Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239743023

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743023 PREDICTED: hypothetical protein XP_002342696 [Homo
sapiens]
         (110 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754461 PREDICTED: similar to hCG2029702 [Homo sapiens]          227   2e-60
gi|239749003 PREDICTED: hypothetical protein XP_002346846 [Homo ...   227   2e-60
gi|239743023 PREDICTED: hypothetical protein XP_002342696 [Homo ...   227   2e-60
gi|123173757 RAVER1 [Homo sapiens]                                     37   0.003
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ...    37   0.004
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ...    37   0.004
gi|32483397 dopamine receptor D4 [Homo sapiens]                        36   0.006
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ...    34   0.029
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ...    34   0.029
gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]            33   0.049
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9...    33   0.049
gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo ...    33   0.049
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9...    33   0.049
gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo ...    33   0.049
gi|100913209 heat shock transcription factor 4 isoform b [Homo s...    33   0.049
gi|100913211 heat shock transcription factor 4 isoform a [Homo s...    33   0.049
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]          33   0.064
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ...    33   0.064
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ...    33   0.064
gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo ...    32   0.11 
gi|55750053 atrophin-1 [Homo sapiens]                                  32   0.14 
gi|55750041 atrophin-1 [Homo sapiens]                                  32   0.14 
gi|156104872 Ets2 repressor factor [Homo sapiens]                      32   0.14 
gi|91208420 bassoon protein [Homo sapiens]                             31   0.19 
gi|194097448 RELT-like 2 [Homo sapiens]                                31   0.19 
gi|194097446 RELT-like 2 [Homo sapiens]                                31   0.19 
gi|50843837 hypothetical protein LOC55701 [Homo sapiens]               31   0.19 
gi|98985804 cyclin-dependent kinase inhibitor 2A isoform 3 [Homo...    31   0.24 
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi...    31   0.24 
gi|46909598 a disintegrin and metalloproteinase domain 15 isofor...    30   0.32 

>gi|239754461 PREDICTED: similar to hCG2029702 [Homo sapiens]
          Length = 110

 Score =  227 bits (578), Expect = 2e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60
           MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL
Sbjct: 1   MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60

Query: 61  GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110
           GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR
Sbjct: 61  GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110


>gi|239749003 PREDICTED: hypothetical protein XP_002346846 [Homo
           sapiens]
          Length = 110

 Score =  227 bits (578), Expect = 2e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60
           MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL
Sbjct: 1   MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60

Query: 61  GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110
           GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR
Sbjct: 61  GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110


>gi|239743023 PREDICTED: hypothetical protein XP_002342696 [Homo
           sapiens]
          Length = 110

 Score =  227 bits (578), Expect = 2e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60
           MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL
Sbjct: 1   MVGLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALL 60

Query: 61  GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110
           GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR
Sbjct: 61  GGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWPWGRR 110


>gi|123173757 RAVER1 [Homo sapiens]
          Length = 756

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 31/82 (37%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 31  GAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRG-PECASPRLESESGGLL 89
           G  PL     GA+P NP LG L A      GG   P +P  RG P    P +   +GG  
Sbjct: 414 GDSPLGALQPGAQPANPLLGELPA------GGGLPPELPPRRGKPPPLLPSVLGPAGGDR 467

Query: 90  RAGGRAPKSA-LPPMRWPWGRR 110
            A G  P +A L P   P G R
Sbjct: 468 EALGLGPPAAQLTPPPAPVGLR 489


>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
           sapiens]
          Length = 492

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 5   SLPTVREVRRGNARGHSAGVDPLPTAGA--------QPLSVDPTGARPLNPALGVLRAPR 56
           SLP     R G   G   G     TAG         +PL    +GARP  PA  +   P 
Sbjct: 347 SLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPP 406

Query: 57  GALLGGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWP-WG 108
            A+    A    P  R     SP        L+R GG A  +A PP   P WG
Sbjct: 407 AAVCHALAGAGAPGGRLELGLSPGTR-----LIRGGGAAVPTAAPPAPLPRWG 454


