFPGTP------------- 171

Query: 67  KKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPPPGW 126
              G  G +  R    L G KG+          P  PGVKG        GA      PG 
Sbjct: 172 ---GLPGFKGIRGHNGLDGLKGQ----------PGAPGVKGEP------GA------PGE 206

Query: 127 KGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMA 165
            G    TGA +GL G     G  G   ARG D    P+  A
Sbjct: 207 NGTPGQTGA-RGLPGERGRVGAPGPAGARGSDGSVGPVGPA 246



 Score = 30.8 bits (68), Expect = 0.95
 Identities = 56/172 (32%), Positives = 65/172 (37%), Gaps = 27/172 (15%)

Query: 7   GAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCED 66
           GA G    PG TG  G            P ERG +G P      G+ +  +G  VGP   
Sbjct: 202 GAPGENGTPGQTGARGL-----------PGERGRVGAPGPAGARGS-DGSVG-PVGPAGP 248

Query: 67  KKGGGAGLRPPRLSFALLGAKGRKITEVVVGRC-PCRPGVKGLADRLKMLGAGVGAPPPG 125
              G AG  PP       GA G K     VG   P  P   G    + + G      PPG
Sbjct: 249 I--GSAG--PP----GFPGAPGPKGEIGAVGNAGPAGPA--GPRGEVGLPGLSGPVGPPG 298

Query: 126 WKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLE 177
             G    TGA KG  G    + GA    G    P P+  AAG+T A   V E
Sbjct: 299 NPGANGLTGA-KGAAGLPGVA-GAPGLPGPRGIPGPVG-AAGATGARGLVGE 347


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 6   GGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
           GG GG GAPP   GR GA           P  RG  G  + GA LG P    G   GP +
Sbjct: 406 GGRGGRGAPPPPRGR-GA-----------PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQ 453

Query: 66  DKKGGGA 72
            ++G G+
Sbjct: 454 QQRGRGS 460


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 6   GGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
           GG GG GAPP   GR GA           P  RG  G  + GA LG P    G   GP +
Sbjct: 507 GGRGGRGAPPPPRGR-GA-----------PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQ 554

Query: 66  DKKGGGA 72
            ++G G+
Sbjct: 555 QQRGRGS 561


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 6   GGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
           GG GG GAPP   GR GA           P  RG  G  + GA LG P    G   GP +
Sbjct: 403 GGRGGRGAPPPPRGR-GA-----------PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQ 450

Query: 66  DKKGGGA 72
            ++G G+
Sbjct: 451 QQRGRGS 457


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 6   GGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
           GG GG GAPP   GR GA           P  RG  G  + GA LG P    G   GP +
Sbjct: 504 GGRGGRGAPPPPRGR-GA-----------PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQ 551

Query: 66  DKKGGGA 72
            ++G G+
Sbjct: 552 QQRGRGS 558


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 46/153 (30%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 7    GAGGSGAPPGVTGRLGAGMYRELVAVTGPE----------ERGVLGEPETGAWLGTPEVK 56
            GA G   PPG+ G+ G    R  V V GP           E+G +G+  +    G P  +
Sbjct: 1118 GAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPR 1177

Query: 57   LGRGVGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVG--RCPCRPGVKGLADRLKM 114
              +G    E   G   G+  P      +G KG +      G    P  PG KG       
Sbjct: 1178 GPQGPTGSEGTPGLPGGVGQP----GAVGEKGERGDAGDPGPPGAPGIPGPKGDIGEKGD 1233

Query: 115  LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG 147
             G    A PPG KG     GA KG  G T   G
Sbjct: 1234 SGPSGAAGPPGKKGPPGEDGA-KGSVGPTGLPG 1265



 Score = 34.3 bits (77), Expect = 0.086
 Identities = 38/129 (29%), Positives = 47/129 (36%), Gaps = 21/129 (16%)

Query: 7   GAGGSGAPPGVTGRLGAGMYRELVAVTG-------PEERGVLGEPETGAWLGTPEVKLGR 59
           G  G+  PPG TG+ G    R L+   G       P   G+ G P     +G P    G 
Sbjct: 581 GERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPP----GE 636

Query: 60  GVGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGV 119
              P +    G  GL  P+    L+G  G K         P  PG+ GL      LG   
Sbjct: 637 PGPPGQQGNHGSQGLPGPQ---GLIGTPGEK-------GPPGNPGIPGLPGSDGPLGHPG 686

