Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239742903
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742903 PREDICTED: hypothetical protein XP_002342672 [Homo
sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754312 PREDICTED: hypothetical protein XP_002345955 [Homo ... 276 3e-75
gi|239748874 PREDICTED: hypothetical protein XP_002346837 [Homo ... 276 3e-75
gi|239742903 PREDICTED: hypothetical protein XP_002342672 [Homo ... 276 3e-75
gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Ho... 34 0.027
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 32 0.17
gi|117414152 transcription factor 19 [Homo sapiens] 31 0.22
gi|117414156 transcription factor 19 [Homo sapiens] 31 0.22
gi|239755121 PREDICTED: hypothetical protein [Homo sapiens] 31 0.29
gi|239749649 PREDICTED: hypothetical protein [Homo sapiens] 31 0.29
gi|239743922 PREDICTED: hypothetical protein XP_002342991 [Homo ... 31 0.29
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 31 0.29
gi|30425464 transmembrane protein 105 [Homo sapiens] 31 0.29
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 30 0.38
gi|110832843 TBP-associated factor 4 [Homo sapiens] 30 0.38
gi|14993776 skeletal myosin light chain kinase [Homo sapiens] 30 0.38
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 30 0.65
gi|7657575 sirtuin 1 isoform a [Homo sapiens] 29 0.85
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens] 29 0.85
gi|239752588 PREDICTED: hypothetical protein XP_002348309, parti... 29 0.85
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens] 29 0.85
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ... 29 0.85
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 29 0.85
gi|66912172 hairy and enhancer of split 3 [Homo sapiens] 29 0.85
gi|38202224 discs large-associated protein 2 [Homo sapiens] 29 1.1
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 28 1.5
gi|239757898 PREDICTED: similar to testis expressed sequence 13A... 28 1.5
gi|239752412 PREDICTED: similar to testis expressed sequence 13A... 28 1.5
gi|239751123 PREDICTED: hypothetical protein XP_002347725 [Homo ... 28 1.5
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 28 1.5
gi|169216868 PREDICTED: similar to testis expressed sequence 13A... 28 1.5
>gi|239754312 PREDICTED: hypothetical protein XP_002345955 [Homo
sapiens]
Length = 127
Score = 276 bits (706), Expect = 3e-75
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60
MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER
Sbjct: 1 MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60
Query: 61 RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120
RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR
Sbjct: 61 RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120
Query: 121 ATTWDLL 127
ATTWDLL
Sbjct: 121 ATTWDLL 127
>gi|239748874 PREDICTED: hypothetical protein XP_002346837 [Homo
sapiens]
Length = 127
Score = 276 bits (706), Expect = 3e-75
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60
MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER
Sbjct: 1 MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60
Query: 61 RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120
RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR
Sbjct: 61 RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120
Query: 121 ATTWDLL 127
ATTWDLL
Sbjct: 121 ATTWDLL 127
>gi|239742903 PREDICTED: hypothetical protein XP_002342672 [Homo
sapiens]
Length = 127
Score = 276 bits (706), Expect = 3e-75
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60
MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER
Sbjct: 1 MPTGITYCGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGER 60