>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
           sapiens]
          Length = 492

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 5   SLPTVREVRRGNARGHSAGVDPLPTAGA--------QPLSVDPTGARPLNPALGVLRAPR 56
           SLP     R G   G   G     TAG         +PL    +GARP  PA  +   P 
Sbjct: 347 SLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPP 406

Query: 57  GALLGGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWP-WG 108
            A+    A    P  R     SP        L+R GG A  +A PP   P WG
Sbjct: 407 AAVCHALAGAGAPGGRLELGLSPGTR-----LIRGGGAAVPTAAPPAPLPRWG 454


>gi|32483397 dopamine receptor D4 [Homo sapiens]
          Length = 419

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 26  PLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSR-GPECA--SPRLE 82
           P PT  A  L  DP G     PA G+ R P G      AAP +P+   GP+CA  +P L 
Sbjct: 244 PSPTPPAPRLPQDPCGPDCAPPAPGLPRGPCGPDC-APAAPSLPQDPCGPDCAPPAPGLP 302

Query: 83  SESGGLLRAGGRAPK-SALPPMRWPWGRR 110
            +  G   A   A + +ALPP   P  RR
Sbjct: 303 PDPCGSNCAPPDAVRAAALPPQTPPQTRR 331


>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
           sapiens]
          Length = 333

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 35/101 (34%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 11  EVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPR 70
           +++RG     +    P  +A A  L      A     A G  R PR A   G    R PR
Sbjct: 181 DIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARG--RGPRRARRSG----RGPR 234

Query: 71  SRGPECASPRLESESGGLLRAGGRAPKSALPPMRWP--WGR 109
            RGPE   PR E   GGL    G A +S   P R P  W R
Sbjct: 235 -RGPE-VWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPR 273


>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
           sapiens]
          Length = 296

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 35/101 (34%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 11  EVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPR 70
           +++RG     +    P  +A A  L      A     A G  R PR A   G    R PR
Sbjct: 144 DIKRGKGGERNVPAGPGGSAAANDLRRSRVSAPVWQRARG--RGPRRARRSG----RGPR 197

Query: 71  SRGPECASPRLESESGGLLRAGGRAPKSALPPMRWP--WGR 109
            RGPE   PR E   GGL    G A +S   P R P  W R
Sbjct: 198 -RGPE-VWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPR 236


>gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 254

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 3   GLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGG 62
           G  L T   + +GN    + G D     GA  +S  P G R    A G LR P       
Sbjct: 108 GEKLVTWANLPQGNEELPALGRD----RGAGRMS--PHGKRADGQAQGQLRLP------- 154

Query: 63  SAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALP 101
            + PR P   G E  +PR +        AGGRAP  A P
Sbjct: 155 PSTPRAPDRGGCEPRAPRSQELRSWAQPAGGRAPGCAAP 193


>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 17  ARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPEC 76
           ARG +      P   A P    P  ARP  P+     APR A    S  P  P +R    
Sbjct: 141 ARGDTGDTGASPPPPAGPSLARPDAARPSVPS-----APRCA----SCPPHAPLARPSAV 191

Query: 77  A-SPRLESESGGLLRAGGRAPKSALPPMRWPWG 108
           A  P L   SGG  R    A  +  PP  WP G
Sbjct: 192 AEGPGLAQASGGSWRRCPGASSAGPPP--WPRG 222


>gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo
           sapiens]
          Length = 254

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 3   GLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGG 62
           G  L T   + +GN    + G D     GA  +S  P G R    A G LR P       
Sbjct: 108 GEKLVTWANLPQGNEELPALGRD----RGAGRMS--PHGKRADGQAQGQLRLP------- 154

Query: 63  SAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALP 101
            + PR P   G E  +PR +        AGGRAP  A P
Sbjct: 155 PSTPRAPDRGGCEPRAPRSQELRSWAQPAGGRAPGCAAP 193