Query: 120 GAPPPGWKG 128
              P G KG
Sbjct: 687 HEGPTGEKG 695


>gi|134244285 Notch homolog 3 [Homo sapiens]
          Length = 2321

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 121  APPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESAR 180
            A PPG  G    +  G   G S A+   A    GG CRP+PL+       A  W      
Sbjct: 1314 ACPPGLSGPSCRSFPGSPPGASNASCAAAPCLHGGSCRPAPLAPFFRCACAQGWTGP--- 1370

Query: 181  WRCCSKSCTPRPETSLSCP 199
             RC + +  P       CP
Sbjct: 1371 -RCEAPAAAPEVSEEPRCP 1388


>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
          Length = 1215

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 30/94 (31%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 120 GAPPPGWKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESA 179
           G  PP  K L    G G G GGS+   GGA       CRP P    AG   A++     A
Sbjct: 5   GQQPPPAKRLCCRPGGGGGGGGSSGGGGGAGGGYSSACRPGP---RAGGAAAAAACGGGA 61

Query: 180 RWRCCSKSCTPRPETSLSCPPS--PEPWPSDALE 211
                    T  PE+ L        E WP   +E
Sbjct: 62  ALGLLPPGKTQSPESLLDIAARRVAEKWPFQRVE 95



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 128 GLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTRASS 173
           G G A G G   GG   A GG     GG    SP + +A +T A++
Sbjct: 130 GGGAAGGPGDDSGGGGGAGGGG----GGGSSSSPAATSAAATSAAA 171


>gi|126352608 elastin isoform e precursor [Homo sapiens]
          Length = 705

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 56/205 (27%), Positives = 72/205 (35%), Gaps = 42/205 (20%)

Query: 2   AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
           AAA  GAG +G  PGV G    G+   +  + G             A +GTP        
Sbjct: 262 AAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGI------------AGVGTPAAAAAAAA 309

Query: 62  GPCEDKKGGGAGLRP--PRLSFALLGAKGRKITEVVV--GRCPCRPGV------------ 105
                K G  AGL P  P     ++G  G  +  V V     P  PG             
Sbjct: 310 AAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVS 369

Query: 106 -----KGLADRLKM---LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG----GALWAR 153
                K  A   K     G GVG  P    G G   G G G+GG    +G    G +   
Sbjct: 370 PEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGV 429

Query: 154 GG--DCRPSPLSMAAGSTRASSWVL 176
           GG      SP + AA + +A+ + L
Sbjct: 430 GGVPGVGISPEAQAAAAAKAAKYGL 454



 Score = 32.7 bits (73), Expect = 0.25
 Identities = 50/186 (26%), Positives = 68/186 (36%), Gaps = 29/186 (15%)

Query: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
           +   +G A G G  PGV    G G+             GV   P  G     P V +  G
Sbjct: 454 LVPGVGVAPGVGVAPGVGVAPGVGL-----------APGVGVAPGVGV---APGVGVAPG 499

Query: 61  VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGR----CPCRPGVKGLADRLKMLG 116
           +GP         G+     S A + AK +      +G          GV GL     + G
Sbjct: 500 IGP--------GGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPG 551

Query: 117 AGVGAPPPGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMAAGSTRASSW 174
            GVGA  PG+  +  A  A K      A  G  G L A GG   P  + + AG   A++ 
Sbjct: 552 LGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGV-VGAGPAAAAAA 610

Query: 175 VLESAR 180
              +A+
Sbjct: 611 AKAAAK 616



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 41/136 (30%), Positives = 48/136 (35%), Gaps = 27/136 (19%)

Query: 5   LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPC 64
           LG  GG G P GV G   A       A     + G++G    G          G GVG  
Sbjct: 587 LGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLG----------GLGVGGL 636

Query: 65  EDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGA----GVG 120
                GG G  PP  +     AK  K     +G      GV G A +  + G     G G
Sbjct: 637 GVPGVGGLGGIPPAAA-----AKAAKYGAAGLG------GVLGGAGQFPLGGVAARPGFG 685

Query: 121 APP--PGWKGLGLATG 134
             P  PG   LG A G
Sbjct: 686 LSPIFPGGACLGKACG 701


>gi|126352322 elastin isoform c precursor [Homo sapiens]
          Length = 692

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 56/205 (27%), Positives = 72/205 (35%), Gaps = 42/205 (20%)

