Guide to the Human Genome
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Search of human proteins with 239743220

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743220 PREDICTED: hypothetical protein XP_002342806 [Homo
sapiens]
         (178 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749157 PREDICTED: hypothetical protein XP_002346930 [Homo ...   382   e-107
gi|239743220 PREDICTED: hypothetical protein XP_002342806 [Homo ...   382   e-107
gi|239508892 PREDICTED: hypothetical protein [Homo sapiens]           382   e-107
gi|239754611 PREDICTED: hypothetical protein [Homo sapiens]           377   e-105
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s...    43   2e-04
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]            42   2e-04
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]                42   3e-04
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    41   6e-04
gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo ...    41   6e-04
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]         40   8e-04
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ...    40   0.001
gi|16306552 semaphorin Y [Homo sapiens]                                40   0.001
gi|146134341 hypothetical protein LOC133686 isoform 1 [Homo sapi...    40   0.001
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    40   0.001
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  39   0.002
gi|117938759 GNAS complex locus XLas [Homo sapiens]                    39   0.002
gi|33286436 gametogenetin [Homo sapiens]                               39   0.002
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s...    39   0.003
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]        38   0.004
gi|46409434 hypothetical protein LOC388759 [Homo sapiens]              38   0.004
gi|7662302 TBK1 binding protein 1 [Homo sapiens]                       38   0.004
gi|239752057 PREDICTED: hypothetical protein XP_002348077 [Homo ...    38   0.005
gi|239754569 PREDICTED: similar to hCG1793472 [Homo sapiens]           37   0.007
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]                37   0.007
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    37   0.007
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    37   0.007
gi|47933339 RNA binding motif protein 15 [Homo sapiens]                37   0.009
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     37   0.009
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]            37   0.012
gi|228008410 BEN domain containing 4 isoform b [Homo sapiens]          37   0.012

>gi|239749157 PREDICTED: hypothetical protein XP_002346930 [Homo
           sapiens]
          Length = 178

 Score =  382 bits (981), Expect = e-107
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
           MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP
Sbjct: 1   MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60

Query: 61  TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
           TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ
Sbjct: 61  TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120

Query: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
           RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP
Sbjct: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178


>gi|239743220 PREDICTED: hypothetical protein XP_002342806 [Homo
           sapiens]
          Length = 178

 Score =  382 bits (981), Expect = e-107
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
           MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP
Sbjct: 1   MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60

Query: 61  TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
           TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ
Sbjct: 61  TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120

Query: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
           RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP
Sbjct: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178


>gi|239508892 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 178

 Score =  382 bits (981), Expect = e-107
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
           MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP
Sbjct: 1   MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60

Query: 61  TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
           TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ
Sbjct: 61  TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120

Query: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
           RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP
Sbjct: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178


>gi|239754611 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 178

 Score =  377 bits (969), Expect = e-105
 Identities = 177/178 (99%), Positives = 177/178 (99%)

Query: 1   MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60
           MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP
Sbjct: 1   MEYNCPLTRACKNHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGP 60

Query: 61  TDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120
           TD RTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ
Sbjct: 61  TDRRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQ 120

Query: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178
           RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP
Sbjct: 121 RGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHIIVLALLQPFHP 178


>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
           sapiens]
          Length = 939

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 51  PELERGGPGPTDCRTSRRLRAAIVAAASPGLHGRPAA----CRGHPRPTPA--RPPTGAP 104
           P L    P   + + +     ++ A++ P L  RP A    C G P P  A  RP  G P
Sbjct: 362 PALATESPPGAEAKPTSPTGPSVCASSRPALAKRPVASKALCEGPPEPQAAGCRPQWGKP 421

Query: 105 EAPALSGRAARLHGAQRGAPAG 126
             P L G  A   G  + APAG
Sbjct: 422 AQPKLEGPGAPTQGGSKEAPAG 443


>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 34/89 (38%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 70  RAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQAR 129
           RA   +    G   RP   RG  R  P R   G P AP+   R A   G   G PA Q+ 
Sbjct: 15  RARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPG-PAAPSPPARGAAAWGRSGGGPAAQS- 72

