Guide to the Human Genome
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Name: LOC100287673 Sequence: fasta or formatted (106aa) NCBI GI: 239742968
Description:

PREDICTED: hypothetical protein XP_002342707

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         15           3
 C cysteine            2.8          3           1
 D aspartate           1.9          2           1
 E glutamate           3.8          4           1
 F phenylalanine       0.9          1           1
 G glycine            13.2         14           2
 H histidine           2.8          3           1
 I isoleucine          0.9          1           1
 K lysine              1.9          2           1
 L leucine             7.5          8           2
 M methionine          0.9          1           1
 N asparagine          2.8          3           1
 P proline            16.0         17           2
 Q glutamine           3.8          4           1
 R arginine            8.5          9           2
 S serine              8.5          9           2
 T threonine           4.7          5           1
 V valine              3.8          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342707 
LOC100293237          1.000   PREDICTED: hypothetical protein 
LOC100290982          1.000   PREDICTED: hypothetical protein XP_002346864 
CDK5R2                0.060   cyclin-dependent kinase 5, regulatory subunit 2 [Homo...
MYO16                 0.060   myosin heavy chain Myr 8 
TAF4                  0.050   TBP-associated factor 4 
NACA                  0.050   nascent polypeptide-associated complex alpha subuni...
SFPQ                  0.050   splicing factor proline/glutamine rich (polypyrimidin...
BUD13                 0.045   BUD13 homolog isoform 1 
CIC                   0.045   capicua homolog 
CCDC120               0.045   coiled-coil domain containing 120 isoform 2 
CCDC120               0.045   coiled-coil domain containing 120 isoform 1 
LOC100291627          0.045   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          0.045   PREDICTED: hypothetical protein XP_002348034 
SYN1                  0.045   synapsin I isoform Ia 
SYN1                  0.045   synapsin I isoform Ib 
CCDC120               0.040   coiled-coil domain containing 120 isoform 3 
CCDC120               0.040   coiled-coil domain containing 120 isoform 4 
DIAPH1                0.040   diaphanous 1 isoform 2 
DIAPH1                0.040   diaphanous 1 isoform 1 
LOC728431             0.040   PREDICTED: hypothetical protein 
WAS                   0.040   Wiskott-Aldrich syndrome protein 
C1orf229              0.040   hypothetical protein LOC388759 
TERT                  0.040   telomerase reverse transcriptase isoform 2 
TERT                  0.040   telomerase reverse transcriptase isoform 1 
WIPF1                 0.040   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.040   WAS/WASL interacting protein family, member 1 
EN2                   0.040   engrailed homeobox 2 
CASKIN2               0.040   cask-interacting protein 2 isoform b 
CASKIN2               0.040   cask-interacting protein 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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