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Search of human proteins with 239743823
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743823 PREDICTED: hypothetical protein XP_002344302 [Homo
sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755061 PREDICTED: hypothetical protein XP_002346204 [Homo ... 263 2e-71
gi|239748504 PREDICTED: hypothetical protein XP_002346687 [Homo ... 263 2e-71
gi|239743823 PREDICTED: hypothetical protein XP_002344302 [Homo ... 263 2e-71
gi|239746552 PREDICTED: hypothetical protein XP_002343776 [Homo ... 211 8e-56
gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo ... 56 8e-09
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 42 1e-04
gi|109452587 family with sequence similarity 98, member B isofor... 40 4e-04
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 40 6e-04
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 39 0.001
gi|24497536 homeobox C13 [Homo sapiens] 38 0.002
gi|109255251 loricrin [Homo sapiens] 38 0.002
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 37 0.003
gi|5032007 purine-rich element binding protein A [Homo sapiens] 37 0.003
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 37 0.003
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 37 0.004
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 37 0.005
gi|238859557 regulatory factor X1 [Homo sapiens] 36 0.006
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 36 0.006
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 36 0.008
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 36 0.008
gi|53292629 keratin associated protein 5-11 [Homo sapiens] 36 0.008
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens] 35 0.011
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens] 35 0.011
gi|239749372 PREDICTED: hypothetical protein XP_002347017 [Homo ... 35 0.011
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 35 0.011
gi|239743509 PREDICTED: hypothetical protein XP_002342878 [Homo ... 35 0.011
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 35 0.011
gi|60279697 keratin associated protein 5-7 [Homo sapiens] 35 0.011
gi|51972220 keratin associated protein 5-2 [Homo sapiens] 35 0.011
gi|55956788 nucleolin [Homo sapiens] 35 0.014
>gi|239755061 PREDICTED: hypothetical protein XP_002346204 [Homo
sapiens]
Length = 122
Score = 263 bits (672), Expect = 2e-71
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG 60
MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG
Sbjct: 1 MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG 60
Query: 61 GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLG 120
GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLG
Sbjct: 61 GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLG 120
Query: 121 IR 122
IR
Sbjct: 121 IR 122
>gi|239748504 PREDICTED: hypothetical protein XP_002346687 [Homo
sapiens]
Length = 122
Score = 263 bits (672), Expect = 2e-71
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG 60
MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG
Sbjct: 1 MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG 60
Query: 61 GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLG 120
GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLG
Sbjct: 61 GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLG 120
Query: 121 IR 122
IR
Sbjct: 121 IR 122
>gi|239743823 PREDICTED: hypothetical protein XP_002344302 [Homo
sapiens]
Length = 122
Score = 263 bits (672), Expect = 2e-71
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG 60
MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG
Sbjct: 1 MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG 60
Query: 61 GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLG 120
GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLG
Sbjct: 61 GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLG 120
Query: 121 IR 122
IR
Sbjct: 121 IR 122
>gi|239746552 PREDICTED: hypothetical protein XP_002343776 [Homo
sapiens]
Length = 106
Score = 211 bits (538), Expect = 8e-56