Query: 130 HGAGNRHPPRQGQEED--GGGCGGRDSGG 156
            G G   P R G E    GGG GG   GG
Sbjct: 73  GGDGGGLPRRAGAEPGGRGGGSGGTMPGG 101


>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 39/145 (26%), Positives = 48/145 (33%), Gaps = 17/145 (11%)

Query: 20  KVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASP 79
           ++P FP  GAP            P +     P    G          R    +++    P
Sbjct: 6   ELPAFPRAGAP------------PLAASDTVPAAPEGAGAARPAAPLRPTSFSVLDILDP 53

Query: 80  G-LHGRPAAC--RGHPRPTPARPPTGAP--EAPALSGRAARLHGAQRGAPAGQARHGAGN 134
              + R   C   G   P    P   AP   APA SGR  R    +R A AG    GA  
Sbjct: 54  NKFNSRRRRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAG 113

Query: 135 RHPPRQGQEEDGGGCGGRDSGGLSS 159
             PP  G     G     D+ G SS
Sbjct: 114 AEPPNAGDPFKAGEAETNDTNGYSS 138


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 40.8 bits (94), Expect = 6e-04
 Identities = 50/171 (29%), Positives = 58/171 (33%), Gaps = 21/171 (12%)

Query: 18  GEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAA 77
           GE     P PG P  P P P     P       P     GPGP   +   R  A    AA
Sbjct: 11  GESPGATPAPGPPPPPPPAPPQQQPPPP----PPPAPPPGPGPAPPQHPPRAEALPPEAA 66

Query: 78  SPG-----LHGRPAACRGHPRPTPARPPTGAPEAPALSGR----AARLHGAQRGAPAGQA 128
             G     L  R ++C     P  A    G+P      G      A   G  RG     +
Sbjct: 67  DEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSFS 126

Query: 129 RHGAGNRHPPRQGQEEDGG----GCGGRDSGGLSSIFFSQRHIIVLALLQP 175
             GA +   P  G  E+ G    G  G   G  +S  F QR     ALLQP
Sbjct: 127 CRGAASGPAPGPGPAEEAGSEEAGPAGEPRGSQAS--FMQRQF--GALLQP 173



 Score = 31.6 bits (70), Expect = 0.38
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 20/95 (21%)

Query: 18  GEKVPTFPEPGAPFMPRPQPVVVSTPCSVQ-----CHTPELERGGPGPTDCRTSRRLRAA 72
           G++V  FP P  P      P V S   ++Q        P++ R   GP    + R     
Sbjct: 708 GQRVGLFPPPPPP------PQVTSAIATLQQAAAMSFCPQVARPLVGPLALGSPR----- 756

Query: 73  IVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAP 107
           +V    PG    PA     P P P   P GAP +P
Sbjct: 757 LVRRPPPG----PAPAAASPGPPPPASPPGAPASP 787


>gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo
           sapiens]
          Length = 324

 Score = 40.8 bits (94), Expect = 6e-04
 Identities = 42/135 (31%), Positives = 51/135 (37%), Gaps = 22/135 (16%)

Query: 33  PRPQ----PVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGRPAAC 88
           P PQ        +T  + +   P      P P + R  ++L  AI      G  GR A  
Sbjct: 88  PHPQITQRGAAAATAAAPEDSAPRRFAPDPRPPEPRPPQQLLPAI------GTRGRAATA 141

Query: 89  RGHPR-------PTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQG 141
           R HP        PT A  P   PE P    R+ R  G  RGAP       + NR  P  G
Sbjct: 142 R-HPHWLGPLVSPTTAHHPLRLPEEPPSHWRSLRAGGG-RGAPVQPL---SVNRRSPTPG 196

Query: 142 QEEDGGGCGGRDSGG 156
             E G G G  + GG
Sbjct: 197 GREAGEGEGRTEGGG 211


>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
          Length = 261

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 49/149 (32%), Positives = 56/149 (37%), Gaps = 22/149 (14%)