Query: 61 RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120
RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR
Sbjct: 61 RCPPGSLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFRQVPSAFWLFGVWR 120
Query: 121 ATTWDLL 127
ATTWDLL
Sbjct: 121 ATTWDLL 127
>gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Homo
sapiens]
Length = 299
Score = 34.3 bits (77), Expect = 0.027
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 19/83 (22%)
Query: 9 GLNPPHTLEGATTLALTRGPQASPPGI---LEPREKRGR--DHGPARPRSAFFPGERRCP 63
GL+P H A QASPPG+ + P +R R GP RP A G R P
Sbjct: 146 GLSPAHRPPAA---------QASPPGLSGLVHPSAQRPRRLPAGPGRPLPARLRGPRGVP 196
Query: 64 PGSLLAPDQEQGVGT-----CNC 81
G+ + P+ V C+C
Sbjct: 197 AGTAVTPNYVDNVSARVAPWCDC 219
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 31.6 bits (70), Expect = 0.17
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 27 GPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCPVAPR 86
GP+A+ PG+ E R + GR PA+ SA FP P + PD + PR
Sbjct: 58 GPEAAAPGLPELRAELGRAPSPAKCASA-FPAAPAFYPRAYSDPDPAKD---------PR 107
Query: 87 AGRKE 91
A +KE
Sbjct: 108 AEKKE 112
>gi|117414152 transcription factor 19 [Homo sapiens]
Length = 345
Score = 31.2 bits (69), Expect = 0.22
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 28 PQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCP 82
P+ PP ++EPR+K D P P R+ P + +AP G C P
Sbjct: 241 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAP 295
>gi|117414156 transcription factor 19 [Homo sapiens]
Length = 345
Score = 31.2 bits (69), Expect = 0.22
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 28 PQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCP 82
P+ PP ++EPR+K D P P R+ P + +AP G C P
Sbjct: 241 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAP 295
>gi|239755121 PREDICTED: hypothetical protein [Homo sapiens]
Length = 339
Score = 30.8 bits (68), Expect = 0.29
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 26 RGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCP 82
R P A+ PG R GR H A R E R PGS + G G C CP
Sbjct: 226 RAPAAARPGRRAQRAGGGRAHRQAVQRRVHLHAEAR--PGS-----ERAGCGRCRCP 275
>gi|239749649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 339
Score = 30.8 bits (68), Expect = 0.29
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 26 RGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCP 82
R P A+ PG R GR H A R E R PGS + G G C CP
Sbjct: 226 RAPAAARPGRRAQRAGGGRAHRQAVQRRVHLHAEAR--PGS-----ERAGCGRCRCP 275
>gi|239743922 PREDICTED: hypothetical protein XP_002342991 [Homo
sapiens]
Length = 339
Score = 30.8 bits (68), Expect = 0.29
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 26 RGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCP 82
R P A+ PG R GR H A R E R PGS + G G C CP
Sbjct: 226 RAPAAARPGRRAQRAGGGRAHRQAVQRRVHLHAEAR--PGS-----ERAGCGRCRCP 275
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 0.29
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 30 ASPPGILEPREK-RGRDHGPARPRSAFFPGERR----CPPGSLLAPDQEQGVGTCNCPVA 84
ASP G E K RGRD GP R P E+R GS D E G A
Sbjct: 160 ASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPEDCEDGED------A 213
Query: 85 PRAGRKE 91
PR GRK+
Sbjct: 214 PRPGRKK 220
>gi|30425464 transmembrane protein 105 [Homo sapiens]
Length = 129
Score = 30.8 bits (68), Expect = 0.29
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 10 LNPPHTLEGATTLALTRGPQASPPG-----------ILEPREKRGRDHGPARPRSAFFPG 58
L PP L+G T PQ SPP + E + +R R GPA +S F G
Sbjct: 43 LRPPTLLQGPRT-----SPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAG 97
Query: 59 ERRCPPGSL 67
P SL
Sbjct: 98 GLHLVPSSL 106