Query: 2   AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
           AAA  GAG +G  PGV G    G+   +  + G             A +GTP        
Sbjct: 267 AAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGI------------AGVGTPAAAAAAAA 314

Query: 62  GPCEDKKGGGAGLRP--PRLSFALLGAKGRKITEVVV--GRCPCRPGV------------ 105
                K G  AGL P  P     ++G  G  +  V V     P  PG             
Sbjct: 315 AAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVS 374

Query: 106 -----KGLADRLKM---LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG----GALWAR 153
                K  A   K     G GVG  P    G G   G G G+GG    +G    G +   
Sbjct: 375 PEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGV 434

Query: 154 GG--DCRPSPLSMAAGSTRASSWVL 176
           GG      SP + AA + +A+ + L
Sbjct: 435 GGVPGVGISPEAQAAAAAKAAKYGL 459



 Score = 32.7 bits (73), Expect = 0.25
 Identities = 50/186 (26%), Positives = 68/186 (36%), Gaps = 29/186 (15%)

Query: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
           +   +G A G G  PGV    G G+             GV   P  G     P V +  G
Sbjct: 459 LVPGVGVAPGVGVAPGVGVAPGVGL-----------APGVGVAPGVGV---APGVGVAPG 504

Query: 61  VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGR----CPCRPGVKGLADRLKMLG 116
           +GP         G+     S A + AK +      +G          GV GL     + G
Sbjct: 505 IGP--------GGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPG 556

Query: 117 AGVGAPPPGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMAAGSTRASSW 174
            GVGA  PG+  +  A  A K      A  G  G L A GG   P  + + AG   A++ 
Sbjct: 557 LGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGV-VGAGPAAAAAA 615

Query: 175 VLESAR 180
              +A+
Sbjct: 616 AKAAAK 621



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 5   LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETG----AWLGTPEVKLGRG 60
           LG  GG G P GV G   A       A     + G++G    G      LG P V    G
Sbjct: 592 LGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGG 651

Query: 61  VGPCEDKKGG--------GAGLRPPRLSFALLG-AKGRK 90
           + P    K          G GL P     A LG A GRK
Sbjct: 652 IPPAAAAKAAKYGVAARPGFGLSPIFPGGACLGKACGRK 690


>gi|126352700 elastin isoform b precursor [Homo sapiens]
          Length = 677

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 56/205 (27%), Positives = 72/205 (35%), Gaps = 42/205 (20%)

Query: 2   AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
           AAA  GAG +G  PGV G    G+   +  + G             A +GTP        
Sbjct: 252 AAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGI------------AGVGTPAAAAAAAA 299

Query: 62  GPCEDKKGGGAGLRP--PRLSFALLGAKGRKITEVVV--GRCPCRPGV------------ 105
                K G  AGL P  P     ++G  G  +  V V     P  PG             
Sbjct: 300 AAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVS 359

Query: 106 -----KGLADRLKM---LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG----GALWAR 153
                K  A   K     G GVG  P    G G   G G G+GG    +G    G +   
Sbjct: 360 PEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGV 419

Query: 154 GG--DCRPSPLSMAAGSTRASSWVL 176
           GG      SP + AA + +A+ + L
Sbjct: 420 GGVPGVGISPEAQAAAAAKAAKYGL 444



 Score = 32.7 bits (73), Expect = 0.25
 Identities = 50/186 (26%), Positives = 68/186 (36%), Gaps = 29/186 (15%)

Query: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
           +   +G A G G  PGV    G G+             GV   P  G     P V +  G
Sbjct: 444 LVPGVGVAPGVGVAPGVGVAPGVGL-----------APGVGVAPGVGV---APGVGVAPG 489

Query: 61  VGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGR----CPCRPGVKGLADRLKMLG 116
           +GP         G+     S A + AK +      +G          GV GL     + G
Sbjct: 490 IGP--------GGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPG 541

Query: 117 AGVGAPPPGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMAAGSTRASSW 174
            GVGA  PG+  +  A  A K      A  G  G L A GG   P  + + AG   A++ 
Sbjct: 542 LGVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGV-VGAGPAAAAAA 600

Query: 175 VLESAR 180
              +A+
Sbjct: 601 AKAAAK 606



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 5   LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETG----AWLGTPEVKLGRG 60
           LG  GG G P GV G   A       A     + G++G    G      LG P V    G
Sbjct: 577 LGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGG 636