Identities = 96/107 (89%), Positives = 100/107 (93%), Gaps = 1/107 (0%)
Query: 16 MRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGGWEEDYQ 75
MR GEADSPAP PP + +SGCGPFKKWR+R GCGDWGGGAG CGGGCGAAPGGGWEEDYQ
Sbjct: 1 MRAGEADSPAP-PPLTRQSGCGPFKKWRRRRGCGDWGGGAGACGGGCGAAPGGGWEEDYQ 59
Query: 76 RGLRETQGRTHRSPVVRTSVIGLLLGFPVKEELRGVGWAARTPLGIR 122
RGLRETQGRTHRSPVVRTS+IGLLLGFPVKEELRG GWAARTPLGIR
Sbjct: 60 RGLRETQGRTHRSPVVRTSLIGLLLGFPVKEELRGAGWAARTPLGIR 106
>gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo
sapiens]
Length = 94
Score = 55.8 bits (133), Expect = 8e-09
Identities = 43/103 (41%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 1 MVAVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGG 60
MVAVTVTKAAA ASRMRTGEADSPAP PP + +S K G
Sbjct: 1 MVAVTVTKAAARASRMRTGEADSPAP-PPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAA 59
Query: 61 GCGAAPGGGWEEDYQRGLRETQGRTHRSPVVRTSVIGLLLGFP 103
A PG G R T+G R R IG+L P
Sbjct: 60 AAAAQPGAA------GGKRTTRGACGRP---RVGPIGVLSSGP 93
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 41.6 bits (96), Expect = 1e-04
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 30 YSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGGWEEDYQRGLRETQGRTHRSP 89
Y S G K + GD GG GG GGG GAA GGG E+Y + +T SP
Sbjct: 48 YGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENY-----DDPHKTPASP 102
Query: 90 VVRTSVIGLLLG 101
VV + GL+ G
Sbjct: 103 VVH--IRGLIDG 112
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 40.0 bits (92), Expect = 4e-04
Identities = 21/39 (53%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 46 GGCGDWGGGAGGCGGGCGAAPGGGWEEDYQRGLRETQGR 84
GG G WGGG GG GGG G GGGW G QGR
Sbjct: 354 GGRGGWGGGGGGWGGGGGG--GGGWGGGGGGGRGGFQGR 390
Score = 38.9 bits (89), Expect = 0.001
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 17 RTGEADSPAPT-PPYSA-ESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGGW 70
R E + P P PP+ + G G W GG G GGG GG G G GGGW
Sbjct: 311 RPNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGW 366
Score = 33.9 bits (76), Expect = 0.031
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 45 RGGCGDWGGGAGGCGGGCGAAPGGG 69
RGG G GGG GG GGG G GGG
Sbjct: 356 RGGWGGGGGGWGGGGGGGGGWGGGG 380
Score = 29.6 bits (65), Expect = 0.58
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 30 YSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGGW 70
Y G G + RG +GGG GG GGG G GGG+
Sbjct: 393 YGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGG---GGGY 430
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 35 GCGPFKKWRQRGGCGDWG--GGAGG------CGGGCGAAPGGGWEEDYQR 76
G G F+ GG G +G GG GG GGG G GGG Y+R
Sbjct: 383 GRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGGYRR 432
Score = 26.9 bits (58), Expect = 3.8
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 45 RGGCGDWGGGA--GGCGGGCGAAPGGGWEEDY 74
RGG G G G GG GGG G GGG Y
Sbjct: 402 RGGYGGRGYGDPYGGGGGGGGGGGGGGGYRRY 433
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 39.7 bits (91), Expect = 6e-04
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
++ GCG + GGCG GG GGCG GCG G
Sbjct: 173 SKGGCGSCGGCK--GGCGSCGGSKGGCGSGCGGCGSG 207
Score = 38.9 bits (89), Expect = 0.001
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCG 63
++ GCG +GGCG GG GGCG GCG
Sbjct: 95 SKGGCGSCGG--SKGGCGSCGGSKGGCGSGCG 124
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 33 ESGCGPFKKWRQRGGCGDWGGGAGGCG------GGCGAAPGG 68
+ GCG +GGCG GG GGCG GGCG+ GG
Sbjct: 86 KGGCGSCGG--SKGGCGSCGGSKGGCGSCGGSKGGCGSGCGG 125
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 8/35 (22%)
Query: 31 SAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAA 65
S+ GCG GCG G G GGCG GCG +
Sbjct: 12 SSCGGCG--------SGCGGCGSGCGGCGSGCGGS 38
Score = 36.2 bits (82), Expect = 0.006
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 33 ESGCGPFKKWRQRGGCGDWGGGAGGCG------GGCGAAPG 67
+ GCG +GGCG GG GGCG GGCG+ G
Sbjct: 66 KGGCG--SSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGG 104
Score = 35.8 bits (81), Expect = 0.008
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 13/45 (28%)
