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Search of human proteins with 239743404
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo
sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754772 PREDICTED: hypothetical protein [Homo sapiens] 201 8e-53
gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo ... 201 8e-53
gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo ... 201 8e-53
gi|239509103 PREDICTED: hypothetical protein [Homo sapiens] 201 8e-53
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 39 9e-04
gi|83035136 F-box protein 31 [Homo sapiens] 38 0.002
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 38 0.002
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ... 37 0.003
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ... 37 0.003
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [H... 37 0.003
gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [H... 37 0.003
gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... 37 0.003
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 37 0.003
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H... 37 0.004
gi|239754838 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|239749375 PREDICTED: hypothetical protein XP_002347018 [Homo ... 37 0.004
gi|239743512 PREDICTED: hypothetical protein XP_002342879 [Homo ... 37 0.004
gi|12056465 fibrillarin [Homo sapiens] 37 0.004
gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo ... 36 0.006
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 36 0.006
gi|4503119 cancer/testis antigen 1B [Homo sapiens] 36 0.008
gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens] 36 0.008
gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens] 36 0.008
gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens] 36 0.008
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 36 0.008
>gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 201 bits (512), Expect = 8e-53
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG
Sbjct: 1 MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR
Sbjct: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
>gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo
sapiens]
Length = 95
Score = 201 bits (512), Expect = 8e-53
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG
Sbjct: 1 MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR
Sbjct: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
>gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo
sapiens]
Length = 95
Score = 201 bits (512), Expect = 8e-53
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG
Sbjct: 1 MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR
Sbjct: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
>gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 201 bits (512), Expect = 8e-53
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG
Sbjct: 1 MYRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR
Sbjct: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 38.9 bits (89), Expect = 9e-04
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 3 RVLPRSQASRRERRPRQRQHRGRERR-----TRRDAQGPRGGGPGFRAGGR---RTPDKG 54
R+LPR++ +R RR QRQ +RR + A G GGG + GG R P +
Sbjct: 4 RLLPRAE--KRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRL 61
Query: 55 RPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGEGGTDP 92
+ + G GGG G A+ G GE DP
Sbjct: 62 KTDNAGDQHGGGGGGGGGAGAA----GGGGGGENYDDP 95
>gi|83035136 F-box protein 31 [Homo sapiens]
Length = 539
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/68 (33%), Positives = 29/68 (42%)
Query: 2 YRVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGV 61
+ L R RER +++Q G E R QGPR P P KG G+PG
Sbjct: 363 FNELSRIVLEVRERVRQEQQEGGHEAGEGRGRQGPRESQPSPAQPRAEAPSKGPDGTPGE 422
Query: 62 PGGGGAEA 69
GG +A
Sbjct: 423 DGGEPGDA 430
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 7 RSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRA---GGRRTPDKGRPGSPGVPG 63
RS+ R+R+ R + R R RR R + RGGG G PD G PG G G
Sbjct: 280 RSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDG 339
Query: 64 GGGAEAWG 71
G E G
Sbjct: 340 PDGPEEKG 347
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 7 RSQASRRER-------RPRQRQHRGRERRTRRDAQGPRGGGPG 42
RS S RER R R R+H+ ER + R RGGG G