>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 17  ARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPEC 76
           ARG +      P   A P    P  ARP  P+     APR A    S  P  P +R    
Sbjct: 141 ARGDTGDTGASPPPPAGPSLARPDAARPSVPS-----APRCA----SCPPHAPLARPSAV 191

Query: 77  A-SPRLESESGGLLRAGGRAPKSALPPMRWPWG 108
           A  P L   SGG  R    A  +  PP  WP G
Sbjct: 192 AEGPGLAQASGGSWRRCPGASSAGPPP--WPRG 222


>gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo
           sapiens]
          Length = 254

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 3   GLSLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGG 62
           G  L T   + +GN    + G D     GA  +S  P G R    A G LR P       
Sbjct: 108 GEKLVTWANLPQGNEELPALGRD----RGAGRMS--PHGKRADGQAQGQLRLP------- 154

Query: 63  SAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALP 101
            + PR P   G E  +PR +        AGGRAP  A P
Sbjct: 155 PSTPRAPDRGGCEPRAPRSQELRSWAQPAGGRAPGCAAP 193


>gi|100913209 heat shock transcription factor 4 isoform b [Homo
           sapiens]
          Length = 492

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 62  GSAAPRVPRS-RGPECASPRLESESGGL-LRAGGRAPKSALPPM 103
           GS +P  PR+ + PE   PR   + G L L +G R+P+S LPPM
Sbjct: 337 GSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPM 380


>gi|100913211 heat shock transcription factor 4 isoform a [Homo
           sapiens]
          Length = 462

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 62  GSAAPRVPRS-RGPECASPRLESESGGL-LRAGGRAPKSALPPM 103
           GS +P  PR+ + PE   PR   + G L L +G R+P+S LPPM
Sbjct: 307 GSFSPEGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPM 350


>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
          Length = 1192

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 14/86 (16%)

Query: 29  TAGAQPLSVDP---TGARPLNPA----LGVLRAPRGALLGGSAAPRVPRSRGPECAS--P 79
           T GA+P ++ P   + ARP++PA    L +   P G  L G  +P  P+  G   +S  P
Sbjct: 85  TGGAEPPALSPAPASPARPVSPAPGRRLSLWAVPPGPPLSGGLSPD-PKPGGAPTSSRRP 143

Query: 80  RLESESGG----LLRAGGRAPKSALP 101
            L S S G      RAGG  P S+ P
Sbjct: 144 LLSSPSWGGPEPEGRAGGGIPGSSSP 169


>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
           sapiens]
          Length = 229

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 28  PTAGAQPLSVD---PTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPECASPRLESE 84
           P  GA P       P G  P  PA    R P+G   G SA P   RSR  + A PR  + 
Sbjct: 43  PAGGASPPPSPRSRPEGPGPPRPATPSARRPQGLSAGVSAGP-AQRSRPLQLAGPRDRAP 101

Query: 85  SGGL--LRAGGRAPKSALPPMRWPWGR 109
           +  L      GRA +    P R P  R
Sbjct: 102 ARALHARTRMGRAARGPPAPSRGPLKR 128



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 18  RGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPECA 77
           RG   G  P P     P S    G++  +  L + R  +G   GG++ P  PRSR PE  
Sbjct: 7   RGPHQGGTPRPL----PASAGAQGSQARS-GLRLCRTTQGRPAGGASPPPSPRSR-PEGP 60

Query: 78  SPRLESESGGLLRAGGRAPKSALPPMR 104
            P   +        G  A  SA P  R
Sbjct: 61  GPPRPATPSARRPQGLSAGVSAGPAQR 87


>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
           sapiens]
          Length = 229

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 30/87 (34%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 28  PTAGAQPLSVD---PTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPECASPRLESE 84
           P  GA P       P G  P  PA    R P+G   G SA P   RSR  + A PR  + 
Sbjct: 43  PAGGASPPPSPRSRPEGPGPPRPATPSARRPQGLSAGVSAGP-AQRSRPLQLAGPRDRAP 101

