Guide to the Human Genome
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Name: LOC100286887 Sequence: fasta or formatted (149aa) NCBI GI: 239742765
Description:

PREDICTED: hypothetical protein XP_002342631

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         22           2
 C cysteine            3.4          5           2
 D aspartate           2.0          3           1
 E glutamate          10.7         16           2
 F phenylalanine       1.3          2           1
 G glycine            11.4         17           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              4.0          6           1
 L leucine             6.0          9           1
 M methionine          1.3          2           1
 N asparagine          0.7          1           1
 P proline             8.1         12           2
 Q glutamine           2.7          4           1
 R arginine           13.4         20           1
 S serine              8.7         13           3
 T threonine           4.7          7           1
 V valine              2.7          4           1
 W tryptophan          4.0          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342631 
LOC100288609          1.000   PREDICTED: hypothetical protein XP_002344291 
LOC100288692          0.979   PREDICTED: hypothetical protein XP_002343084 
LOC100294070          0.976   PREDICTED: hypothetical protein 
LOC100289383          0.951   PREDICTED: hypothetical protein XP_002344164 
LOC730275             0.578   PREDICTED: hypothetical protein 
LOC730275             0.578   PREDICTED: hypothetical protein 
LOC100292758          0.111   PREDICTED: hypothetical protein 
CCDC71                0.038   coiled-coil domain containing 71 
ANKRD33B              0.031   PREDICTED: ankyrin repeat domain 33B 
ANKRD33B              0.031   PREDICTED: ankyrin repeat domain 33B 
ANKRD33B              0.031   PREDICTED: ankyrin repeat domain 33B 
C19orf55              0.028   hypothetical protein LOC148137 
PHLDB3                0.024   pleckstrin homology-like domain, family B, member 3...
MGC50722              0.024   hypothetical protein LOC399693 
C1orf167              0.021   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.021   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.021   PREDICTED: hypothetical protein LOC284498 
PRDX5                 0.021   peroxiredoxin 5 isoform c precursor 
SCO1                  0.021   cytochrome oxidase deficient homolog 1 
LOC402160             0.021   PREDICTED: similar to hCG18094 
LOC651856             0.021   PREDICTED: similar to hCG2023245 
LOC100128440          0.017   PREDICTED: hypothetical protein 
LOC100128440          0.017   PREDICTED: hypothetical protein 
LOC402160             0.017   PREDICTED: similar to hCG18094 
LOC100128440          0.017   PREDICTED: hypothetical protein 
LOC402160             0.017   PREDICTED: similar to hCG18094 
SHROOM3               0.017   shroom family member 3 protein 
PRDX5                 0.017   peroxiredoxin 5 isoform b precursor 
PRDX5                 0.017   peroxiredoxin 5 isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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