Guide to the Human Genome
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Name: LOC100287746 Sequence: fasta or formatted (82aa) NCBI GI: 239745582
Description:

PREDICTED: hypothetical protein XP_002344135

Not currently referenced in the text

Other entries for this name:
alt mRNA {82aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0          9           1
 C cysteine            1.2          1           1
 D aspartate           0.0          0           0
 E glutamate           1.2          1           1
 F phenylalanine       4.9          4           1
 G glycine             1.2          1           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              2.4          2           1
 L leucine            18.3         15           2
 M methionine          3.7          3           1
 N asparagine          2.4          2           1
 P proline            12.2         10           2
 Q glutamine           1.2          1           1
 R arginine            4.9          4           1
 S serine             20.7         17           3
 T threonine           4.9          4           1
 V valine              6.1          5           1
 W tryptophan          2.4          2           1
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344135 
LOC100292159          1.000   PREDICTED: hypothetical protein 
LOC100287746          1.000   PREDICTED: hypothetical protein 
LOC100132605          0.197   PREDICTED: hypothetical protein 
MLL4                  0.029   myeloid/lymphoid or mixed-lineage leukemia 4 
RBM9                  0.029   RNA binding motif protein 9 isoform 4 
RBM9                  0.029   RNA binding motif protein 9 isoform 2 
ARHGEF5               0.029   rho guanine nucleotide exchange factor 5 
PRDM16                0.015   PR domain containing 16 isoform 2 
PRDM16                0.015   PR domain containing 16 isoform 1 
LRP4                  0.015   low density lipoprotein receptor-related protein 4 ...
KIAA1310              0.015   hypothetical protein LOC55683 isoform a 
KIAA1310              0.015   hypothetical protein LOC55683 isoform b 
PFKFB3                0.007   6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3...
FLJ25363              0.007   hypothetical protein LOC401082 
LOC646508             0.007   PREDICTED: hypothetical LOC646508 
LOC100130431          0.007   PREDICTED: hypothetical protein 
LOC646508             0.007   PREDICTED: hypothetical LOC646508 
LOC100130431          0.007   PREDICTED: hypothetical protein 
LOC100290519          0.007   PREDICTED: hypothetical protein XP_002346939 
LOC646508             0.007   PREDICTED: hypothetical LOC646508 
LOC100130431          0.007   PREDICTED: hypothetical protein 
SLC18A3               0.007   vesicular acetylcholine transporter 
SRCAP                 0.007   Snf2-related CBP activator protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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