Query: 18  GEKVPTFPEPGA---PFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIV 74
           G + P    PGA   P   RP P+    P ++      L R  PG   CR  R   AA  
Sbjct: 36  GPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPL-RARPG---CRPRRPHPAARC 91

Query: 75  AAASPGL----HGRPAA---CRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQ 127
               P      H RP       G P+P P RP  G   A AL+G      GA  G    Q
Sbjct: 92  LPLRPHRPTRRHRRPGGFPLAWGSPQPAP-RPAPGRSSALALAG------GAAPGVARAQ 144

Query: 128 ARHGAGNR-HPPRQGQEEDGGGCGGRDSG 155
              G+G R HP   G    GG  G  D G
Sbjct: 145 RPGGSGGRSHPGGPGSPRGGGTVGPGDRG 173


>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
           sapiens]
          Length = 439

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 41/131 (31%), Positives = 49/131 (37%), Gaps = 10/131 (7%)

Query: 30  PFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGRPAACR 89
           P  P   P +  TP       P L+   P           +AA   A S     RP   R
Sbjct: 269 PTSPHQPPRLPVTPVPQSVALPSLQSARPAAAGAAPRLSPQAARCTALSTEKPDRPGPPR 328

Query: 90  GHPRPTPARPPT--GAP-EAPALSGRAARLHGAQRGAPAGQARHGA--GNRHPP----RQ 140
             P PTP   PT   AP +A  L  R        R  PA ++R+ A    RH P    R+
Sbjct: 329 RPPAPTPVSAPTLRSAPLDAHRLRERLPESSVGPRAEPARRSRNAAMVSPRHQPGKARRE 388

Query: 141 G-QEEDGGGCG 150
           G  EE  G CG
Sbjct: 389 GLWEEAVGTCG 399


>gi|16306552 semaphorin Y [Homo sapiens]
          Length = 930

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 49/141 (34%), Positives = 59/141 (41%), Gaps = 24/141 (17%)

Query: 25  PEPGAPFMPRPQPVVVSTPCSV--QCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLH 82
           P PG P     Q V V+T   +    H P+  R G  P    TSR    A+    +P L 
Sbjct: 753 PPPGCP----GQAVEVTTLEELLRYLHGPQPPRKGAEPPAPLTSR----ALPPEPAPALL 804

Query: 83  GRPAACRGHPRPTPAR---PPTG----APEAPALSGRAARLHGAQRGAPAGQARHGAGNR 135
           G P+  R H   +P R   PP G    AP  PALS  A RL     G   G+    +G+R
Sbjct: 805 GGPSP-RPHECASPLRLDVPPEGRCASAPARPALSAPAPRL-----GVGGGRRLPFSGHR 858

Query: 136 HPPRQGQEEDGGGCGGRDSGG 156
            PP        GG   R SGG
Sbjct: 859 APPALLTRVPSGG-PSRYSGG 878


>gi|146134341 hypothetical protein LOC133686 isoform 1 [Homo
           sapiens]
          Length = 442

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 111 GRAARLHGAQRGAPAGQARHGA--GNRHPPRQGQEEDGGGCGGRDSGGLSSIFFSQRHII 168
           GRAA L G   G PA + R G   G R    QGQ  +  GCG R  GG     F    ++
Sbjct: 18  GRAAALRGPGAGGPAARPRLGGDGGGRRHLGQGQPRELAGCGSRADGG-----FRPSRVV 72

Query: 169 VLA 171
           V+A
Sbjct: 73  VVA 75


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 39/138 (28%), Positives = 45/138 (32%), Gaps = 13/138 (9%)

Query: 22  PTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGL 81
           P  P+P     P P P   S P   Q         GPGP     S    ++    A+P  
Sbjct: 88  PPHPQPHQQQQPPPPPQDSSKPVVAQ---------GPGPAPGVGSAPPASSSAPPATPPT 138

Query: 82  HGRPAACRGHPRPTPARPPTGAPEA---PALSGRAARLHGAQRGAPAGQARHGAGNRHPP 138
            G P      P PTP    T AP     P            Q G P        G    P
Sbjct: 139 SGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGP 198