Query: 29 PYSAESGCGPFKKWRQRGGCGDWGGGAGGCG------GGCGAAPG 67
P + S CG +GGCG GG GGCG GGCG+ G
Sbjct: 57 PTCSCSSCG-------KGGCGSSGGSKGGCGSCGGCKGGCGSCGG 94
Score = 35.8 bits (81), Expect = 0.008
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCG------GGCGAAPG 67
++ GCG + GGCG GG GGCG GGCG+ G
Sbjct: 75 SKGGCGSCGGCK--GGCGSCGGSKGGCGSCGGSKGGCGSCGG 114
Score = 34.7 bits (78), Expect = 0.018
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 35 GCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
GCG CG G G GGCG GCG G
Sbjct: 9 GCG--------SSCGGCGSGCGGCGSGCGGCGSG 34
Score = 34.3 bits (77), Expect = 0.024
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 24 PAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCG------GGCGAAPG 67
PA + + GCG +G CG GG GGCG GGCG+ G
Sbjct: 145 PACSCSSCGKGGCGSCGC--SKGACGSCGGSKGGCGSCGGCKGGCGSCGG 192
Score = 28.5 bits (62), Expect = 1.3
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 46 GGCGDWGG---GAGGCGGGCGAAPGG 68
G CG GG GGCG GCG G
Sbjct: 2 GCCGCSGGCGSSCGGCGSGCGGCGSG 27
Score = 27.7 bits (60), Expect = 2.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGC 62
SGCG CG G GGCG C
Sbjct: 206 SGCGVPVCCCSCSSCGSCAGSKGGCGSSC 234
Score = 27.3 bits (59), Expect = 2.9
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGC 62
SGCG GCG G G GG G C
Sbjct: 19 SGCGGCGS-----GCGGCGSGCGGSGSSC 42
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGG 69
SGCG GCG G G GGCG GCG G G
Sbjct: 19 SGCGGCGS-----GCGGCGSGCGGCGSGCGGCGGCG 49
Score = 37.0 bits (84), Expect = 0.004
Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGG 69
SGCG GGCG GG GGCG GC G G
Sbjct: 26 SGCGGCGSGC--GGCGSGCGGCGGCGSGCAGCGGCG 59
Score = 36.6 bits (83), Expect = 0.005
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 35 GCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
GCG GCG G G GGCG GCG G
Sbjct: 9 GCG--------SGCGGRGSGCGGCGSGCGGCGSG 34
Score = 36.6 bits (83), Expect = 0.005
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
++ GCG +GGCG GG GGC G CG + GG
Sbjct: 115 SKGGCGSCGG--SKGGCGSCGGSKGGC-GSCGGSKGG 148
Score = 33.1 bits (74), Expect = 0.053
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGC 62
SGCG GGCG G GGCG GC
Sbjct: 40 SGCGGC------GGCGSGCAGCGGCGSGC 62
Score = 33.1 bits (74), Expect = 0.053
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 45 RGGCGDWGGGAGGCG------GGCGAAPG 67
+G CG GG GGCG GGCG+ G
Sbjct: 106 KGACGSCGGSKGGCGSCGGSKGGCGSCGG 134
Score = 32.0 bits (71), Expect = 0.12
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGG-GC 62
++ GCG +GGCG GG GGCG GC
Sbjct: 125 SKGGCGSCGG--SKGGCGSCGGSKGGCGSYGC 154
Score = 28.9 bits (63), Expect = 1.00
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 16/49 (32%)
Query: 29 PYSAESGCGPFKKWRQRGGCGDWGGGAGGC---------GGGCGAAPGG 68
P + S CG +GGCG GG GC G CG + GG
Sbjct: 77 PACSCSSCG-------KGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGG 118
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 46 GGCGDWGGGAGGCG------GGCGAAPGG 68
G CG GG GCG GGCG+ GG
Sbjct: 2 GCCGCSGGCGSGCGGRGSGCGGCGSGCGG 30
>gi|24497536 homeobox C13 [Homo sapiens]
Length = 330
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 9/38 (23%)
Query: 31 SAESGCGPFKKWRQRGGCGDWGGGAGGCGGGC-GAAPG 67
+AESG G GG G GGG GG GGGC GA+PG
Sbjct: 23 AAESGIG--------GGGGGGGGGTGGAGGGCSGASPG 52
Score = 29.3 bits (64), Expect = 0.76
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 52 GGGAGGCGGGCGAAPGG 68
GGG GG GGG G A GG
Sbjct: 29 GGGGGGGGGGTGGAGGG 45
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 38.1 bits (87), Expect = 0.002
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 24 PAPTPPYSA--ESGCGPFKKWRQRGGCGDWGGGAGG---CGGGCGAAPGGGW 70
P P PP SG G GGCG +GGG G G GCG + GGG+
Sbjct: 8 PTPQPPVDCVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGY 59
Score = 33.1 bits (74), Expect = 0.053
Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 31 SAESGCG-PFKKWRQRGGCGDW------GGGAGGCGGGCGAA---PGGG 69
S+ SGCG GGCG GGG GGCGGG G + GGG
Sbjct: 46 SSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGG 94
Score = 32.0 bits (71), Expect = 0.12
