Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C5orf33 Sequence: fasta or formatted (442aa) NCBI GI: 146134341
Description:

hypothetical protein LOC133686 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {279aa} hypothetical protein LOC133686 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         32           3
 C cysteine            2.3         10           2
 D aspartate           4.1         18           2
 E glutamate           8.6         38           2
 F phenylalanine       2.9         13           1
 G glycine             9.0         40           3
 H histidine           2.3         10           2
 I isoleucine          4.1         18           2
 K lysine              3.6         16           1
 L leucine            10.4         46           2
 M methionine          1.1          5           2
 N asparagine          4.3         19           1
 P proline             4.1         18           1
 Q glutamine           3.6         16           2
 R arginine           10.0         44           2
 S serine              7.9         35           3
 T threonine           3.4         15           2
 V valine              6.8         30           4
 W tryptophan          1.4          6           1
 Y tyrosine            2.9         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC133686 isoform 1 
C5orf33               0.620   hypothetical protein LOC133686 isoform 2 
LOC100293115          0.017   PREDICTED: hypothetical protein 
LOC100290693          0.017   PREDICTED: hypothetical protein XP_002346930 
LOC100289070          0.017   PREDICTED: hypothetical protein XP_002342806 
LOC100289070          0.017   PREDICTED: hypothetical protein 
CCDC9                 0.017   coiled-coil domain containing 9 
LOC100293975          0.015   PREDICTED: hypothetical protein 
LOC100290812          0.015   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.015   PREDICTED: hypothetical protein XP_002343496 
BBC3                  0.014   BCL2 binding component 3 isoform 1 
AVEN                  0.014   cell death regulator aven 
EVX2                  0.014   even-skipped homeobox 2 
EN2                   0.012   engrailed homeobox 2 
RFXAP                 0.012   regulatory factor X-associated protein 
OSBP                  0.010   oxysterol binding protein 
GTPBP2                0.010   GTP binding protein 2 
FAM98A                0.009   hypothetical protein LOC25940 
PPP1R10               0.009   protein phosphatase 1, regulatory subunit 10 
LOC100293412          0.009   PREDICTED: hypothetical protein 
LOC100127891          0.009   PREDICTED: hypothetical protein 
LOC100290067          0.009   PREDICTED: hypothetical protein XP_002347479 
LOC100289251          0.009   PREDICTED: hypothetical protein XP_002343312 
ATAD3B                0.009   AAA-ATPase  TOB3 
ASXL2                 0.009   additional sex combs like 2 
KIAA1009              0.008   KIAA1009 protein 
PIK3R2                0.008   phosphoinositide-3-kinase, regulatory subunit 2 (beta...
SOX4                  0.007   SRY (sex determining region Y)-box 4 
LOC284988             0.007   PREDICTED: hypothetical protein 
LOC100293136          0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press