Guide to the Human Genome
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Name: LOC100289342 Sequence: fasta or formatted (110aa) NCBI GI: 239743644
Description:

PREDICTED: hypothetical protein XP_002342912

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            38.2         42           4
 C cysteine            1.8          2           1
 D aspartate          11.8         13           2
 E glutamate           0.0          0           0
 F phenylalanine       3.6          4           1
 G glycine             3.6          4           1
 H histidine           1.8          2           1
 I isoleucine          0.0          0           0
 K lysine              7.3          8           1
 L leucine             1.8          2           1
 M methionine          7.3          8           2
 N asparagine          1.8          2           1
 P proline             0.0          0           0
 Q glutamine           1.8          2           1
 R arginine            0.0          0           0
 S serine              3.6          4           1
 T threonine           6.4          7           2
 V valine              8.2          9           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342912 
LOC727872             0.882   PREDICTED: hypothetical protein 
AMOT                  0.054   angiomotin isoform 2 
AMOT                  0.054   angiomotin isoform 1 
FAM48B1               0.054   hypothetical protein LOC100130302 
LOC100289830          0.048   PREDICTED: hypothetical protein XP_002347519 
MAP4                  0.048   microtubule-associated protein 4 isoform 4 
MAP4                  0.048   microtubule-associated protein 4 isoform 1 
MAZ                   0.038   MYC-associated zinc finger protein isoform 2 
MAZ                   0.038   MYC-associated zinc finger protein isoform 1 
LOC342346             0.032   hypothetical protein LOC342346 
RCOR1                 0.032   REST corepressor 1 
HOXA13                0.032   homeobox A13 
FOXD1                 0.027   forkhead box D1 
HCFC1                 0.027   host cell factor 1 
MARCKS                0.027   myristoylated alanine-rich protein kinase C substra...
COL15A1               0.027   alpha 1 type XV collagen precursor 
TLN2                  0.027   talin 2 
SP8                   0.016   Sp8 transcription factor isoform 1 
SP8                   0.016   Sp8 transcription factor isoform 2 
LOC100130667          0.016   PREDICTED: hypothetical protein 
LOC100130667          0.016   PREDICTED: hypothetical protein 
LOC100130667          0.016   PREDICTED: hypothetical protein 
MAP1A                 0.016   microtubule-associated protein 1A 
TTN                   0.016   titin isoform novex-3 
TTN                   0.016   titin isoform N2-A 
TTN                   0.016   titin isoform novex-2 
TTN                   0.016   titin isoform novex-1 
TTN                   0.016   titin isoform N2-B 
LBXCOR1               0.016   LBXCOR1 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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