Query: 61  VGPCEDKKGG--------GAGLRPPRLSFALLG-AKGRK 90
           + P    K          G GL P     A LG A GRK
Sbjct: 637 IPPAAAAKAAKYGVAARPGFGLSPIFPGGACLGKACGRK 675


>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 466

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 53/201 (26%), Positives = 75/201 (37%), Gaps = 23/201 (11%)

Query: 9   GGSGAPP---GVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCE 65
           GGSG PP    +  R G G       V G E+R   G          P   L   VG   
Sbjct: 207 GGSGTPPPPRALWNRHG-GAAGARAQVRGSEKRACPGSTLP------PSSVLAGCVGT-- 257

Query: 66  DKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPPPG 125
            +  G  G++  R S     + G +         P +P  +G A   ++ G G G+    
Sbjct: 258 -RARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGS---- 312

Query: 126 WKGLGLATGAGKGLGGSTAASGGALWARGGDCRPSPLSMAAGSTR---ASSWVLESARWR 182
             GL    G+G+G G + +    AL  R G   P P+ +  G       SS   +S    
Sbjct: 313 --GLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRS 370

Query: 183 CCSKSCTPRPETS-LSCPPSP 202
              ++  PR     LSCP +P
Sbjct: 371 PSVRAFGPRLGAGRLSCPQAP 391


>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
          Length = 1388

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 6   GGAGGSGAP--PGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGP 63
           G  G  G P  PG+ G+ G  ++  +     P E G  GEP      G P V    G+  
Sbjct: 619 GPPGPPGPPGLPGIPGKPGTDVF--MGPPGSPGEDGPAGEPGPPGPEGQPGVDGATGLPG 676

Query: 64  CEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPP 123
            + +KG     R P  S    G  G +         P  PG KG A    ++G      P
Sbjct: 677 MKGEKGA----RGPNGSVGEKGDPGNR-------GLPGPPGKKGQAGPPGVMGPPGPPGP 725

Query: 124 PGWKGLGLATGAG 136
           PG  G G   G G
Sbjct: 726 PGPPGPGCTMGLG 738


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 51/193 (26%), Positives = 70/193 (36%), Gaps = 36/193 (18%)

Query: 5   LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPC 64
           L G  G+  PPG  G+ G    +  +   GP+  G +G P      G   V   RG+   
Sbjct: 734 LAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ--GPIGYPGPRGVKGADGV---RGLKGS 788

Query: 65  EDKKG--------GGAGLRPPRLSFALLGAKGRKITEVVVGRC--PCRPGVKGLADRLKM 114
           + +KG        G  GL+  R     +G +G    E   GR      PG  G A     
Sbjct: 789 KGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 848

Query: 115 LGA-GVGAPP-----------PGWKGLGLATGAGKGLGGSTAASG--------GALWARG 154
           LG  G+   P           PG+ G     GA +G+ G     G        G+  ARG
Sbjct: 849 LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA-RGVAGKPGPRGQRGPTGPRGSRGARG 907

Query: 155 GDCRPSPLSMAAG 167
              +P P   + G
Sbjct: 908 PTGKPGPKGTSGG 920


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
           sapiens]
          Length = 1767

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 51/193 (26%), Positives = 70/193 (36%), Gaps = 36/193 (18%)

Query: 5   LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPC 64
           L G  G+  PPG  G+ G    +  +   GP+  G +G P      G   V   RG+   
Sbjct: 683 LAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ--GPIGYPGPRGVKGADGV---RGLKGS 737

Query: 65  EDKKG--------GGAGLRPPRLSFALLGAKGRKITEVVVGRC--PCRPGVKGLADRLKM 114
           + +KG        G  GL+  R     +G +G    E   GR      PG  G A     
Sbjct: 738 KGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 797

Query: 115 LGA-GVGAPP-----------PGWKGLGLATGAGKGLGGSTAASG--------GALWARG 154
           LG  G+   P           PG+ G     GA +G+ G     G        G+  ARG
Sbjct: 798 LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA-RGVAGKPGPRGQRGPTGPRGSRGARG 856

Query: 155 GDCRPSPLSMAAG 167
              +P P   + G
Sbjct: 857 PTGKPGPKGTSGG 869


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
           sapiens]
          Length = 1806

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 51/193 (26%), Positives = 70/193 (36%), Gaps = 36/193 (18%)

Query: 5   LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPC 64
           L G  G+  PPG  G+ G    +  +   GP+  G +G P      G   V   RG+   
Sbjct: 722 LAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ--GPIGYPGPRGVKGADGV---RGLKGS 776