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 31 SAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGGWEEDYQ 75
S+ G G F G + GG GCGGG G G+ Q
Sbjct: 169 SSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQ 213
Score = 29.3 bits (64), Expect = 0.76
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 31 SAESGCGPFKKWRQRGGCGDW-GGGAGGCGGGCGAAPGGG 69
S+ G G F GC GGG+ G G GC ++ GGG
Sbjct: 96 SSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGG 135
Score = 28.9 bits (63), Expect = 1.00
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 9/33 (27%)
Query: 46 GGCG---------DWGGGAGGCGGGCGAAPGGG 69
GGCG GGG+ G G GC ++ GGG
Sbjct: 78 GGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGG 110
Score = 28.9 bits (63), Expect = 1.00
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 23 SPAPTPPYSAES-------GCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
S AP P Y S G G F GG GGG+ G G GC + GG
Sbjct: 218 SCAPQPSYGGGSSGGGGSGGSGCFSSGGG-GGSSGCGGGSSGIGSGCIISGGG 269
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 47 GCGDWGGGAG------GCGGGCGAAPGGGWEEDYQRGLRETQ 82
GC GGG G G G GCG GG Y + TQ
Sbjct: 175 GCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQ 216
Score = 27.7 bits (60), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 46 GGCGDWGGG-----AGGCGGGCGAAPGGG 69
GG G GGG +GG G GC ++ GGG
Sbjct: 92 GGGGSSGGGSGCFSSGGGGSGCFSSGGGG 120
Score = 27.7 bits (60), Expect = 2.2
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 31 SAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGG 69
S G G F GG G GGG+G G G + GGG
Sbjct: 106 SGGGGSGCFSS----GGGGSSGGGSGCFSSGGGGSSGGG 140
Score = 27.7 bits (60), Expect = 2.2
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 47 GC-GDWGGGAGGCGGGCGAAPGGGW 70
GC GGG+ G G GC ++ GGG+
Sbjct: 127 GCFSSGGGGSSGGGSGCFSSGGGGF 151
Score = 25.8 bits (55), Expect = 8.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 46 GGCGDWGGGAGGCGGGCGAAPGGG 69
GG G GG GG GG + GGG
Sbjct: 72 GGGGGIGGCGGGSGGSVKYSGGGG 95
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 9 AAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
AA P S + A S T ++AE G + G CG GGG GG GGG G GG
Sbjct: 419 AAGPGSGSPSAAASSSWHTL-FTAEEG-------QLYGPCGGGGGGGGGGGGGGGGGGGG 470
Query: 69 GWEE 72
G E
Sbjct: 471 GGGE 474
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 37.4 bits (85), Expect = 0.003
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 46 GGCGDWGGGAGGCGGGCGAAPGG 68
GG G GGG GG GGG G APGG
Sbjct: 31 GGGGGGGGGGGGSGGGGGGAPGG 53
Score = 30.8 bits (68), Expect = 0.26
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 47 GCGDWGGGAGGCGGGCGAAPGGG 69
G G GG GG GGG G + GGG
Sbjct: 25 GSGSGSGGGGGGGGGGGGSGGGG 47
Score = 30.4 bits (67), Expect = 0.34
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 47 GCGDWGGGAGGCGGGCGAAPGGG 69
G G GGG GG GGG GGG
Sbjct: 27 GSGSGGGGGGGGGGGGSGGGGGG 49
Score = 27.3 bits (59), Expect = 2.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 46 GGCGDWGGGAGGCGGGCGAAPGGG 69
G G G G+G GGG G GGG
Sbjct: 19 GSLGHPGSGSGSGGGGGGGGGGGG 42
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 37.4 bits (85), Expect = 0.003
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
SGCG GCG G G GGCG GCG G
Sbjct: 12 SGCGGCGS-----GCGGCGSGCGGCGSGCGGCGSG 41
Score = 37.0 bits (84), Expect = 0.004
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 35 GCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
GCG GCG G G GGCG GCG G
Sbjct: 9 GCG--------SGCGGCGSGCGGCGSGCGGCGSG 34
Score = 36.6 bits (83), Expect = 0.005
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
++ GCG +GGCG GG GGC G CG + GG
Sbjct: 97 SKGGCGSCGG--SKGGCGSCGGSKGGC-GSCGGSKGG 130
Score = 36.6 bits (83), Expect = 0.005
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
++ GCG +GGCG GG GGC G CG + GG
Sbjct: 157 SKGGCGSCGG--SKGGCGSCGGSKGGC-GSCGGSKGG 190
Score = 35.8 bits (81), Expect = 0.008
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGCG 63
SGCG GCG G G GGCG GCG
Sbjct: 19 SGCGGCGS-----GCGGCGSGCGGCGSGCG 43
Score = 33.5 bits (75), Expect = 0.040
