Guide to the Human Genome
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Name: LOC730275 Sequence: fasta or formatted (222aa) NCBI GI: 239743164
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {222aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         31           2
 C cysteine            2.7          6           1
 D aspartate           1.4          3           1
 E glutamate          10.4         23           3
 F phenylalanine       0.9          2           1
 G glycine            15.8         35           2
 H histidine           0.9          2           1
 I isoleucine          1.4          3           1
 K lysine              1.8          4           1
 L leucine             5.9         13           1
 M methionine          2.7          6           1
 N asparagine          0.9          2           1
 P proline             8.1         18           2
 Q glutamine           4.5         10           1
 R arginine           10.8         24           2
 S serine              6.3         14           3
 T threonine           3.6          8           2
 V valine              2.7          6           1
 W tryptophan          4.1          9           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730275             1.000   PREDICTED: hypothetical protein 
LOC100288692          0.374   PREDICTED: hypothetical protein XP_002343084 
LOC100294070          0.372   PREDICTED: hypothetical protein 
LOC100286887          0.372   PREDICTED: hypothetical protein XP_002342631 
LOC100288609          0.372   PREDICTED: hypothetical protein XP_002344291 
LOC100289383          0.363   PREDICTED: hypothetical protein XP_002344164 
LOC100292758          0.078   PREDICTED: hypothetical protein 
LOC100292378          0.022   PREDICTED: hypothetical protein 
APOB48R               0.022   apolipoprotein B48 receptor 
LOC100131368          0.022   PREDICTED: similar to hCG1783157 
HRNR                  0.020   hornerin 
LOC100291521          0.020   PREDICTED: hypothetical protein XP_002348052 
LOC100289308          0.020   PREDICTED: hypothetical protein XP_002344215 
COL4A3                0.020   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.020   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.020   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.020   alpha 3 type IV collagen isoform 1 precursor 
LOC100292655          0.018   PREDICTED: similar to armadillo repeat containing, ...
LOC339192             0.016   PREDICTED: hypothetical protein 
LOC339192             0.016   PREDICTED: hypothetical protein 
LOC339192             0.016   PREDICTED: hypothetical protein 
KDM1                  0.016   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.016   amine oxidase (flavin containing) domain 2 isoform b...
FBXL6                 0.016   F-box and leucine-rich repeat protein 6 isoform 2 [H...
FBXL6                 0.016   F-box and leucine-rich repeat protein 6 isoform 1 [H...
SOLH                  0.016   small optic lobes 
LOC729983             0.013   PREDICTED: hypothetical protein 
LOC729983             0.013   PREDICTED: hypothetical protein 
COL2A1                0.013   collagen, type II, alpha 1 isoform 1 precursor [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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