Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239742378
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo
sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] 600 e-172
gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ... 600 e-172
gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo ... 600 e-172
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 49 7e-06
gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens] 47 2e-05
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 47 3e-05
gi|18079216 CASK interacting protein 1 [Homo sapiens] 46 4e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 46 4e-05
gi|239757749 PREDICTED: hypothetical protein [Homo sapiens] 45 6e-05
gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens] 45 6e-05
gi|239746769 PREDICTED: similar to Serine/threonine-protein kina... 45 6e-05
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 45 8e-05
gi|153792074 proline rich 12 [Homo sapiens] 45 8e-05
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|113416171 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|169166294 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 44 2e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 43 3e-04
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 43 4e-04
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 43 4e-04
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 42 6e-04
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 42 6e-04
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 42 6e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 42 8e-04
>gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 600 bits (1547), Expect = e-172
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MVFQLLFQSLSRVYVTIAAHLYHLIRTHRKYNYLGLQPSAGSSFPRVFGLSRSPGPLVRV 60
MVFQLLFQSLSRVYVTIAAHLYHLIRTHRKYNYLGLQPSAGSSFPRVFGLSRSPGPLVRV
Sbjct: 1 MVFQLLFQSLSRVYVTIAAHLYHLIRTHRKYNYLGLQPSAGSSFPRVFGLSRSPGPLVRV 60
Query: 61 ALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTAL 120
ALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTAL
Sbjct: 61 ALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTAL 120
Query: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAA 180
GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAA
Sbjct: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAA 180
Query: 181 RASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCG 240
RASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCG
Sbjct: 181 RASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCG 240
Query: 241 APAVGTGPGRLRGCKSFLCSPVFFKCHVFQLLKTSGRPATEEIFWIQGVRLPSPEL 296
APAVGTGPGRLRGCKSFLCSPVFFKCHVFQLLKTSGRPATEEIFWIQGVRLPSPEL
Sbjct: 241 APAVGTGPGRLRGCKSFLCSPVFFKCHVFQLLKTSGRPATEEIFWIQGVRLPSPEL 296
>gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo
sapiens]
Length = 296
Score = 600 bits (1547), Expect = e-172
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MVFQLLFQSLSRVYVTIAAHLYHLIRTHRKYNYLGLQPSAGSSFPRVFGLSRSPGPLVRV 60
MVFQLLFQSLSRVYVTIAAHLYHLIRTHRKYNYLGLQPSAGSSFPRVFGLSRSPGPLVRV
Sbjct: 1 MVFQLLFQSLSRVYVTIAAHLYHLIRTHRKYNYLGLQPSAGSSFPRVFGLSRSPGPLVRV 60
Query: 61 ALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTAL 120
ALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTAL
Sbjct: 61 ALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTAL 120
Query: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAA 180
GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAA
Sbjct: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAA 180
Query: 181 RASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCG 240
RASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCG
Sbjct: 181 RASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCG 240
Query: 241 APAVGTGPGRLRGCKSFLCSPVFFKCHVFQLLKTSGRPATEEIFWIQGVRLPSPEL 296
APAVGTGPGRLRGCKSFLCSPVFFKCHVFQLLKTSGRPATEEIFWIQGVRLPSPEL
Sbjct: 241 APAVGTGPGRLRGCKSFLCSPVFFKCHVFQLLKTSGRPATEEIFWIQGVRLPSPEL 296
>gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo
sapiens]
Length = 296
Score = 600 bits (1547), Expect = e-172
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MVFQLLFQSLSRVYVTIAAHLYHLIRTHRKYNYLGLQPSAGSSFPRVFGLSRSPGPLVRV 60
MVFQLLFQSLSRVYVTIAAHLYHLIRTHRKYNYLGLQPSAGSSFPRVFGLSRSPGPLVRV
Sbjct: 1 MVFQLLFQSLSRVYVTIAAHLYHLIRTHRKYNYLGLQPSAGSSFPRVFGLSRSPGPLVRV 60
Query: 61 ALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTAL 120
ALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTAL