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGC------GGGCGAAPG 67
++ GCG +GGCG GG GGC GGCG+ G
Sbjct: 107 SKGGCGSCGG--SKGGCGSCGGSKGGCVSCGGSKGGCGSCGG 146
Score = 33.1 bits (74), Expect = 0.053
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
++ GCG +GGC GG GGC G CG + GG
Sbjct: 117 SKGGCGSCGG--SKGGCVSCGGSKGGC-GSCGGSKGG 150
Score = 33.1 bits (74), Expect = 0.053
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCG------GGCGAAPG 67
++ GCG +GGC GG GGCG GGCG+ G
Sbjct: 137 SKGGCGSCGG--SKGGCVSCGGSKGGCGSCGGSKGGCGSCGG 176
Score = 32.3 bits (72), Expect = 0.090
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAA 65
++ GCG +GGCG GG GGC G CG +
Sbjct: 167 SKGGCGSCGG--SKGGCGSCGGSKGGC-GSCGCS 197
Score = 32.0 bits (71), Expect = 0.12
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 45 RGGCGDWGGGAGGCG------GGCGAAPG 67
+GGC GG GGCG GGCG+ G
Sbjct: 88 KGGCVSCGGSKGGCGSCGGSKGGCGSCGG 116
Score = 31.2 bits (69), Expect = 0.20
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGC 62
SGCG GCG G G GGCG C
Sbjct: 26 SGCGGCGS-----GCGGCGSGCGGCGSSC 49
Score = 30.8 bits (68), Expect = 0.26
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 46 GGCGDWGG---GAGGCGGGCGAAPGG 68
G CG GG G GGCG GCG G
Sbjct: 2 GCCGCSGGCGSGCGGCGSGCGGCGSG 27
Score = 29.3 bits (64), Expect = 0.76
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 36 CGPFKKWRQRGGCGDWGGGAGGCGG------GCGAAPGG 68
C P G CG GG G CGG CG + GG
Sbjct: 62 CVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGG 100
Score = 28.1 bits (61), Expect = 1.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 45 RGGCGDWGGGAGGC------GGGCGAAPG 67
+GG G GG GGC GGCG+ G
Sbjct: 78 KGGYGSCGGSKGGCVSCGGSKGGCGSCGG 106
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 37.0 bits (84), Expect = 0.004
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 12 PASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGG 69
P ++++G A+S + SA + P +K + GG G G G GG GG A GGG
Sbjct: 130 PRKKVKSGNANSSS-----SAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGGGG 182
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 36.6 bits (83), Expect = 0.005
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCG------GGCGAAPG 67
++ GCG +GGCG GG GGCG GGCG+ G
Sbjct: 80 SKGGCGSCGG--SKGGCGSCGGSKGGCGSCGGSKGGCGSCGG 119
Score = 36.6 bits (83), Expect = 0.005
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCG------GGCGAAPG 67
++ GCG +GGCG GG GGCG GGCG+ G
Sbjct: 90 SKGGCGSCGG--SKGGCGSCGGSKGGCGSCGGSKGGCGSCGG 129
Score = 36.6 bits (83), Expect = 0.005
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
++ GCG +GGCG GG GGC G CG + GG
Sbjct: 100 SKGGCGSCGG--SKGGCGSCGGSKGGC-GSCGGSKGG 133
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 35 GCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
GCG GCG G G GGCG GCG G
Sbjct: 9 GCG--------SGCGGCGSGCGGCGSGCGGYGSG 34
Score = 32.7 bits (73), Expect = 0.069
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGC 62
SGCG GCG +G G GGCG C
Sbjct: 19 SGCGGCGS-----GCGGYGSGCGGCGSSC 42
Score = 32.7 bits (73), Expect = 0.069
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 45 RGGCGDWGGGAGGCG------GGCGAAPG 67
+G CG GG GGCG GGCG+ G
Sbjct: 71 KGDCGSCGGSKGGCGSCGGSKGGCGSCGG 99
Score = 32.3 bits (72), Expect = 0.090
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAA 65
++ GCG +GGCG GG GGC G CG +
Sbjct: 110 SKGGCGSCGG--SKGGCGSCGGSKGGC-GSCGCS 140
Score = 31.6 bits (70), Expect = 0.15
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGCG 63
SGCG GCG G G GG G GCG
Sbjct: 12 SGCGGCGS-----GCGGCGSGCGGYGSGCG 36
Score = 30.8 bits (68), Expect = 0.26
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 46 GGCGDWGG---GAGGCGGGCGAAPGG 68
G CG GG G GGCG GCG G
Sbjct: 2 GCCGCSGGCGSGCGGCGSGCGGCGSG 27
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 36 CGPFKKWRQRGGCGDWGGGAGGCG---GGCGAAPG 67
C P G CG G G CG GGCG+ G
Sbjct: 55 CVPACSCSSCGSCGGSKGDCGSCGGSKGGCGSCGG 89
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 3 AVTVTKAAAPASRMRTGEADSPAPTPPY---------SAESGCGPFKKWRQRGGCGDWGG 53
A T T+ + PA+ + S P Y S +G G G G GG