Query: 139 RQGQEEDGGGCGGRDSGG 156
           +QG    GG  GG+  GG
Sbjct: 199 KQG-PGPGGPKGGKMPGG 215


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 32/94 (34%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 66  SRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGAPA 125
           SRR R  ++   +P      AAC       P      AP APA SGR  R    +R A A
Sbjct: 461 SRRRRCVLLGPVAP------AAC------APCASAPCAP-APAASGRPPRAEELERRALA 507

Query: 126 GQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSS 159
           G    GA    PP  G     G     D+ G SS
Sbjct: 508 GAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSS 541


>gi|117938759 GNAS complex locus XLas [Homo sapiens]
          Length = 1037

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 29/73 (39%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 75  AAASPGLHGRPAACRGHP-RPTPARPPTGAPEAPALSG-RAARLHGAQRGAPAGQARHGA 132
           A A+P     PAA         PA P  GAP APA S  RAA++  A   APA  AR   
Sbjct: 467 AGAAPEAPAAPAAAETRAAHVAPAAPDAGAPTAPAASATRAAQVRRAASAAPASGARRKI 526

Query: 133 GNRHPPRQGQEED 145
             R P  + Q  D
Sbjct: 527 HLRPPSPEIQAAD 539


>gi|33286436 gametogenetin [Homo sapiens]
          Length = 652

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 44/153 (28%), Positives = 55/153 (35%), Gaps = 24/153 (15%)

Query: 22  PTF----PEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRL-------R 70
           PTF    P  G P  P P  +    P       P L+     PT    +  L        
Sbjct: 414 PTFIFPAPTNGEPMRPGPPGLQELPPLPPPTPPPTLQPPALQPTPLPVAPPLTPGLGHKE 473

Query: 71  AAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSG----------RAARLHG-- 118
           +A+   A+P L    AA +  P P+PA  PT A  +P +S           R  R  G  
Sbjct: 474 SALAPTAAPALPPALAADQA-PAPSPAPAPTVAEPSPPVSAPAPAAAPIKTRTRRNKGSR 532

Query: 119 AQRGAPAGQARHGAGNRHPPRQGQEEDGGGCGG 151
           A RGA      HG G R        +  GG GG
Sbjct: 533 AARGATRKDGLHGDGPRERATATVPDSSGGGGG 565



 Score = 26.9 bits (58), Expect = 9.2
 Identities = 38/133 (28%), Positives = 48/133 (36%), Gaps = 34/133 (25%)

Query: 13  NHLGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAA 72
           +H G G+  P+      P  PR   V  + P +     P LE   P P     S R    
Sbjct: 129 SHRGQGDP-PSLRPLKPPPPPRQLSVKDTVPRAPSQFPPPLETWKPPPP--LPSER---- 181

Query: 73  IVAAASPGLHGRPAACRGHPR-PTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQARHG 131
                      +PA  R  P   TPA PPT +   P             +G  AG+AR G
Sbjct: 182 -----------QPADRRITPALATPASPPTESQAGP-----------RNQGQTAGRARGG 219

Query: 132 AGNRHPPRQGQEE 144
           A    PP  G+ E
Sbjct: 220 A----PPHAGEGE 228


>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
            sapiens]
          Length = 2506

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 40/146 (27%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 17   SGEKVPTFPEPGAPFMPRPQ-PVVVSTPCSVQCHTPELER-GGPGPTDCRTSRRLRAAIV 74
            SG   P+      P   R Q P   STP     ++P + + GG GP   +  ++ +    
Sbjct: 2266 SGSPAPSTSGTSTPRRGRRQLPQTPSTPRPHVSYSPVIRKAGGSGPPQQQQQQQQQQQQQ 2325

Query: 75   AAASPGLHGRPAACRGHPRPTPA-----RPPTGAPEAPALSGRAARLHGAQRGAPAGQAR 129
            A A PG     +  R +P PT       RPPTG   +        R+ G  R       R
Sbjct: 2326 AVARPG-RAATSGPRRYPGPTAEPLAGDRPPTGGHSSGRSPRMERRVPGPARSESPRACR 2384