Sbjct: 356 RSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGG 398
Score = 29.3 bits (64), Expect = 0.71
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 9 QASRRERRPRQRQHRG-RERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGA 67
+ R R R+R HR RERR RD R G R ++GR + G GG
Sbjct: 345 EKGRDRDRERRRSHRSERERRRDRDRDRDRDRE---HKRGERGSERGRDEARGGGGGQDN 401
Query: 68 EAWGPRAASRTRLAGSRDGEGGTDP 92
G SR S G+G P
Sbjct: 402 GLEGLGNDSRDMYMESEGGDGYLAP 426
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 37.7 bits (86), Expect = 0.002
Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 13 RERRPRQRQHRGRERRTR-RDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWG 71
R R P + + RE R R R A+ P GPG + R+ GRPG PG GG A A
Sbjct: 219 RVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPG-PGFHGGEKAAA-- 275
Query: 72 PRAASRTRLAGSRDGEGGTDPSA 94
PRA G GG +P A
Sbjct: 276 PRAPG---------GGGGRNPGA 289
Score = 28.9 bits (63), Expect = 0.93
Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 5 LPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGG 64
L R+ SR RP H G + A PR G GG R P G G P
Sbjct: 251 LSRASRSRAAGRPGPGFHGGEK------AAAPRAPG----GGGGRNP--GALGRAAPPSR 298
Query: 65 GGAEAWGPRAASRTRL-AGSRDGEGGTDPSA 94
+AWG + L G D G + P A
Sbjct: 299 ARQDAWGLSGCATVGLRRGDCDRAGSSQPPA 329
>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 37.4 bits (85), Expect = 0.003
Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82
R RR RR+AQG R GGG AG + RP PG G A PRAA+ G
Sbjct: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
Query: 83 SRDGEG 88
DG+G
Sbjct: 89 PTDGKG 94
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 5 LPRSQASRRERRPRQRQHRGRERRTRRDAQG--------PRGGGPGFRAGGRRTPD--KG 54
LPRS + E +R+ G ERR R QG P G RAG RR +
Sbjct: 233 LPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRK 292
Query: 55 RPGSPGVPGGGGAEAWGPRAASRTRLAGS 83
R G PGV GA+ G R R GS
Sbjct: 293 RGGGPGVSPREGAQGEGVRGGVTPRARGS 321
>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
sapiens]
Length = 215
Score = 37.4 bits (85), Expect = 0.003
Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82
R RR RR+AQG R GGG AG + RP PG G A PRAA+ G
Sbjct: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
Query: 83 SRDGEG 88
DG+G
Sbjct: 89 PTDGKG 94
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 5 LPRSQASRRERRPRQRQHRGRERRTRRDAQG--------PRGGGPGFRAGGRRTPD--KG 54
LPRS + E +R+ G ERR R QG P G RAG RR +
Sbjct: 327 LPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRK 386
Query: 55 RPGSPGVPGGGGAEAWGPRAASRTRLAGS 83
R G PGV GA+ G R R GS
Sbjct: 387 RGGGPGVSPREGAQGEGVRGGVTPRARGS 415
>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
sapiens]
Length = 215
Score = 37.4 bits (85), Expect = 0.003
Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 25 RERRTRRDAQGPR--GGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAG 82
R RR RR+AQG R GGG AG + RP PG G A PRAA+ G
Sbjct: 38 RVRRGRREAQGARWPGGGAALLAG------RLRPRRRWAPGAGPVAACRPRAAA---AGG 88
Query: 83 SRDGEG 88
DG+G
Sbjct: 89 PTDGKG 94
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 5 LPRSQASRRERRPRQRQHRGRERRTRRDAQG--------PRGGGPGFRAGGRRTPD--KG 54
LPRS + E +R+ G ERR R QG P G RAG RR +
Sbjct: 327 LPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAARQWRK 386
Query: 55 RPGSPGVPGGGGAEAWGPRAASRTRLAGS 83
R G PGV GA+ G R R GS
Sbjct: 387 RGGGPGVSPREGAQGEGVRGGVTPRARGS 415
>gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [Homo
sapiens]
Length = 167
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 3 RVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGR 55
R L R RR ++ R R R RERR+R +G GGG G GG R D+ R
Sbjct: 106 RELRRELYGRRRKKHRSRS-RSRERRSRSRDRGRGGGGGGGGGGGGRERDRRR 157
Score = 29.6 bits (65), Expect = 0.54
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 6 PRSQASRRERRPRQRQ-HRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGG 64
P S+ RRE R+R+ HR R R R + R+ D+GR G G GG
Sbjct: 103 PISRELRRELYGRRRKKHRSRSRSRERRS---------------RSRDRGRGGGGGGGGG 147
Query: 65 GGAEAWGPRAASRTRLAGSR 84
GG R SR R R
Sbjct: 148 GGGRE-RDRRRSRDRERSGR 166
>gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [Homo
sapiens]
Length = 240
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 3 RVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGR 55
R L R RR ++ R R R RERR+R +G GGG G GG R D+ R