Sbjct: 335 AGTATQVSTPATSQAVASSGS---MPMYVSGSQVVASSTSTGAGASNSSGGGGSGGGGGG 391
Query: 54 GAGGCGGGCGAAPGGG 69
G GG GGG G+ GGG
Sbjct: 392 GGGGGGGGSGSTGGGG 407
Score = 27.3 bits (59), Expect = 2.9
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 46 GGCGDWGGGAGGCGGGCGAAPGGG 69
GG G GGG GG G G G G
Sbjct: 388 GGGGGGGGGGGGSGSTGGGGSGAG 411
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 10 AAPASRMRT--GEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPG 67
AAPA+ + G P PP ES + G G GG GG GGG G G
Sbjct: 126 AAPAATLAALGGRRPGPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREG 185
Query: 68 GGWEEDYQRGLR 79
G + RG R
Sbjct: 186 GAPQPPPPRGWR 197
Score = 29.3 bits (64), Expect = 0.76
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 15/59 (25%)
Query: 18 TGEADSPAPTPPYSAESGCGPFKKWR-------QRGGCGDWGGGAGGCGGGCGAAPGGG 69
+GE + AP PP P + WR QRGG G G G PG G
Sbjct: 180 SGEREGGAPQPP--------PPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTG 230
Score = 27.3 bits (59), Expect = 2.9
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 19 GEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGGWEE 72
GE SP+P+ S+ +G P G G G+G GGG G G W+E
Sbjct: 211 GEGASPSPS---SSSAGKTP--------GTGSRNSGSGVAGGGSGGG-GSYWKE 252
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 35.8 bits (81), Expect = 0.008
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 11 APASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGG 69
+P++ ++ SPA +A + RGG GG GG GGG G+ GGG
Sbjct: 442 SPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGG 500
Score = 33.5 bits (75), Expect = 0.040
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 9 AAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
AAA A+ A S S G G GG GGG GG GGG G + GG
Sbjct: 458 AAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGS-----GGGSGSGGGGGGAGGGGGGSSGG 512
Query: 69 G 69
G
Sbjct: 513 G 513
Score = 30.8 bits (68), Expect = 0.26
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 3 AVTVTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGC 62
A AAA ++ R G + S SG G GG G GGG G GGG
Sbjct: 462 AAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGG-------GGGGAGGGGGGSSGGGS 514
Query: 63 GAAPG 67
G A G
Sbjct: 515 GTAGG 519
Score = 30.4 bits (67), Expect = 0.34
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 6 VTKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAG--GCGGGCG 63
V+ +A P S A + A +A + + G G GG G G GGG G
Sbjct: 441 VSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGG 500
Query: 64 AAPGGG 69
A GGG
Sbjct: 501 GAGGGG 506
>gi|154091020 leucine-rich repeats and calponin homology (CH)
domain containing 2 [Homo sapiens]
Length = 765
Score = 35.8 bits (81), Expect = 0.008
Identities = 20/39 (51%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 31 SAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGGG 69
S GCG GGCG GGG GG GGG G GGG
Sbjct: 11 SGGGGCGG---GGSSGGCGTAGGGGGGAGGGGGG--GGG 44
Score = 34.3 bits (77), Expect = 0.024
Identities = 17/28 (60%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 44 QRGGCGDWGGGAGGCG--GGCGAAPGGG 69
Q GG GGG GG G GGCG A GGG
Sbjct: 5 QGGGGNSGGGGCGGGGSSGGCGTAGGGG 32
Score = 26.2 bits (56), Expect = 6.5
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAP 66
+ GCG GG G GG GG GGG P
Sbjct: 21 SSGGCGT------AGGGGGGAGGGGGGGGGTLVVP 49
>gi|53292629 keratin associated protein 5-11 [Homo sapiens]
Length = 156
Score = 35.8 bits (81), Expect = 0.008
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 8/29 (27%)
Query: 35 GCGPFKKWRQRGGCGDWGGGAGGCGGGCG 63
GCG GCG G G+GGCG GCG
Sbjct: 9 GCG--------SGCGGCGSGSGGCGSGCG 29
Score = 33.1 bits (74), Expect = 0.053
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 46 GGCGDWGGGAGGCGGGCGAAPGG 68
GGCG GG G GGCG+ GG
Sbjct: 8 GGCGSGCGGCGSGSGGCGSGCGG 30
Score = 30.4 bits (67), Expect = 0.34
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 48 CGDWGGGAGGCGGGCGAAPGG 68
CG GG GGC G CG++ GG
Sbjct: 57 CGSCGGSKGGC-GSCGSSKGG 76
Score = 30.0 bits (66), Expect = 0.45
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 46 GGCGDWGGGAGGCGGGCGAA 65