Query: 65  EDKKG--------GGAGLRPPRLSFALLGAKGRKITEVVVGRC--PCRPGVKGLADRLKM 114
           + +KG        G  GL+  R     +G +G    E   GR      PG  G A     
Sbjct: 777 KGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK 836

Query: 115 LGA-GVGAPP-----------PGWKGLGLATGAGKGLGGSTAASG--------GALWARG 154
           LG  G+   P           PG+ G     GA +G+ G     G        G+  ARG
Sbjct: 837 LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGA-RGVAGKPGPRGQRGPTGPRGSRGARG 895

Query: 155 GDCRPSPLSMAAG 167
              +P P   + G
Sbjct: 896 PTGKPGPKGTSGG 908


>gi|126352446 elastin isoform d precursor [Homo sapiens]
          Length = 711

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 55/203 (27%), Positives = 71/203 (34%), Gaps = 42/203 (20%)

Query: 2   AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
           AAA  GAG +G  PGV G    G+   +  + G             A +GTP        
Sbjct: 267 AAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGI------------AGVGTPAAAAAAAA 314

Query: 62  GPCEDKKGGGAGLRP--PRLSFALLGAKGRKITEVVV--GRCPCRPGV------------ 105
                K G  AGL P  P     ++G  G  +  V V     P  PG             
Sbjct: 315 AAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVS 374

Query: 106 -----KGLADRLKM---LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG----GALWAR 153
                K  A   K     G GVG  P    G G   G G G+GG    +G    G +   
Sbjct: 375 PEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGV 434

Query: 154 GG--DCRPSPLSMAAGSTRASSW 174
           GG      SP + AA + +A+ +
Sbjct: 435 GGVPGVGISPEAQAAAAAKAAKY 457



 Score = 32.7 bits (73), Expect = 0.25
 Identities = 53/185 (28%), Positives = 68/185 (36%), Gaps = 23/185 (12%)

Query: 2   AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
           AA  G   G G  PGV    G G     VA       GV   P  G     P V +  G+
Sbjct: 473 AAQFGLVPGVGVAPGVGVAPGVG-----VAPGVGLAPGVGVAPGVGV---APGVGVAPGI 524

Query: 62  GPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGR----CPCRPGVKGLADRLKMLGA 117
           GP         G+     S A + AK +      +G          GV GL     + G 
Sbjct: 525 GP--------GGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPGL 576

Query: 118 GVGAPPPGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMAAGSTRASSWV 175
           GVGA  PG+  +  A  A K      A  G  G L A GG   P  + + AG   A++  
Sbjct: 577 GVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGV-VGAGPAAAAAAA 635

Query: 176 LESAR 180
             +A+
Sbjct: 636 KAAAK 640



 Score = 32.7 bits (73), Expect = 0.25
 Identities = 51/166 (30%), Positives = 57/166 (34%), Gaps = 28/166 (16%)

Query: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
           +A  +G A G G  PGV    G G      A     +     +    A LG     LG G
Sbjct: 502 LAPGVGVAPGVGVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVG 561

Query: 61  VGPCEDKKGGGAGLRPPRLSF------------ALLGAKGRKITEVVVGRCPCRPGVKGL 108
           VG      G G G   P L              AL  AK  K    V       PGV G 
Sbjct: 562 VG----VPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAV-------PGVLG- 609

Query: 109 ADRLKMLGAGVGAPPPGWKGLGLATGAGKGLGGSTAASGGALWARG 154
              L  LG GVG  P G  G G A  A      + AA  G + A G
Sbjct: 610 --GLGALG-GVGI-PGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAG 651



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 5   LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETG----AWLGTPEVKLGRG 60
           LG  GG G P GV G   A       A     + G++G    G      LG P V    G
Sbjct: 611 LGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGG 670

Query: 61  VGPCEDKKGG--------GAGLRPPRLSFALLG-AKGRK 90
           + P    K          G GL P     A LG A GRK
Sbjct: 671 IPPAAAAKAAKYGVAARPGFGLSPIFPGGACLGKACGRK 709


>gi|126352440 elastin isoform a precursor [Homo sapiens]
          Length = 724

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 55/203 (27%), Positives = 71/203 (34%), Gaps = 42/203 (20%)

Query: 2   AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
           AAA  GAG +G  PGV G    G+   +  + G             A +GTP        
Sbjct: 262 AAAKFGAGAAGVLPGVGGAGVPGVPGAIPGIGGI------------AGVGTPAAAAAAAA 309