Sbjct: 179 RELRRELYGRRRKKHRSRS-RSRERRSRSRDRGRGGGGGGGGGGGGRERDRRR 230
Score = 29.6 bits (65), Expect = 0.54
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 6 PRSQASRRERRPRQRQ-HRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGG 64
P S+ RRE R+R+ HR R R R + R+ D+GR G G GG
Sbjct: 176 PISRELRRELYGRRRKKHRSRSRSRERRS---------------RSRDRGRGGGGGGGGG 220
Query: 65 GGAEAWGPRAASRTRLAGSR 84
GG R SR R R
Sbjct: 221 GGGRE-RDRRRSRDRERSGR 239
>gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Homo
sapiens]
Length = 240
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 3 RVLPRSQASRRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGR 55
R L R RR ++ R R R RERR+R +G GGG G GG R D+ R
Sbjct: 179 RELRRELYGRRRKKHRSRS-RSRERRSRSRDRGRGGGGGGGGGGGGRERDRRR 230
Score = 29.6 bits (65), Expect = 0.54
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 6 PRSQASRRERRPRQRQ-HRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGG 64
P S+ RRE R+R+ HR R R R + R+ D+GR G G GG
Sbjct: 176 PISRELRRELYGRRRKKHRSRSRSRERRS---------------RSRDRGRGGGGGGGGG 220
Query: 65 GGAEAWGPRAASRTRLAGSR 84
GG R SR R R
Sbjct: 221 GGGRE-RDRRRSRDRERSGR 239
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 37.0 bits (84), Expect = 0.003
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 5 LPRSQASRRER-RPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTP-----DKGRPGS 58
LPR + R PR R R RR + P G G R GR P +GR +
Sbjct: 42 LPRRRPRRHPSVNPRSRAAGSPRTRGRRTEERPSGSRLGDRGRGRALPGGRLGGRGRGRA 101
Query: 59 PGVPG--GGGAEAWGPRAASRTRLAGSRDGEGGT 90
P G G G PRAA R GSR G GT
Sbjct: 102 PERVGGRGRGRGTAAPRAAPAAR--GSRPGPAGT 133
>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
sapiens]
Length = 859
Score = 36.6 bits (83), Expect = 0.004
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 20 RQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPG--GGGAEAW 70
R RG+ R + A+G G PG R PG PG PG GGG AW
Sbjct: 539 RSRRGKTRHRKASAKGSCGDLPGLRT----AVPPHEPGGPGSPGGLGGGPSAW 587
>gi|239754838 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 36.6 bits (83), Expect = 0.004
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 4 VLPRSQASRRERRPRQRQHR---GRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
+LPRS+A R RQR+ + G R R A P G R GG +G G P
Sbjct: 65 LLPRSRALRSGLSSRQRRSKEGLGPFRAPRIFAARP-SQPLGQRRGGGAKGQRGGGGPPN 123
Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
P G G++ G + T A + G P AR
Sbjct: 124 PPAGQGSDTGGTKTPGTTTAAAAA-ATGSASPEAR 157
>gi|239749375 PREDICTED: hypothetical protein XP_002347018 [Homo
sapiens]
Length = 265
Score = 36.6 bits (83), Expect = 0.004
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 4 VLPRSQASRRERRPRQRQHR---GRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
+LPRS+A R RQR+ + G R R A P G R GG +G G P
Sbjct: 65 LLPRSRALRSGLSSRQRRSKEGLGPFRAPRIFAARP-SQPLGQRRGGGAKGQRGGRGPPN 123
Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
P G G++ G + T A + G P AR
Sbjct: 124 PPAGQGSDTGGTKTPGTTTAAAAA-ATGSASPEAR 157
>gi|239743512 PREDICTED: hypothetical protein XP_002342879 [Homo
sapiens]
Length = 265
Score = 36.6 bits (83), Expect = 0.004
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 4 VLPRSQASRRERRPRQRQHR---GRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPG 60
+LPRS+A R RQR+ + G R R A P G R GG +G G P
Sbjct: 65 LLPRSRALRSGLSSRQRRSKEGLGPFRAPRIFAARP-SQPLGQRRGGGAKGQRGGRGPPN 123
Query: 61 VPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPSAR 95
P G G++ G + T A + G P AR
Sbjct: 124 PPAGQGSDTGGTKTPGTTTAAAAA-ATGSASPEAR 157
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 36.6 bits (83), Expect = 0.004
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 35 GPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGE 87
G RG G GFR GR G G G GGGG + G R R G++ G+
Sbjct: 32 GGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSGK 84
Score = 32.3 bits (72), Expect = 0.084
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 17 PRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAAS 76
PR GR R +G RGG G R G +GR G G GGGG G R
Sbjct: 7 PRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGG----GGRGGG 62
Query: 77 RTRLAGSRD-GEGG 89
G+R G GG
Sbjct: 63 GFHSGGNRGRGRGG 76
>gi|239755607 PREDICTED: hypothetical protein XP_002344620 [Homo
sapiens]
Length = 102
Score = 36.2 bits (82), Expect = 0.006