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 30.4 bits (67), Expect = 0.38
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 9 GLNPPHTLEGATTLALTRGPQASP----PGILEPREKRGRDHGPARPRSAFF--PGERRC 62
G+ H G+ A T PQ +P P + +P E+ + PA PR+ P RR
Sbjct: 266 GVGHLHGSRGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRP 325
Query: 63 PPGSLLAP 70
PP + +P
Sbjct: 326 PPATAPSP 333
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 30.4 bits (67), Expect = 0.38
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 9 GLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLL 68
G P EGA A P+ P G P + GP PR P PP + L
Sbjct: 72 GAGPAAPAEGAPGAA----PEPPPAGRARPGGGGPQRPGPPSPRRPLVPA-GPAPPAAKL 126
Query: 69 APDQEQGVGTC 79
P E G+C
Sbjct: 127 RPPPEGSAGSC 137
>gi|14993776 skeletal myosin light chain kinase [Homo sapiens]
Length = 596
Score = 30.4 bits (67), Expect = 0.38
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 13 PHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQ 72
P + +G TLA P G E G G A P +A P + P S+ P
Sbjct: 57 PASEKGDGTLAQPSTSSQGPKG--EGDRGGGPAEGSAGPPAAL-PQQTATPETSVKKPKA 113
Query: 73 EQGVGTCNCPVAPRAGRK 90
EQG P PR G+K
Sbjct: 114 EQGASGSQDPGKPRVGKK 131
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 29.6 bits (65), Expect = 0.65
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 29 QASPPGILEPREKRGRDHGPARPRSAFFPG--------ERRCPPGSLLAPDQEQGVGTCN 80
+A PPG+ P +G P +P A PG R PPG AP + +G
Sbjct: 51 EAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGP-- 108
Query: 81 CPVAPRAGRK 90
P P G K
Sbjct: 109 -PGPPGLGGK 117
>gi|7657575 sirtuin 1 isoform a [Homo sapiens]
Length = 747
Score = 29.3 bits (64), Expect = 0.85
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 26 RGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCPVAP 85
R +SP G EP KR R GP RS PGE PG AP++E CP A
Sbjct: 22 REAASSPAG--EPLRKRPRRDGPGLERS---PGE----PGG-AAPEREVPAAARGCPGAA 71
Query: 86 RA 87
A
Sbjct: 72 AA 73
>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 29.3 bits (64), Expect = 0.85
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 2 PTGITYCGLNP-PHTLEGATTLALTRGPQASPP---GILEPREKRGRDHGPARPRSA 54
P G++ P PH A RG +A+ P G+++PR K D P R R+A
Sbjct: 269 PAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGLVQPRPKSDIDSPPPRGRAA 325
>gi|239752588 PREDICTED: hypothetical protein XP_002348309, partial
[Homo sapiens]
Length = 327
Score = 29.3 bits (64), Expect = 0.85
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 13 PHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGS 66
PH +G+ A RGPQ EP+ H PA P S+ + G + P S
Sbjct: 206 PHASQGSQWSAWGRGPQVVGAA-WEPQAGAAAPHQPAPPESSAWQGRMQGIPAS 258
>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 29.3 bits (64), Expect = 0.85
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 2 PTGITYCGLNP-PHTLEGATTLALTRGPQASPP---GILEPREKRGRDHGPARPRSA 54
P G++ P PH A RG +A+ P G+++PR K D P R R+A
Sbjct: 269 PAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGLVQPRPKSDIDSPPPRGRAA 325
>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
sapiens]
Length = 344
Score = 29.3 bits (64), Expect = 0.85
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 2 PTGITYCGLNP-PHTLEGATTLALTRGPQASPP---GILEPREKRGRDHGPARPRSA 54
P G++ P PH A RG +A+ P G+++PR K D P R R+A
Sbjct: 269 PAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGLVQPRPKSDIDSPPPRGRAA 325
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 29.3 bits (64), Expect = 0.85
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 28 PQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPD 71
P P + P+ ++G D GPA PR A R PPG +L D
Sbjct: 1542 PAVVGPAVAGPKGEKG-DVGPAGPRGATGVQGERGPPGLVLPGD 1584
>gi|66912172 hairy and enhancer of split 3 [Homo sapiens]