Query: 62  GPCEDKKGGGAGLRP--PRLSFALLGAKGRKITEVVV--GRCPCRPGV------------ 105
                K G  AGL P  P     ++G  G  +  V V     P  PG             
Sbjct: 310 AAKAAKYGAAAGLVPGGPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVS 369

Query: 106 -----KGLADRLKM---LGAGVGAPPPGWKGLGLATGAGKGLGGSTAASG----GALWAR 153
                K  A   K     G GVG  P    G G   G G G+GG    +G    G +   
Sbjct: 370 PEAAAKAAAKAAKYGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGV 429

Query: 154 GG--DCRPSPLSMAAGSTRASSW 174
           GG      SP + AA + +A+ +
Sbjct: 430 GGVPGVGISPEAQAAAAAKAAKY 452



 Score = 32.7 bits (73), Expect = 0.25
 Identities = 53/185 (28%), Positives = 68/185 (36%), Gaps = 23/185 (12%)

Query: 2   AAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
           AA  G   G G  PGV    G G     VA       GV   P  G     P V +  G+
Sbjct: 468 AAQFGLVPGVGVAPGVGVAPGVG-----VAPGVGLAPGVGVAPGVGV---APGVGVAPGI 519

Query: 62  GPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGR----CPCRPGVKGLADRLKMLGA 117
           GP         G+     S A + AK +      +G          GV GL     + G 
Sbjct: 520 GP--------GGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPGL 571

Query: 118 GVGAPPPGWKGLGLATGAGKGLGGSTAASG--GALWARGGDCRPSPLSMAAGSTRASSWV 175
           GVGA  PG+  +  A  A K      A  G  G L A GG   P  + + AG   A++  
Sbjct: 572 GVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGV-VGAGPAAAAAAA 630

Query: 176 LESAR 180
             +A+
Sbjct: 631 KAAAK 635



 Score = 32.7 bits (73), Expect = 0.25
 Identities = 51/166 (30%), Positives = 57/166 (34%), Gaps = 28/166 (16%)

Query: 1   MAAALGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRG 60
           +A  +G A G G  PGV    G G      A     +     +    A LG     LG G
Sbjct: 497 LAPGVGVAPGVGVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVG 556

Query: 61  VGPCEDKKGGGAGLRPPRLSF------------ALLGAKGRKITEVVVGRCPCRPGVKGL 108
           VG      G G G   P L              AL  AK  K    V       PGV G 
Sbjct: 557 VG----VPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAKAAKYGAAV-------PGVLG- 604

Query: 109 ADRLKMLGAGVGAPPPGWKGLGLATGAGKGLGGSTAASGGALWARG 154
              L  LG GVG  P G  G G A  A      + AA  G + A G
Sbjct: 605 --GLGALG-GVGI-PGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAG 646



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 41/136 (30%), Positives = 48/136 (35%), Gaps = 27/136 (19%)

Query: 5   LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPC 64
           LG  GG G P GV G   A       A     + G++G    G          G GVG  
Sbjct: 606 LGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLG----------GLGVGGL 655

Query: 65  EDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGA----GVG 120
                GG G  PP  +     AK  K     +G      GV G A +  + G     G G
Sbjct: 656 GVPGVGGLGGIPPAAA-----AKAAKYGAAGLG------GVLGGAGQFPLGGVAARPGFG 704

Query: 121 APP--PGWKGLGLATG 134
             P  PG   LG A G
Sbjct: 705 LSPIFPGGACLGKACG 720


>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
          Length = 1712

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 42/136 (30%), Positives = 49/136 (36%), Gaps = 38/136 (27%)

Query: 4   ALGGAGGSGAP--PGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGV 61
           A G  G  G P  PG+ G  G      L    G + RG+ GE     ++G P +    G 
Sbjct: 370 AQGEPGSQGEPGDPGLPGPPG------LSIGDGDQRRGLPGEMGPKGFIGDPGIPALYGG 423

Query: 62  GPCEDKKGGGAGLRPPRLS---------FALLGAKGRKITEVVVGRCPCRPGVKGLADRL 112
            P  D K G  G  PP L          F L GAKGR          P  PG +G     
Sbjct: 424 PPGPDGKRGPPG--PPGLPGPPGPDGFLFGLKGAKGR----AGFPGLPGSPGARG----- 472