Sbjct: 61 ALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTAL 120
Query: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAA 180
GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAA
Sbjct: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAA 180
Query: 181 RASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCG 240
RASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCG
Sbjct: 181 RASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCG 240
Query: 241 APAVGTGPGRLRGCKSFLCSPVFFKCHVFQLLKTSGRPATEEIFWIQGVRLPSPEL 296
APAVGTGPGRLRGCKSFLCSPVFFKCHVFQLLKTSGRPATEEIFWIQGVRLPSPEL
Sbjct: 241 APAVGTGPGRLRGCKSFLCSPVFFKCHVFQLLKTSGRPATEEIFWIQGVRLPSPEL 296
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 48.5 bits (114), Expect = 7e-06
Identities = 55/173 (31%), Positives = 68/173 (39%), Gaps = 16/173 (9%)
Query: 53 SPGPLVRVALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGL 112
SP P VR A RG+++ P P SA + A A AGR +R RR
Sbjct: 340 SPSPRVRDKAAAAAPTPPARGKES-----PSPRSAPSSQGRGGRA-AGGAGRRRRRRRRR 393
Query: 113 LRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAP-A 171
R R++A P R RRPR P GS R + + G GR GA P +
Sbjct: 394 RRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGR------GAPGPGPEPGS 447
Query: 172 RTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPR 224
G RA R PR RP P+ PG E ++R G PR
Sbjct: 448 ERGHGGHGKRAKERPPRA-RPASTSPS--PGAHGRRGGPEGKSSSRSPGPHPR 497
Score = 30.8 bits (68), Expect = 1.5
Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 15/127 (11%)
Query: 137 GSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRGFRPGLPV 196
GS P P +P+P R R+ AA A + P +A +S + RG R
Sbjct: 329 GSAHSPPDKPSSPSP---RVRDKAAAAAPTPPARGKESPSPRSAPSS--QGRGGRAAGGA 383
Query: 197 PTAPPGGLAAAAKDETSCAARERG------ASPRGDAGRVGRTRAVPSC----GAPAVGT 246
++ A R RG A PRG + + R R+ GAP G
Sbjct: 384 GRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGP 443
Query: 247 GPGRLRG 253
PG RG
Sbjct: 444 EPGSERG 450
>gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 47.0 bits (110), Expect = 2e-05
Identities = 56/169 (33%), Positives = 66/169 (39%), Gaps = 13/169 (7%)
Query: 64 CYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGR---AQRVRRGLLRWRTTAL 120
CY G RGR+ G+ PR Q A + A AA+ R A R RR LL A
Sbjct: 44 CYRAAG-GRGRETGNAQGPR---LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAAC 99
Query: 121 G-----PARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGP 175
P P LR+PR L + G RA G + R AS+D A +
Sbjct: 100 AVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEA 159
Query: 176 EDLAARASTRRPRGFRPGLP-VPTAPPGGLAAAAKDETSCAARERGASP 223
AR R RPG VP PG AA +ET A E SP
Sbjct: 160 ASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSP 208
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 46.6 bits (109), Expect = 3e-05
Identities = 59/192 (30%), Positives = 68/192 (35%), Gaps = 26/192 (13%)
Query: 67 VPGVRRG---RQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPA 123
+PG RRG R+ L PG+ + L A R R L P
Sbjct: 44 LPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCL---------PL 94
Query: 124 RPRLRRPRHRLPGG---SRRLPAPGPRAPAPGKGRERELRTGAA-SIDRAPARTGPEDLA 179
RP RHR PGG + P P PR PAPG+ L GAA + RA G +
Sbjct: 95 RPHRPTRRHRRPGGFPLAWGSPQPAPR-PAPGRSSALALAGGAAPGVARAQRPGGSGGRS 153
Query: 180 ARASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVP-- 237
PRG T PG AA D R A RG A T P
Sbjct: 154 HPGGPGSPRG------GGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQ 207
Query: 238 -SCGAPAVGTGP 248
G PA+ GP
Sbjct: 208 SHHGTPALTQGP 219
Score = 33.9 bits (76), Expect = 0.18
Identities = 45/148 (30%), Positives = 51/148 (34%), Gaps = 35/148 (23%)
Query: 82 PRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRL 141
PRP R+ +A + A RAQ R G R+ GP PR GG
Sbjct: 120 PRPAPGRSSALALAGGAAPGVARAQ--RPGGSGGRSHPGGPGSPR---------GGG--T 166
Query: 142 PAPGPRAPAPGKG-------RERELRTGAA-----------SIDRAPART----GPEDLA 179
PG R PA G R E R AA S PA T P D A
Sbjct: 167 VGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGA 226
Query: 180 ARASTRRPRGFRPGLPVPTAPPGGLAAA 207
+ RP R P PP LA+A
Sbjct: 227 QLGACTRPVDVRDSGGRPLPPPDTLASA 254
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 45.8 bits (107), Expect = 4e-05
Identities = 43/120 (35%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAP--ARTGPEDL 178
GP P ++R H P P P P AP P K L +G+A AP AR P L
Sbjct: 1254 GPGSPEVKRA-HGTPPPVSPKPPPPPTAPKPVKA-VAGLPSGSAGPSPAPSPARQPPAAL 1311
Query: 179 AARAST---------RRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGR 229
