Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TERT Sequence: fasta or formatted (1120aa) NCBI GI: 38201702
Description:

telomerase reverse transcriptase isoform 2

Referenced in:

Telomere Functions

Other entries for this name:
alt prot [1132aa] telomerase reverse transcriptase isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         98           3
 C cysteine            2.6         29           1
 D aspartate           2.9         32           2
 E glutamate           4.0         45           3
 F phenylalanine       4.2         47           2
 G glycine             6.6         74           2
 H histidine           3.0         34           2
 I isoleucine          2.0         22           2
 K lysine              3.6         40           2
 L leucine            13.1        147           3
 M methionine          1.1         12           1
 N asparagine          1.9         21           1
 P proline             7.7         86           3
 Q glutamine           4.1         46           2
 R arginine           11.2        125           3
 S serine              6.7         75           3
 T threonine           5.0         56           2
 V valine              7.7         86           2
 W tryptophan          1.6         18           1
 Y tyrosine            2.4         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   telomerase reverse transcriptase isoform 2 
TERT                  0.996   telomerase reverse transcriptase isoform 1 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
LOC729506             0.008   PREDICTED: hypothetical protein 
LOC729506             0.008   PREDICTED: hypothetical protein 
IQSEC2                0.008   IQ motif and Sec7 domain 2 isoform1 
BBC3                  0.008   BCL2 binding component 3 isoform 1 
LOC729506             0.008   PREDICTED: hypothetical protein 
FLJ22184              0.008   PREDICTED: hypothetical protein FLJ22184 
SRRM1                 0.007   serine/arginine repetitive matrix 1 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
PHACTR2               0.007   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.007   phosphatase and actin regulator 2 isoform 1 
C15orf39              0.007   hypothetical protein LOC56905 
FOXC2                 0.006   forkhead box C2 
TAF4                  0.006   TBP-associated factor 4 
SF1                   0.006   splicing factor 1 isoform 3 
SF1                   0.006   splicing factor 1 isoform 2 
SF1                   0.006   splicing factor 1 isoform 1 
PRB4                  0.006   proline-rich protein BstNI subfamily 4 precursor [Ho...
PRRT2                 0.006   proline-rich transmembrane protein 2 
LOC653720             0.006   PREDICTED: hypothetical protein 
LOC100289902          0.006   PREDICTED: hypothetical protein XP_002347558 
LOC100289428          0.006   PREDICTED: hypothetical protein XP_002343411 
LOC100288601          0.006   PREDICTED: hypothetical protein XP_002343399 
LOC100288381          0.006   PREDICTED: hypothetical protein XP_002343397 
LOC100289637          0.006   PREDICTED: hypothetical protein XP_002343387 
ELFN1                 0.006   extracellular leucine-rich repeat and fibronectin t...
MLL5                  0.006   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.006   myeloid/lymphoid or mixed-lineage leukemia 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press