Query: 130  HGAGNRHPPRQGQEEDGGGCGGRDSG 155
            HG      P  G     G  G R  G
Sbjct: 2385 HGGARW--PASGPHVSEGPPGPRHHG 2408


>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
          Length = 380

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 40/133 (30%), Positives = 47/133 (35%), Gaps = 35/133 (26%)

Query: 22  PTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGL 81
           P  P    P  P P+ V             + +R  PGP++    RR+  A         
Sbjct: 122 PALPTWSVPNGPSPEEV------------EQQKRQQPGPSE-HIERRVSNA--------- 159

Query: 82  HGRPAACRGHPRPTPA-RPPTGAPEAPAL--SGRAARLHGAQRGAPAGQARHGAGNRHPP 138
            G PA   G P P P   PP G P  P L  SG  A  HGA  G P            PP
Sbjct: 160 GGPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPA----------PP 209

Query: 139 RQGQEEDGGGCGG 151
               +  GGG  G
Sbjct: 210 LPAAQGPGGGGAG 222



 Score = 30.4 bits (67), Expect = 0.84
 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 79  PGL--HGRPAACRGHPRPTPARPPTGAPEAP-----ALSGRAARLHGAQRGAPAGQARHG 131
           PGL   G PAA  G     P  PP  A + P        G AA + GA+    + Q    
Sbjct: 186 PGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLAAAIAGAKLRKVSKQEEAS 245

Query: 132 AGNRHPPRQGQEEDGGG 148
            G   P  +     GGG
Sbjct: 246 GGPTAPKAESGRSGGGG 262


>gi|46409434 hypothetical protein LOC388759 [Homo sapiens]
          Length = 237

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 33/97 (34%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 55  RGGPGPTDCRTS-RRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRA 113
           R G     C +S R LR      A P     PA     PRP+P      AP AP  +  A
Sbjct: 106 RSGSRTLRCASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRTARGA 165

Query: 114 ARLHGAQRGAPAGQARHGAGNRHPPRQGQEEDGGGCG 150
             L G       GQA  GA     P  G E    GCG
Sbjct: 166 YELQGGASQDGPGQAAVGATPTTGPGTGGEGALLGCG 202


>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
          Length = 615

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 25  PEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGR 84
           P+  +P  P P P    +P S  C +P  +R  P P  C++    R + V          
Sbjct: 368 PQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSPQRRSPV---------- 417

Query: 85  PAACRGHPRPTPARPPTGAPEAPALSGRA 113
           P +C   P P P  PP   P    L+ RA
Sbjct: 418 PPSC---PAPQPRPPPPPPPGERTLAERA 443



 Score = 31.6 bits (70), Expect = 0.38
 Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 29  APFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGR---P 85
           AP  P P P   + P    C +P  +R  P P      +R   A  +  SP    R   P
Sbjct: 344 APQCPSPSPPARAAPPCPPCQSPVPQRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVP 403

Query: 86  AACRGHPRPTPARPPTGAPEAPA 108
            +C+    P+P R     P  PA
Sbjct: 404 PSCQS---PSPQRRSPVPPSCPA 423


>gi|239752057 PREDICTED: hypothetical protein XP_002348077 [Homo
           sapiens]
          Length = 344

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 64  RTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGA--PEAPALSGRAARLHGAQR 121
           R+SRR R A +A AS G    PAA    P P+ A P   A  P  P            + 
Sbjct: 5   RSSRRTRTAGLARAS-GAPSGPAAAAAAPAPSLAAPSARALAPSPPPDLLEVDVAQAGRV 63

Query: 122 GAPAGQARHGAGNRHPPRQGQEEDGGGC 149
           G   G+A+HG   R  P   + E    C
Sbjct: 64  GRQRGRAQHGVHGRRAPLTARREAARAC 91


>gi|239754569 PREDICTED: similar to hCG1793472 [Homo sapiens]
          Length = 219

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 38/126 (30%), Positives = 45/126 (35%), Gaps = 3/126 (2%)

