Guide to the Human Genome
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Name: LOC100291243 Sequence: fasta or formatted (344aa) NCBI GI: 239752057
Description:

PREDICTED: hypothetical protein XP_002348077

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.1         52           6
 C cysteine            2.9         10           2
 D aspartate           2.9         10           1
 E glutamate           4.1         14           2
 F phenylalanine       1.2          4           1
 G glycine             6.4         22           2
 H histidine           3.5         12           1
 I isoleucine          0.9          3           1
 K lysine              0.9          3           1
 L leucine            11.3         39           2
 M methionine          0.3          1           1
 N asparagine          0.6          2           1
 P proline            10.2         35           3
 Q glutamine           5.5         19           2
 R arginine           14.8         51           3
 S serine              7.3         25           2
 T threonine           3.5         12           1
 V valine              5.8         20           1
 W tryptophan          2.9         10           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348077 
LOC100288603          0.762   PREDICTED: hypothetical protein XP_002343773 
FLJ37078              0.026   hypothetical protein LOC222183 
CDKN1C                0.023   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.023   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.023   cyclin-dependent kinase inhibitor 1C isoform a 
DACT3                 0.023   thymus expressed gene 3-like 
FAM48B1               0.022   hypothetical protein LOC100130302 
LOC100132234          0.022   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.022   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.022   PREDICTED: hypothetical protein LOC100132234 
LOC100293115          0.021   PREDICTED: hypothetical protein 
LOC100290693          0.019   PREDICTED: hypothetical protein XP_002346930 
LOC100289070          0.019   PREDICTED: hypothetical protein XP_002342806 
LOC100289070          0.019   PREDICTED: hypothetical protein 
LOC100290372          0.018   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.018   PREDICTED: hypothetical protein XP_002342652 
GPX4                  0.018   glutathione peroxidase 4 isoform C precursor 
RBMXL1                0.018   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.018   RNA binding motif protein, X-linked-like 1 
MYH14                 0.018   myosin, heavy chain 14 isoform 1 
MYH14                 0.018   myosin, heavy chain 14 isoform 2 
MYH14                 0.018   myosin, heavy chain 14 isoform 3 
LOC100293327          0.018   PREDICTED: hypothetical protein 
LOC100291252          0.018   PREDICTED: hypothetical protein XP_002347634 
LOC100287254          0.018   PREDICTED: hypothetical protein XP_002343484 
TAF4                  0.016   TBP-associated factor 4 
MAP7                  0.016   microtubule-associated protein 7 
MXRA7                 0.016   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.016   transmembrane anchor protein 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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