Query: 113 KMLGAGVGAPPPGWKG 128
                     P GWKG
Sbjct: 473 ----------PKGWKG 478



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 41/126 (32%), Positives = 52/126 (41%), Gaps = 23/126 (18%)

Query: 6   GGAGGSGAP-----PGVTGRLG-AGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGR 59
           G  G +GAP      G++G  G AG   E      P  +G+ G P      GTP +K  R
Sbjct: 869 GDPGDTGAPGPVGMKGLSGDRGDAGFTGEQGHPGSPGFKGIDGMP------GTPGLKGDR 922

Query: 60  GVGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGV 119
           G  P  D   G  GL+  R  F   G+KG      +       PG+KGLA      G+  
Sbjct: 923 G-SPGMDGFQGMPGLKG-RPGFP--GSKGEAGFFGI-------PGLKGLAGEPGFKGSRG 971

Query: 120 GAPPPG 125
              PPG
Sbjct: 972 DPGPPG 977


>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
          Length = 558

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 116 GAGVGAPPPGWKGLGLATGAGKGLGGST------AAS------GGALWARGGDCRPSPLS 163
           G G G    G    G   G G G GGS       AAS      GG + A GG    +P++
Sbjct: 76  GGGGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPIN 135

Query: 164 MAAG----STRASSWVLESARWRCCSKSCTPRPETSLSCPPSP 202
            + G    S+ +SS    S+     S SC P P   +   PSP
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSP 178


>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
          Length = 706

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 116 GAGVGAPPPGWKGLGLATGAGKGLGGST------AAS------GGALWARGGDCRPSPLS 163
           G G G    G    G   G G G GGS       AAS      GG + A GG    +P++
Sbjct: 76  GGGGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPIN 135

Query: 164 MAAG----STRASSWVLESARWRCCSKSCTPRPETSLSCPPSP 202
            + G    S+ +SS    S+     S SC P P   +   PSP
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSP 178


>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
          Length = 504

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 116 GAGVGAPPPGWKGLGLATGAGKGLGGST------AAS------GGALWARGGDCRPSPLS 163
           G G G    G    G   G G G GGS       AAS      GG + A GG    +P++
Sbjct: 76  GGGGGGSGGGGGSSGNGGGGGGGGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPIN 135

Query: 164 MAAG----STRASSWVLESARWRCCSKSCTPRPETSLSCPPSP 202
            + G    S+ +SS    S+     S SC P P   +   PSP
Sbjct: 136 ASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSP 178


>gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 166

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 27/110 (24%)

Query: 116 GAGVGAPPPGWKGLGLAT------------------GAGKGLGGSTAASGGALWARGGDC 157
           G G     PGW+  GLAT                   AGKG    +A + G LW      
Sbjct: 26  GGGARLEKPGWRAAGLATDWQPPPPPGRVAEHGARPAAGKGRRAVSAGARGVLWL----- 80

Query: 158 RPSPLSMAAGSTRASSWVLESARWRCCSKSC---TPRPETSLSCPPSPEP 204
            P   ++ +  TR          WR  ++ C     R    L  PP P+P
Sbjct: 81  -PKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQPPPPQP 129


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 49/149 (32%), Positives = 56/149 (37%), Gaps = 20/149 (13%)

Query: 6   GGAGGSG--APPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGP 63
           GG  GS    PPG  G  G    +    + G    G LG P      G P +K  RG   
Sbjct: 733 GGEKGSSPVGPPGPPGSPGVNGQK---GIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPG 789

Query: 64  CEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGA-GVGAP 122
           C   + G AG+         LG KG K  E   G     PGV G        GA G+   
Sbjct: 790 CPGAE-GPAGIP------GFLGLKGPKGREGHAG----FPGVPGPPGHSCERGAPGIPGQ 838

Query: 123 P--PGWKGLGLATGAGKGLGGSTAASGGA 149
           P  PG+ G   A G GKG  G     G A
Sbjct: 839 PGLPGYPGSPGAPG-GKGQPGDVGPPGPA 866



 Score = 28.9 bits (63), Expect = 3.6
 Identities = 49/176 (27%), Positives = 62/176 (35%), Gaps = 31/176 (17%)

Query: 2    AAALGGAGGSGAP--PGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGR 59
            A+  G  G  G P  PG  G  GA   + L  + GP  RG  G P      G P      
Sbjct: 1078 ASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQGP--RGSPGRPGPPGSSGPPGCPGDH 1135