Query: 33  PRPQPVVVSTPCSVQCHTPELERGGPGPT-DCRTSRRLRAAIVAAASPGLHGRPAACRGH 91
           P P P V   P S Q  +  L    PGP  D R   +           GLH RP+ C   
Sbjct: 60  PGPAPPVSQWPLSAQPSSC-LPAAFPGPAFDFRRPLQTPTRPGLLPPEGLH-RPSLCLTA 117

Query: 92  PRPTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQGQEEDGGGCGG 151
             P PAR    A      SG +A   G+          HGA +   P Q Q    GG  G
Sbjct: 118 DSPRPARSRLTAASRVQSSGLSAASAGSTAACQWPLQPHGAHSSQRPFQAQFFPSGGLSG 177

Query: 152 RDSGGL 157
             S  +
Sbjct: 178 PRSSSM 183


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 37/127 (29%), Positives = 45/127 (35%), Gaps = 20/127 (15%)

Query: 15  LGSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERG--GPGPTDCRTSRRLRAA 72
           LGSG   P  P PG+   P P P  +          P +  G  G GP            
Sbjct: 228 LGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPP----------- 276

Query: 73  IVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGAPAGQARHGA 132
             +A +PG  G P     HP P    PP G P  P +S      HG            G+
Sbjct: 277 --SAGTPGA-GHPGHGHSHPHPF---PPGGMPH-PGMSQMQLAHHGPHGLGHPHAGPPGS 329

Query: 133 GNRHPPR 139
           G + PPR
Sbjct: 330 GGQPPPR 336



 Score = 26.9 bits (58), Expect = 9.2
 Identities = 32/110 (29%), Positives = 35/110 (31%), Gaps = 41/110 (37%)

Query: 16  GSGEKVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVA 75
           GSG + P  P PG   MP P P  +  P           RG P                 
Sbjct: 328 GSGGQPPPRPPPG---MPHPGPPPMGMP----------PRGPP----------------- 357

Query: 76  AASPGLHGRPAACRGHPRPTPARPP---TGAPEAPALSGRAARLHGAQRG 122
             SP  H  P    G   P P  PP   TG P  P         +G QRG
Sbjct: 358 FGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPP--------YGYQRG 399


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 36/138 (26%)

Query: 20  KVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASP 79
           +VPT P       P P PV ++TP S +   P      P  +D   S    A+ V     
Sbjct: 579 EVPTVPAEA----PAPSPVPLTTPASAEEAIPL-----PASSDSERS----ASSVEGPGG 625

Query: 80  GLHGR-------PAACRGH-------PRPTPARPPTGAPEAPALSGRAARLHGAQRGAPA 125
            L+ R       PA  RG        P P   +PP   P  PA   + + +HG    A A
Sbjct: 626 ALYARVARREARPARARGEIGGLSLSPSPERRKPP---PPDPATKPKVSWIHGKHSAAAA 682

Query: 126 GQARHGAGNRHPPRQGQE 143
           G+A        PP  G E
Sbjct: 683 GRA------PSPPPPGSE 694


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 36/138 (26%)

Query: 20  KVPTFPEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASP 79
           +VPT P       P P PV ++TP S +   P      P  +D   S    A+ V     
Sbjct: 574 EVPTVPAEA----PAPSPVPLTTPASAEEAIPL-----PASSDSERS----ASSVEGPGG 620

Query: 80  GLHGR-------PAACRGH-------PRPTPARPPTGAPEAPALSGRAARLHGAQRGAPA 125
            L+ R       PA  RG        P P   +PP   P  PA   + + +HG    A A
Sbjct: 621 ALYARVARREARPARARGEIGGLSLSPSPERRKPP---PPDPATKPKVSWIHGKHSAAAA 677

Query: 126 GQARHGAGNRHPPRQGQE 143
           G+A        PP  G E
Sbjct: 678 GRA------PSPPPPGSE 689


>gi|47933339 RNA binding motif protein 15 [Homo sapiens]
          Length = 977

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 12/119 (10%)