Length = 186
Score = 29.3 bits (64), Expect = 0.85
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 51 PRSAFFP-GERRCPPG--SLLAPDQEQGVGTCNCPVAPRAGRKERLFHTPLGESRVFEFR 107
PR A P G R C PG LL E G G CP+ P + + LG+ FR
Sbjct: 60 PRGAEQPSGFRSCLPGVSQLLRRGDEVGSGL-RCPLVPESAAGSTMDSAGLGQEAPALFR 118
Query: 108 QVPSAFW 114
A W
Sbjct: 119 PCTPAVW 125
>gi|38202224 discs large-associated protein 2 [Homo sapiens]
Length = 975
Score = 28.9 bits (63), Expect = 1.1
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 8 CGLNPPHTLEGATTLALTRGPQASPPGILEPREKRGRDHGPARPRSA 54
CGL PP E L GP A PP +L P + PRS+
Sbjct: 19 CGLAPPEDCEH-----LHHGPDARPPYLLSPADSCPGGRHRCSPRSS 60
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 28.5 bits (62), Expect = 1.5
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 27 GPQASPPGILEPREKRGRDHGPARPRSAFFPGERRC--PPGS 66
GP A PPG P+ +G P P +A FPG R PPGS
Sbjct: 849 GP-AGPPG---PQGVKGERGSPGGPGAAGFPGARGLPGPPGS 886
>gi|239757898 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 652
Score = 28.5 bits (62), Expect = 1.5
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 6 TYCGLNPPHTLEGATTLALTR------GPQASPPGILEPREKRGRDHGPARPRSAFFPGE 59
+Y P +G TL +R GP+ L ++ GP P+ G+
Sbjct: 473 SYSQEGSPERAQGMATLVFSRSCKPEEGPERPQDTPLGDSRSHIKEEGPEGPQRIVLQGD 532
Query: 60 RRC--PPGSLLAPDQEQGVGTC--NCPVAPRAGRKERLFHTPLGESRVFEFRQVP 110
R GS ++ QG+ T + P G ER TPLG+SR R+ P
Sbjct: 533 NRSYSQEGSR---ERAQGMATLVFSRSCKPEEG-PERPQGTPLGDSRSHGVRESP 583
>gi|239752412 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 652
Score = 28.5 bits (62), Expect = 1.5
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 6 TYCGLNPPHTLEGATTLALTR------GPQASPPGILEPREKRGRDHGPARPRSAFFPGE 59
+Y P +G TL +R GP+ L ++ GP P+ G+
Sbjct: 473 SYSQEGSPERAQGMATLVFSRSCKPEEGPERPQDTPLGDSRSHIKEEGPEGPQRIVLQGD 532
Query: 60 RRC--PPGSLLAPDQEQGVGTC--NCPVAPRAGRKERLFHTPLGESRVFEFRQVP 110
R GS ++ QG+ T + P G ER TPLG+SR R+ P
Sbjct: 533 NRSYSQEGSR---ERAQGMATLVFSRSCKPEEG-PERPQGTPLGDSRSHGVRESP 583
>gi|239751123 PREDICTED: hypothetical protein XP_002347725 [Homo
sapiens]
Length = 296
Score = 28.5 bits (62), Expect = 1.5
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 27 GPQASPPGILEPREKRGRDHGPARPRSAFFPGERRCPPGSLLAPDQEQGVGTCNCPVAPR 86
G A+ PG G G AR G RR P AP++ + P APR
Sbjct: 188 GHLAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPP--APERSRTPDCPAAPAAPR 245
Query: 87 AGRKERLFHTPLGESRV 103
R R H G+ RV
Sbjct: 246 MRRPRRPPHRLRGQGRV 262
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 28.5 bits (62), Expect = 1.5
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 9 GLNPPHTLEGATTLALTRGPQASP----PGILEPREKRGRDHGPARPRSAFF--PGERRC 62
G+ H G+ A T PQ +P P + +P E+ + PA PR+ P RR
Sbjct: 266 GVGHLHGSRGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRP 325
Query: 63 PP 64
PP
Sbjct: 326 PP 327
>gi|169216868 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 714
Score = 28.5 bits (62), Expect = 1.5
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 6 TYCGLNPPHTLEGATTLALTR------GPQASPPGILEPREKRGRDHGPARPRSAFFPGE 59
+Y P +G TL +R GP+ L ++ GP P+ G+
Sbjct: 535 SYSQEGSPERAQGMATLVFSRSCKPEEGPERPQDTPLGDSRSHIKEEGPEGPQRIVLQGD 594
Query: 60 RRC--PPGSLLAPDQEQGVGTC--NCPVAPRAGRKERLFHTPLGESRVFEFRQVP 110
R GS ++ QG+ T + P G ER TPLG+SR R+ P
Sbjct: 595 NRSYSQEGSR---ERAQGMATLVFSRSCKPEEG-PERPQGTPLGDSRSHGVRESP 645
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.141 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,014,419
Number of Sequences: 37866
Number of extensions: 395857
Number of successful extensions: 1263
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 151
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.