Guide to the Human Genome
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Name: CCDC120 Sequence: fasta or formatted (630aa) NCBI GI: 15826862
Description:

coiled-coil domain containing 120 isoform 3

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [661aa] coiled-coil domain containing 120 isoform 1
alt prot [649aa] coiled-coil domain containing 120 isoform 2
alt prot [618aa] coiled-coil domain containing 120 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         66           4
 C cysteine            1.7         11           1
 D aspartate           3.3         21           1
 E glutamate           6.2         39           2
 F phenylalanine       1.7         11           1
 G glycine             7.9         50           3
 H histidine           2.2         14           2
 I isoleucine          0.8          5           1
 K lysine              1.9         12           1
 L leucine            11.6         73           2
 M methionine          0.8          5           1
 N asparagine          1.4          9           1
 P proline            14.3         90           3
 Q glutamine           4.6         29           3
 R arginine           10.0         63           5
 S serine             10.0         63           3
 T threonine           3.8         24           2
 V valine              4.6         29           2
 W tryptophan          1.0          6           1
 Y tyrosine            1.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 120 isoform 3 
CCDC120               0.990   coiled-coil domain containing 120 isoform 1 
CCDC120               0.975   coiled-coil domain containing 120 isoform 4 
CCDC120               0.964   coiled-coil domain containing 120 isoform 2 
FRMD4B                0.093   FERM domain containing 4B 
FRMD4A                0.081   FERM domain containing 4A 
C1orf106              0.056   hypothetical protein LOC55765 isoform 2 
C1orf106              0.056   hypothetical protein LOC55765 isoform 1 
NACA                  0.040   nascent polypeptide-associated complex alpha subuni...
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 
PRB2                  0.029   proline-rich protein BstNI subfamily 2 
RERE                  0.026   atrophin-1 like protein isoform b 
RERE                  0.026   atrophin-1 like protein isoform a 
RERE                  0.026   atrophin-1 like protein isoform a 
TAF4                  0.025   TBP-associated factor 4 
FMN2                  0.024   formin 2 
FHDC1                 0.023   FH2 domain containing 1 
PRB1                  0.022   proline-rich protein BstNI subfamily 1 isoform 1 pre...
MBD6                  0.021   methyl-CpG binding domain protein 6 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
SYNPO                 0.021   synaptopodin isoform A 
GGN                   0.021   gametogenetin 
CPSF6                 0.020   cleavage and polyadenylation specific factor 6, 68 ...
SRRM1                 0.020   serine/arginine repetitive matrix 1 
PRB3                  0.019   proline-rich protein BstNI subfamily 3 precursor [H...
TNRC18                0.019   trinucleotide repeat containing 18 
APBB1IP               0.018   amyloid beta (A4) precursor protein-binding, family ...
SHANK1                0.017   SH3 and multiple ankyrin repeat domains 1 
DIAPH1                0.017   diaphanous 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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