Query: 53  LERGGPGPTDCRTSRRLRAAIVAAASPG-----LHG----RPAACRGHPR-PTPARPPTG 102
           +   G  P   R+ R  RA  +   S G     L G    RPA  +G  R P  A+   G
Sbjct: 1   MRTAGRDPVPRRSPRWRRAVPLCETSAGRRVTQLRGDDLRRPATMKGKERSPVKAKRSRG 60

Query: 103 APEAPALSGRAARLHGA--QRGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSS 159
             ++ +   R+ +L G+    G+ +G+   G G+R      +    GG    D+GG SS
Sbjct: 61  GEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYDTGGGSS 119


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 37/132 (28%), Positives = 43/132 (32%), Gaps = 24/132 (18%)

Query: 25  PEPGAPFMPRPQPVVVSTPCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGR 84
           P P  P  P P PV  + P              P P                A PG   +
Sbjct: 129 PTPAPP--PPPAPVAAAAPARAPRAAAAAATAPPSP--------------GPAQPGPRAQ 172

Query: 85  PAACRGHPRPTPARPPTGAPEA-------PALSGRAARL-HGAQRGAPAGQARHGAGNRH 136
            AA    P P PA PP  AP A       PA++ R   L    Q  AP  Q +       
Sbjct: 173 RAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQ 232

Query: 137 PPRQGQEEDGGG 148
           PP +G     GG
Sbjct: 233 PPPEGGAVRAGG 244



 Score = 36.2 bits (82), Expect = 0.015
 Identities = 27/70 (38%), Positives = 27/70 (38%), Gaps = 14/70 (20%)

Query: 55  RGGPGPTDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAA 114
           RG   P   R  R   AA  AAA P              PTPA PP  AP A A   RA 
Sbjct: 104 RGATPPAPPRAPRGAPAAAAAAAPP--------------PTPAPPPPPAPVAAAAPARAP 149

Query: 115 RLHGAQRGAP 124
           R   A   AP
Sbjct: 150 RAAAAAATAP 159


>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 465

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 48  CHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAP 107
           C +    RGG G    +  RR +AA+  A S G  G+    RG    T      G     
Sbjct: 138 CRSRPQTRGGGG----KQPRRQKAAVAGAKSRGGEGKKPQRRGQKAATAGAKSRGG-GVR 192

Query: 108 ALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQGQEEDGGG 148
           +L G+  ++   Q+GA AG  R G G + P R+GQ+    G
Sbjct: 193 SLGGK--KMRRGQKGA-AGAKRCG-GGKQPRRRGQKASKSG 229



 Score = 26.9 bits (58), Expect = 9.2
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 107 PALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQGQEEDGGGCGGRDSGGLSSI 160
           P   G   +    Q+ A AG    G   + P R+GQ+    G   R  GG+ S+
Sbjct: 142 PQTRGGGGKQPRRQKAAVAGAKSRGGEGKKPQRRGQKAATAGAKSR-GGGVRSL 194


>gi|228008410 BEN domain containing 4 isoform b [Homo sapiens]
          Length = 441

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 14/110 (12%)

Query: 25  PEPGAPFMPRPQPVVVST-PCSVQCHTPELERGGPGPTDCRTSRRLRAAIVAAASPGLHG 83
           P P  PF P     + S+ P   Q         GPG           AA  +++SP    
Sbjct: 56  PPPPPPFAPHAAVSISSSEPPPQQFQAQSSYPPGPGRA---------AAAASSSSPSC-- 104

Query: 84  RPAACRGHPRPTPARPPTGAPEAPALSGRAARL-HGAQRGAPAGQARHGA 132
            PA  +GH R TPA+PP  +P A + S  AA + +G    A AG    G+
Sbjct: 105 TPATSQGHLR-TPAQPPPASPAASSSSSFAAVVRYGPGAAAAAGTGGTGS 153


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,056,010
Number of Sequences: 37866
Number of extensions: 808782
Number of successful extensions: 7225
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 892
Number of HSP's that attempted gapping in prelim test: 5491
Number of HSP's gapped (non-prelim): 2400
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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