Guide to the Human Genome
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Name: LOC100130667 Sequence: fasta or formatted (404aa) NCBI GI: 169161152
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {404aa} PREDICTED: hypothetical protein
alt mRNA {404aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.6         71           3
 C cysteine            0.5          2           1
 D aspartate           2.0          8           1
 E glutamate           5.9         24           2
 F phenylalanine       1.5          6           2
 G glycine             6.7         27           2
 H histidine           3.0         12           2
 I isoleucine          1.5          6           1
 K lysine              2.7         11           2
 L leucine            14.4         58           2
 M methionine          0.7          3           1
 N asparagine          1.2          5           1
 P proline             9.4         38           2
 Q glutamine           6.2         25           1
 R arginine            6.7         27           1
 S serine              5.0         20           2
 T threonine           3.5         14           1
 V valine             11.1         45           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130667          1.000   PREDICTED: hypothetical protein 
LOC100130667          1.000   PREDICTED: hypothetical protein 
LOC100130262          0.102   PREDICTED: hypothetical protein 
LOC100130262          0.102   PREDICTED: hypothetical protein 
LOC100130262          0.102   PREDICTED: hypothetical protein 
LOC100289978          0.076   PREDICTED: hypothetical protein XP_002348035 
LOC100290090          0.071   PREDICTED: hypothetical protein XP_002348037 
LOC100288446          0.071   PREDICTED: hypothetical protein XP_002343740 
LOC100291846          0.058   PREDICTED: hypothetical protein XP_002345270 
LOC100293166          0.046   PREDICTED: similar to ribosomal protein L36a 
LOC100290185          0.046   PREDICTED: hypothetical protein XP_002346982 
LOC100288541          0.046   PREDICTED: hypothetical protein XP_002342844 
LOC100288541          0.046   PREDICTED: similar to ribosomal protein L36a 
LOC100130710          0.043   PREDICTED: hypothetical protein 
LOC100130710          0.043   PREDICTED: hypothetical protein 
LOC100130710          0.043   PREDICTED: hypothetical protein 
TCERG1                0.021   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.021   transcription elongation regulator 1 isoform 1 [Homo...
LOC100294029          0.020   PREDICTED: hypothetical protein 
LOC100128719          0.020   PREDICTED: hypothetical protein, partial 
LOC100128719          0.020   PREDICTED: hypothetical protein, partial 
PRKD2                 0.020   protein kinase D2 isoform A 
PRKD2                 0.020   protein kinase D2 isoform A 
PRKD2                 0.020   protein kinase D2 isoform A 
LOC100129081          0.020   PREDICTED: hypothetical protein 
LOC100129081          0.020   PREDICTED: hypothetical protein 
LOC100129081          0.020   PREDICTED: hypothetical protein 
RBM26                 0.019   RNA binding motif protein 26 
CROCC                 0.019   ciliary rootlet coiled-coil 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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