Query: 85  SGGL--LRAGGRAPKSALPPMRWPWGR 109
           +  L      GRA +    P R P  R
Sbjct: 102 ARALHARTRMGRAARGPPAPSRGPLKR 128



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 18  RGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPECA 77
           RG   G  P P     P S    G++  +  L + R  +G   GG++ P  PRSR PE  
Sbjct: 7   RGPHQGGTPRPL----PASAGAQGSQARS-GLRLCRTTQGRPAGGASPPPSPRSR-PEGP 60

Query: 78  SPRLESESGGLLRAGGRAPKSALPPMR 104
            P   +        G  A  SA P  R
Sbjct: 61  GPPRPATPSARRPQGLSAGVSAGPAQR 87


>gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo
           sapiens]
          Length = 187

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 32/90 (35%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 23  GVDPLPTAGAQPLSVDPTGARPLNP-ALGVLRAPRGALLGGSAAPRVPRSRGPECASPRL 81
           G  P   AGA P S +     P +    G L   RG        PR    RGPE   PR 
Sbjct: 63  GQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPR----RGPE-VWPRS 117

Query: 82  ESESGGLLRAGGRAPKSALPPMRWP--WGR 109
           E   GGL    G A +S   P R P  W R
Sbjct: 118 EEGPGGLAEVRGGARRSGRGPRRGPEVWPR 147



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 14  RGNARGHSAGVDPLPTAGAQ-PLSVDP--TGARPLNPALGVLRAPRGALLGGSAAPRVPR 70
           RG      +G   L TA    PL  D   TG R     +  +   R       AA   PR
Sbjct: 16  RGLLHISHSGAQALGTAVVHIPLMTDHQRTGGRAQQQGIFHVAPNRPGQRPRVAAGAWPR 75

Query: 71  SR-GPECASPRLESESGGLLRAGGRAPKSALPPMRWP--WGR 109
           S  GPE   PR E   GGL    G A +S   P R P  W R
Sbjct: 76  SEEGPE-VWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPR 116


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 23   GVDPLPTAGAQPLSVDPTGAR--PLNPALGVLRAPRGALLGGSAAPRVPRSRGPECASPR 80
            G+DP P  G   L   P G    P +P+LG L   R AL  G A  R   S     A+ R
Sbjct: 967  GLDPFPRHGGLALQPGPPGLHPFPFHPSLGPLERERLALAAGPAL-RPDMSYAERLAAER 1025

Query: 81   LESE 84
              +E
Sbjct: 1026 QHAE 1029


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 23   GVDPLPTAGAQPLSVDPTGAR--PLNPALGVLRAPRGALLGGSAAPRVPRSRGPECASPR 80
            G+DP P  G   L   P G    P +P+LG L   R AL  G A  R   S     A+ R
Sbjct: 967  GLDPFPRHGGLALQPGPPGLHPFPFHPSLGPLERERLALAAGPAL-RPDMSYAERLAAER 1025

Query: 81   LESE 84
              +E
Sbjct: 1026 QHAE 1029


>gi|156104872 Ets2 repressor factor [Homo sapiens]
          Length = 548

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 37/105 (35%), Positives = 40/105 (38%), Gaps = 15/105 (14%)

Query: 5   SLPTVREVRRGNARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSA 64
           S    R + RG+    S G   L     +PL  DP    P  P LG  R P  A L    
Sbjct: 174 SAVVARRLGRGSVSDCSDGTSELE----EPLGEDPRARPPGPPDLGAFRGPPLARLPHDP 229

Query: 65  AP-RV-PRSR-GPECASPRLESESGGLLRAGGRAPKSALPPMRWP 106
              RV PR R GPE  SP   S   G        P S LPP   P
Sbjct: 230 GVFRVYPRPRGGPEPLSPFPVSPLAG--------PGSLLPPQLSP 266


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 18/50 (36%), Positives = 21/50 (42%)

Query: 57  GALLGGSAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALPPMRWP 106
           G L  G A P      GP    P      GG L A G A  +A+PP+  P
Sbjct: 14  GPLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGP 63


