Guide to the Human Genome
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Name: LOC100134105 Sequence: fasta or formatted (219aa) NCBI GI: 239754569
Description:

PREDICTED: similar to hCG1793472

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         29           2
 C cysteine            3.2          7           1
 D aspartate           1.4          3           1
 E glutamate           0.9          2           1
 F phenylalanine       3.7          8           2
 G glycine             7.3         16           2
 H histidine           2.3          5           1
 I isoleucine          0.5          1           1
 K lysine              0.9          2           1
 L leucine            13.2         29           2
 M methionine          0.9          2           1
 N asparagine          0.5          1           1
 P proline            16.4         36           2
 Q glutamine           6.8         15           1
 R arginine            7.8         17           2
 S serine             12.3         27           3
 T threonine           3.7          8           1
 V valine              3.2          7           1
 W tryptophan          1.8          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1793472 
LOC100292804          0.592   PREDICTED: similar to hCG1739112 
LOC100289693          0.592   PREDICTED: hypothetical protein XP_002347909 
LOC100293878          0.147   PREDICTED: similar to hCG1779533 
LOC729737             0.124   PREDICTED: hypothetical protein 
LOC100131871          0.114   PREDICTED: similar to hCG1779533 
LOC100131871          0.114   PREDICTED: similar to hCG1779533 
LOC100131871          0.114   PREDICTED: similar to hCG1779533 
LOC728417             0.114   PREDICTED: hypothetical protein 
LOC728417             0.114   PREDICTED: hypothetical protein 
LOC728417             0.114   PREDICTED: hypothetical protein isoform 1 
LOC731275             0.112   PREDICTED: similar to Putative uncharacterized prot...
LOC729660             0.110   PREDICTED: similar to Putative uncharacterized prot...
LOC100129904          0.098   PREDICTED: hypothetical protein 
LOC100129904          0.098   PREDICTED: hypothetical protein 
LOC100129904          0.098   PREDICTED: hypothetical protein 
LOC100129904          0.098   PREDICTED: hypothetical protein 
LOC100294359          0.093   PREDICTED: hypothetical protein 
LOC100133331          0.093   PREDICTED: hypothetical protein 
LOC731275             0.091   PREDICTED: hypothetical protein 
LOC728417             0.089   PREDICTED: hypothetical protein isoform 2 
LOC730826             0.084   PREDICTED: hypothetical protein 
LOC644794             0.082   PREDICTED: hypothetical protein 
LOC644794             0.082   PREDICTED: hypothetical protein 
LOC644794             0.082   PREDICTED: hypothetical protein 
LOC644794             0.082   PREDICTED: hypothetical protein 
LOC100287093          0.082   PREDICTED: hypothetical protein XP_002342765 
LOC100287093          0.082   PREDICTED: similar to Putative uncharacterized prot...
LOC100128326          0.079   PREDICTED: hypothetical protein 
LOC100128326          0.079   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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