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 8 SQASRRE-RRPRQRQHR---------GRERRTRRDAQGPRGGGPGFRAGG---RRTPDKG 54
SQASR E R R R R G RRT+R+ +G RGGGPG G R KG
Sbjct: 20 SQASRGEGTRMRCRSARSPSSHAAGGGGARRTKREERGHRGGGPGAAGPGPGLGRAEAKG 79
Query: 55 RPGSPGVPG 63
R P + G
Sbjct: 80 RNRRPPIGG 88
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 36.2 bits (82), Expect = 0.006
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 13 RERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGV----------- 61
RE RPR + +E +A+ RG GPG GGRR +G P
Sbjct: 882 REERPRPHRSHSKEAAGPPEARSERGRGPG-PEGGRRHHRRGSPEEAAEREPRRHRAHRH 940
Query: 62 --PGGGGAEAWGPRAASRT--RLAGSRDGEGGTDPSAR 95
P A A G R A AG R+ E G +P+ R
Sbjct: 941 QDPSKECAGAKGERRARHRGGPRAGPREAESGEEPARR 978
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 12 RRERRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVP 62
RRER RQ + R +ERR + + G R P K +P P
Sbjct: 2099 RRERERRQERGRSQERRQPSSSSSEKQRFYSCDRFGGREPPKPKPSLSSHP 2149
>gi|4503119 cancer/testis antigen 1B [Homo sapiens]
Length = 180
Score = 35.8 bits (81), Expect = 0.008
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 44 RAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSR-------DGEGGTDP 92
R G T D PG PG+P G G A GP A T G R G GG P
Sbjct: 6 RGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPGGGAP 61
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 17/59 (28%)
Query: 32 DAQGPRG----GGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDG 86
DA GP G GPG AGG PG G GG GPR A R +G G
Sbjct: 14 DADGPGGPGIPDGPGGNAGG--------PGEAGATGGR-----GPRGAGAARASGPGGG 59
>gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens]
Length = 1072
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 34 QGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPS 93
Q P GGG G + RR G S PGGGG A G + R + +G GGT+P
Sbjct: 184 QEPGGGGSGGES--RRA---GAADSAPYPGGGGNGASGGGSGGSKRRLDASEGGGGTNPG 238
Query: 94 AR 95
R
Sbjct: 239 GR 240
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 36 PRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGE 87
P GGG G GG + S G GGG G + ++A + DGE
Sbjct: 207 PGGGGNGASGGGSGGSKRRLDASEG---GGGTNPGGRSSVFELQVADTPDGE 255
>gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]
Length = 1200
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 34 QGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPS 93
Q P GGG G + RR G S PGGGG A G + R + +G GGT+P
Sbjct: 184 QEPGGGGSGGES--RRA---GAADSAPYPGGGGNGASGGGSGGSKRRLDASEGGGGTNPG 238
Query: 94 AR 95
R
Sbjct: 239 GR 240
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 36 PRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGE 87
P GGG G GG + S G GGG G + ++A + DGE
Sbjct: 207 PGGGGNGASGGGSGGSKRRLDASEG---GGGTNPGGRSSVFELQVADTPDGE 255
>gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens]
Length = 1069
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 34 QGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGEGGTDPS 93
Q P GGG G + RR G S PGGGG A G + R + +G GGT+P
Sbjct: 184 QEPGGGGSGGES--RRA---GAADSAPYPGGGGNGASGGGSGGSKRRLDASEGGGGTNPG 238
Query: 94 AR 95
R
Sbjct: 239 GR 240
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 36 PRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGE 87
P GGG G GG + S G GGG G + ++A + DGE
Sbjct: 207 PGGGGNGASGGGSGGSKRRLDASEG---GGGTNPGGRSSVFELQVADTPDGE 255
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 35 GPRGGGPGFRAGGRRTPDKGRPGSPGVPGGGGAEAWGPRAASRTRLAGSRDGEGGT 90
GP GGGPG +G RT PG G GGGG GS G GGT
Sbjct: 5 GPSGGGPG-GSGRARTSSFAEPGGGGGGGGGGP-------------GGSASGPGGT 46
Score = 28.5 bits (62), Expect = 1.2
Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 24 GRERRTRRDAQGPRGGGPGFRAGGRRTPDKGRPGSPGVPGGG----GAEAWGPRAASRTR 79
G R R + GGG G GG G PG GGG GA G A+S
Sbjct: 12 GGSGRARTSSFAEPGGGGGGGGGG----PGGSASGPGGTGGGKASVGAMGGGVGASSSGG 67
Query: 80 LAGSRDGEGGTDPSA 94
G G G P A
Sbjct: 68 GPGGSGGGGSGGPGA 82
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,521,718
Number of Sequences: 37866
Number of extensions: 368972
Number of successful extensions: 7654
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 559
Number of HSP's that attempted gapping in prelim test: 2968
Number of HSP's gapped (non-prelim): 4259
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.