GGCG GG G GGCG++
Sbjct: 15 GGCGSGSGGCGSGCGGCGSS 34
Score = 29.3 bits (64), Expect = 0.76
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 36 CGPFKKWRQRGGCGDWGGGAGGCG---GGCGA 64
C P G CG GG G CG GGCG+
Sbjct: 48 CVPACSCSSCGSCGGSKGGCGSCGSSKGGCGS 79
Score = 28.9 bits (63), Expect = 1.00
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 45 RGGCGDWGGGAGGCGGGCGAA 65
+GGCG G GGC G CG +
Sbjct: 64 KGGCGSCGSSKGGC-GSCGCS 83
Score = 27.7 bits (60), Expect = 2.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 47 GCGDWGGGAGGCGGGCGAAPGG 68
GC GG G GGCG+ GG
Sbjct: 2 GCCGCSGGCGSGCGGCGSGSGG 23
Score = 27.3 bits (59), Expect = 2.9
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGC 62
SGCG G G G G GGCG C
Sbjct: 12 SGCGGCGS-----GSGGCGSGCGGCGSSC 35
>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 35.4 bits (80), Expect = 0.011
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 17 RTGEADSPAPTPPYSAESGCG-PFKKWRQRGGCGDWGGGAGG--CGGGCGAAPGG 68
RTG A +P P +G G P WR+ GD G G G GG CGAAPGG
Sbjct: 30 RTGRAPPQSPPP-----AGPGAPGAPWRR----GDEGPGPAGGEAGGPCGAAPGG 75
>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 35.4 bits (80), Expect = 0.011
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 17 RTGEADSPAPTPPYSAESGCG-PFKKWRQRGGCGDWGGGAGG--CGGGCGAAPGG 68
RTG A +P P +G G P WR+ GD G G G GG CGAAPGG
Sbjct: 30 RTGRAPPQSPPP-----AGPGAPGAPWRR----GDEGPGPAGGEAGGPCGAAPGG 75
>gi|239749372 PREDICTED: hypothetical protein XP_002347017 [Homo
sapiens]
Length = 212
Score = 35.4 bits (80), Expect = 0.011
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 7 TKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAP 66
T A A SR+ G+A P PP G PF Q G G GGG G G + P
Sbjct: 136 TPAEAKKSRLGRGQA---TPPPPRDPRPGTAPF----QAVG-GTLGGGGTGRRGRGFSVP 187
Query: 67 GGGWEEDYQRGLRET 81
GW + +R + T
Sbjct: 188 RKGWRRERERAFQAT 202
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 35.4 bits (80), Expect = 0.011
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 17 RTGEADSPAPTPPYSAESGCG-PFKKWRQRGGCGDWGGGAGG--CGGGCGAAPGG 68
RTG A +P P +G G P WR+ GD G G G GG CGAAPGG
Sbjct: 30 RTGRAPPQSPPP-----AGPGAPGAPWRR----GDEGPGPAGGEAGGPCGAAPGG 75
>gi|239743509 PREDICTED: hypothetical protein XP_002342878 [Homo
sapiens]
Length = 212
Score = 35.4 bits (80), Expect = 0.011
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 7 TKAAAPASRMRTGEADSPAPTPPYSAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAP 66
T A A SR+ G+A P PP G PF Q G G GGG G G + P
Sbjct: 136 TPAEAKKSRLGRGQA---TPPPPRDPRPGTAPF----QAVG-GTLGGGGTGRRGRGFSVP 187
Query: 67 GGGWEEDYQRGLRET 81
GW + +R + T
Sbjct: 188 RKGWRRERERAFQAT 202
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 35.4 bits (80), Expect = 0.011
Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 3 AVTVTKAAAPASRMRTGEADSPAPTPPYSAESGC--------------GPFKKWRQRGGC 48
A + AAA A+ + A + AP SA C RGG
Sbjct: 356 AASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGG 415
Query: 49 GDWGGGAGGCGGGCGAAPGGG 69
G GGG GG GGG GA GGG
Sbjct: 416 GGGGGGGGGGGGGAGA--GGG 434
Score = 31.6 bits (70), Expect = 0.15
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 3 AVTVTKAAAPASRMRTGEADSPAPTPP-----YSAESGCGPFKKWRQRGGCGDWGGGAGG 57
A AAA +S G S P +S++S G GGG GG
Sbjct: 361 AAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGG 420
Query: 58 CGGGCGAAPGGGWEEDY 74
GGG G G G D+
Sbjct: 421 GGGGGGGGAGAGGGSDF 437
Score = 27.3 bits (59), Expect = 2.9
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 43 RQRGGCGDWGGGAGGCGGGCGAAPGGG 69
R GG G GGG GG G G G G
Sbjct: 412 RGGGGGGGGGGGGGGGGAGAGGGSDFG 438
>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
Length = 165
Score = 35.4 bits (80), Expect = 0.011
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Query: 35 GCGPFKKWRQRGGCGDWGGGAGGCGGGCG 63
GCG GCG G G GGCG GCG
Sbjct: 9 GCG--------SGCGGCGSGCGGCGSGCG 29
Score = 35.4 bits (80), Expect = 0.011
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 45 RGGCGDWGGGAGGCGGGCGAAPGG 68
+GGCG GG GGC G CG + GG
Sbjct: 64 KGGCGSCGGSKGGC-GSCGGSKGG 86