Query: 60   GVGPCEDKKG-----GGAGLR-------PPRLS--------FALLGAKGRKITEVVVGRC 99
            G+     + G     G  GL+       PP +           L G KG+K T+   G  
Sbjct: 1136 GMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLH 1195

Query: 100  PCRP----GVKGLADRLKMLGAGVGAPPPGWKGLGLATG--AGKGLGGSTAASGGA 149
               P    G+ GL       G+  G  PPG +G     G     G  G   A+G A
Sbjct: 1196 DVGPPGPVGIPGLKGERGDPGS-PGISPPGPRGKKGPPGPPGSSGPPGPAGATGRA 1250



 Score = 28.5 bits (62), Expect = 4.7
 Identities = 44/155 (28%), Positives = 57/155 (36%), Gaps = 52/155 (33%)

Query: 5   LGGAGGSGAPPGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVG-- 62
           L G+ G+G P G TG               P E G++G P      G P +K   GVG  
Sbjct: 197 LPGSWGAGGPAGPTGY--------------PGEPGLVGPP---GQPGRPGLKGNPGVGVK 239

Query: 63  -----PCEDKKGGGAG----LRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLK 113
                P E  + G  G    + PP   F L   KG K             G+KG+   + 
Sbjct: 240 GQMGDPGEVGQQGSPGPTLLVEPP--DFCLY--KGEK-------------GIKGIPGMVG 282

Query: 114 MLGAGVGAPPPGWKG-LGLATGAGKGLGGSTAASG 147
           + G      PPG KG  G+     KG+ G     G
Sbjct: 283 LPG------PPGRKGESGIGAKGEKGIPGFPGPRG 311



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 41/141 (29%), Positives = 47/141 (33%), Gaps = 25/141 (17%)

Query: 2   AAALGGAGGSGAP--PGVTGRLGAGMYRELVAVTGPEERGVLGEPETGAWLGTPEVKLGR 59
           A  +G  G  G P  PG+ G  G    R   A   P + G  G P      G P    G 
Sbjct: 401 AGMIGPPGPQGFPGLPGLPGEAGIPG-RPDSAPGKPGKPGSPGLPGAPGLQGLP----GS 455

Query: 60  GVGPCEDKKGGGAGLRPPRLSFALLGAKGRKITEVVVGRCPCRPGVKGLADRLKMLGAGV 119
            V  C     G  G++         G KG K  E   G C C PG  G            
Sbjct: 456 SVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNE---GLCACEPGPMG------------ 500

Query: 120 GAPPPGWKGLGLATGAGKGLG 140
              PPG  GL    G+   LG
Sbjct: 501 ---PPGPPGLPGRQGSKGDLG 518


>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
          Length = 1050

 Score = 34.7 bits (78), Expect = 0.066
 Identities = 52/190 (27%), Positives = 65/190 (34%), Gaps = 49/190 (25%)

Query: 27  RELVAVTGPEERGVLGEPETGAWLGTPEVKLGRGVGPCEDKKGGGAGLRPPRLSFALLGA 86
           R+ V +T P  R +    E G + G P   LG G+ P ED KG      P   SF+    
Sbjct: 648 RQGVVMTPPRNRTLPDLSEVGPFHGQP---LGPGLRPGEDPKG------PFGRSFS---- 694

Query: 87  KGRKITEVVVGRCPCRPGVKGLADRLKMLGAGVGAPPPGW------KGLGLATGAGKGLG 140
                                L D L     G  AP PG       K + +A  AG   G
Sbjct: 695 ------------------TSRLTDLLLKAAFGTQAPDPGSTESLQEKPMEIAPSAG--FG 734

Query: 141 GSTAASGGALWARGGDCRPSPLSMAAGSTRASSWVLESARWRCCSKSCTPRPETSL---- 196
           GS      A    GG   PSP+    GS  + S   +  R R  S   T    +S     
Sbjct: 735 GSLHPGARA----GGTSSPSPVVFTVGSPPSGSTPPQGPRTRMFSAGPTGSASSSARHLV 790

Query: 197 --SCPPSPEP 204
              C  +P P
Sbjct: 791 PGPCSEAPAP 800


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.136    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,012,696
Number of Sequences: 37866
Number of extensions: 751263
Number of successful extensions: 4635
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 234
Number of HSP's that attempted gapping in prelim test: 3971
Number of HSP's gapped (non-prelim): 789
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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