>gi|194097448 RELT-like 2 [Homo sapiens]
          Length = 303

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 19  GHSAGVDP---LPTAGAQPLSVDPTGAR--PLNPALGVLRAP---RGALLGGSAAPRVPR 70
           G   G DP     + G QP +  P   R  P  P   VL +P    G L   S  PR   
Sbjct: 194 GSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALE 253

Query: 71  SRGPECASPRLESESGGLLRAGGRAPKSALP 101
                  +PR  +E    LRAGGR P   LP
Sbjct: 254 G------NPRASAEP--TLRAGGRGPSPGLP 276


>gi|194097446 RELT-like 2 [Homo sapiens]
          Length = 303

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 31/91 (34%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 19  GHSAGVDP---LPTAGAQPLSVDPTGAR--PLNPALGVLRAP---RGALLGGSAAPRVPR 70
           G   G DP     + G QP +  P   R  P  P   VL +P    G L   S  PR   
Sbjct: 194 GSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALE 253

Query: 71  SRGPECASPRLESESGGLLRAGGRAPKSALP 101
                  +PR  +E    LRAGGR P   LP
Sbjct: 254 G------NPRASAEP--TLRAGGRGPSPGLP 276


>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
          Length = 1519

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 23  GVDPLPTAGAQPLSVDP-------TGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPE 75
           G + +P A    +S  P       +G+ PL P  G LR   G   G    P  PR  G  
Sbjct: 321 GAEAVPEAAVLEVSEPPAEAVGEASGSCPLRP--GELRGGGGGGQGAEGPPGTPRRTGKG 378

Query: 76  CASPRLESESGGLLRAGGRAPKS 98
               +  +  G L R G  AP S
Sbjct: 379 NRRKKRAAGRGALSRGGDSAPLS 401


>gi|98985804 cyclin-dependent kinase inhibitor 2A isoform 3 [Homo
          sapiens]
          Length = 116

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 11/80 (13%)

Query: 17 ARGHSAGVDPLPTAGAQPLSVDPTGARPLNPALGVLRAPRGALLGGSAAPRVPRSRGPEC 76
          ARG    V  L  AGA P + +  G RP       ++  RG+  G     R+ R++    
Sbjct: 21 ARGRVEEVRALLEAGALPNAPNSYGRRP-------IQVGRGSAAGAGDGGRLWRTK---- 69

Query: 77 ASPRLESESGGLLRAGGRAP 96
           +  LES S  +LR  GR P
Sbjct: 70 FAGELESGSASILRKKGRLP 89


>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
           sapiens]
          Length = 267

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 18  RGHSAGVDPLPTAGAQP---LSVDPTGARPLNPALGVLRAPRGALLGGSAA-PRVPRSRG 73
           R   AG  PLP     P   L    T  RP         APRGAL  G AA P+ PR   
Sbjct: 134 RPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPT----APRGALRDGLAAQPQPPRPAR 189

Query: 74  PECAS 78
           P C S
Sbjct: 190 PACGS 194


>gi|46909598 a disintegrin and metalloproteinase domain 15 isoform 5
           preproprotein [Homo sapiens]
          Length = 862

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 20/99 (20%)

Query: 17  ARGHSAGVDPLPTAGAQPLSVDPTG--------------ARPLNPALGVLRAPRGALLGG 62
           ARG  A     P   ++PL  DP                 RPL PA  V+R+P+     G
Sbjct: 755 ARGTKASALSFPAPPSRPLPPDPVSKRLQAELADRPNPPTRPL-PADPVVRSPKSQ---G 810

Query: 63  SAAPRVPRSRGPECASPRLESESGGLLRAGGRAPKSALP 101
            A P  PR   P  A P+    SG L   G   P   +P
Sbjct: 811 PAKPPPPRK--PLPADPQGRCPSGDLPGPGAGIPPLVVP 847


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,452,730
Number of Sequences: 37866
Number of extensions: 314358
Number of successful extensions: 1757
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 1616
Number of HSP's gapped (non-prelim): 321
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press