Score = 32.3 bits (72), Expect = 0.090
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAA 65
++ GCG +GGCG GG GGC G CG +
Sbjct: 63 SKGGCGSCGG--SKGGCGSCGGSKGGC-GSCGCS 93
Score = 31.2 bits (69), Expect = 0.20
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGC 62
SGCG GCG G G GGCG C
Sbjct: 12 SGCGGCGS-----GCGGCGSGCGGCGSSC 35
Score = 30.8 bits (68), Expect = 0.26
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 36 CGPFKKWRQRGGCGDWGGGAGGCG---GGCGAAPG 67
C P G CG GG G CG GGCG+ G
Sbjct: 48 CVPACSCSSCGSCGGSKGGCGSCGGSKGGCGSCGG 82
Score = 29.6 bits (65), Expect = 0.58
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 47 GCGDWGGGAGGCGGGCGAAPGG 68
GCG GG G GGCG+ GG
Sbjct: 9 GCGSGCGGCGSGCGGCGSGCGG 30
Score = 28.9 bits (63), Expect = 1.00
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 46 GGCGDWGGGAGGCGGGCGAA 65
GGCG GG G GGCG++
Sbjct: 15 GGCGSGCGGCGSGCGGCGSS 34
Score = 27.7 bits (60), Expect = 2.2
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 46 GGCGDWGG---GAGGCGGGCGAAPGG 68
G CG G G GGCG GCG G
Sbjct: 2 GCCGCSEGCGSGCGGCGSGCGGCGSG 27
>gi|51972220 keratin associated protein 5-2 [Homo sapiens]
Length = 177
Score = 35.4 bits (80), Expect = 0.011
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 31 SAESGCGPFKKWRQRGGCGDWGGGAGGCGGGCG 63
S+ GCG GCG G G GGCG GCG
Sbjct: 19 SSCGGCG--------SGCGGCGSGRGGCGSGCG 43
Score = 35.4 bits (80), Expect = 0.011
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 45 RGGCGDWGGGAGGCGGGCGAAPGG 68
+GGCG GG GGC G CG + GG
Sbjct: 85 KGGCGSCGGSKGGC-GSCGGSKGG 107
Score = 34.7 bits (78), Expect = 0.018
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 35 GCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
GCG GCG G GGCG GCG G
Sbjct: 9 GCG--------SGCGGCGSSCGGCGSGCGGCGSG 34
Score = 33.5 bits (75), Expect = 0.040
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAAPGG 68
SGCG GGCG GG G GGCG+ GG
Sbjct: 12 SGCGGCGS--SCGGCGSGCGGCGSGRGGCGSGCGG 44
Score = 32.3 bits (72), Expect = 0.090
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 32 AESGCGPFKKWRQRGGCGDWGGGAGGCGGGCGAA 65
++ GCG +GGCG GG GGC G CG +
Sbjct: 84 SKGGCGSCGG--SKGGCGSCGGSKGGC-GSCGCS 114
Score = 30.4 bits (67), Expect = 0.34
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 34 SGCGPFKKWRQRGGCGDWGGGAGGCGGGCGA 64
SGCG R GGCG GG GGCG+
Sbjct: 26 SGCGGCGSGR--GGCGSGCGGCSSSCGGCGS 54
Score = 30.4 bits (67), Expect = 0.34
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 46 GGCGDWGGGAGGCGGGCGAAPGG 68
GGCG GG G GGC ++ GG
Sbjct: 29 GGCGSGRGGCGSGCGGCSSSCGG 51
Score = 30.0 bits (66), Expect = 0.45
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 46 GGCGDWGGGAGGCG---GGCGAAPG 67
G CG GG G CG GGCG+ G
Sbjct: 79 GSCGGSKGGCGSCGGSKGGCGSCGG 103
Score = 25.8 bits (55), Expect = 8.4
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 36 CGPFKKWRQRGGCGDWG--GGAGGCGGGCGAAPGG 68
C P W C G GG+ G G CG + GG
Sbjct: 63 CKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGG 97
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 35.0 bits (79), Expect = 0.014
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 9 AAAPASRMRTGEADSPAPTPPYSAESGCGPFK-KWRQRGGCGDWGGGAGGCGGGCGAAPG 67
A A M GE D T ++ G G F + RGG G GGG GG GG G G
Sbjct: 623 AKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRG 682
Query: 68 G 68
G
Sbjct: 683 G 683
Score = 27.3 bits (59), Expect = 2.9
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 43 RQRGGCGDWGGGAGGCGGGCGAAPGG 68
R RGG G GG GG GGG P G
Sbjct: 679 RGRGGFGGRGGFRGGRGGGGDHKPQG 704
Score = 26.6 bits (57), Expect = 4.9
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 45 RGGCGDWG-GGAGGCGGGCGAAPGGG 69
RGG G G GG GG GG G GGG
Sbjct: 673 RGGFGGRGRGGFGGRGGFRGGRGGGG 698
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,608,436
Number of Sequences: 37866
Number of extensions: 402854
Number of successful extensions: 7295
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 258
Number of HSP's that attempted gapping in prelim test: 2886
Number of HSP's gapped (non-prelim): 2753
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.