A T + P P L VP PP AAAA + A GASP GD+ R
Sbjct: 1312 AKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGASP-GDSAR 1370
Score = 35.8 bits (81), Expect = 0.046
Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 10/138 (7%)
Query: 93 ATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPG--PRAPA 150
AT+ ++ GRA+ + GP+ P R + L G PAPG PR
Sbjct: 688 ATTRQDSSLGGRARHMSSSQELLGDGPPGPSSPMSRSQEYLLDEG----PAPGTPPREAR 743
Query: 151 PGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLA-AAAK 209
PG+ R + P + P + + P RPG P P G A A AK
Sbjct: 744 PGRHGHSIKRASVPPVPGKPRQVLPPGTSHFTPPQTPTKTRPGSPQALGGPHGPAPATAK 803
Query: 210 DETS---CAARERGASPR 224
+ + ER SPR
Sbjct: 804 VKPTPQLLPPTERPMSPR 821
Score = 29.3 bits (64), Expect = 4.3
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 5/115 (4%)
Query: 141 LPAPGPRAPAPGKGRERELRT---GAASIDRAPARTGPEDLAARASTRRPRGFRPGLPVP 197
+ +P P P P + ++ T S + A TGP ++ +T +P P P
Sbjct: 631 IESPPPPEPTPADCQSPKMTTFQDSELSDELQAAMTGPAEVGP--TTEKPSSHLPPTPRA 688
Query: 198 TAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAPAVGTGPGRLR 252
T S + G P G + + R++ PA GT P R
Sbjct: 689 TTRQDSSLGGRARHMSSSQELLGDGPPGPSSPMSRSQEYLLDEGPAPGTPPREAR 743
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.8 bits (107), Expect = 4e-05
Identities = 41/114 (35%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 144 PGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARAST------RRPRGFRPGLPVP 197
PGP PA KG GA AP GP+ +A + R RGF PGLP P
Sbjct: 925 PGPPGPAGEKGSP-----GADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGF-PGLPGP 978
Query: 198 TAPPGGLAAAAKDETSCAARERG-ASPRGDAGRVGRTRAVPSCGAPAVGTGPGR 250
+ PG K S A+ ERG P G G G GAP PGR
Sbjct: 979 SGEPG------KQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGR 1026
Score = 35.8 bits (81), Expect = 0.046
Identities = 61/227 (26%), Positives = 71/227 (31%), Gaps = 35/227 (15%)
Query: 38 PSAGSSFPRVFGLSRSPGPLVRVALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAA 97
P+ FP G GP + G GVR G+ PP P A A A
Sbjct: 339 PAGPPGFPGAVGAKGEAGP--QGPRGSEGPQGVR-----GEPGPPGPAGA-----AGPAG 386
Query: 98 QAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRH-RLPGG-------SRRLPAPGPRAP 149
A G Q +G A P P R P + PGG S APG +
Sbjct: 387 NPGADG--QPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGD 444
Query: 150 APGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAK 209
KG G + P G E P G PG P PG
Sbjct: 445 TGAKGEP-----GPVGVQGPPGPAGEEGKRGARGEPGPTGL-PGPPGERGGPGSRGFPGA 498
Query: 210 DETSCA---ARERG----ASPRGDAGRVGRTRAVPSCGAPAVGTGPG 249
D + A ERG A P+G G GR GA + PG
Sbjct: 499 DGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG 545
Score = 35.8 bits (81), Expect = 0.046
Identities = 44/162 (27%), Positives = 48/162 (29%), Gaps = 38/162 (23%)
Query: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGREREL-----------RTGAASIDRA 169
GP P P R G P P A PGK ER + + G A
Sbjct: 566 GPPGP----PGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGP 621
Query: 170 PARTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDET---------SCAARERG 220
P GP GF+ GLP P PPG + S A ERG
Sbjct: 622 PGPAGPAGERGEQGPAGSPGFQ-GLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG 680
Query: 221 -------------ASPRGDAGRVGRTRAVPSCGAPAVGTGPG 249
A PRG G G A GAP G
Sbjct: 681 FPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG 722
Score = 35.0 bits (79), Expect = 0.079
Identities = 50/180 (27%), Positives = 65/180 (36%), Gaps = 18/180 (10%)
Query: 77 GDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRP---RHR 133
G+ PP P AR L T+ + R GL + A GPA P+ +
Sbjct: 242 GERGPPGPQGARG-LPGTAGLPGM---KGHRGFSGLDGAKGDA-GPAGPKGEPGSPGENG 296
Query: 134 LPG--GSRRLPAPG--PRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRG 189
PG G R LP P AP P R + TGAA GP + G
Sbjct: 297 APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAG 356
Query: 190 FRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAPAVGTGPG 249
P P + P G+ + E A P G+ G G+ A + GAP + PG
Sbjct: 357 --PQGPRGSEGPQGV----RGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG 410
Score = 35.0 bits (79), Expect = 0.079
Identities = 37/119 (31%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 135 PGGSRRLPAPGPRAPAPGKGRERELR-----TGAASIDRAPARTGPEDLAARASTRRPRG 189
P G R P +PGK R L G A +GP A R G
Sbjct: 741 PKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPG 800
Query: 190 FR--PGLPVPTA---PPGGLAA-AAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAP 242
R PG P P PPG AK E A + A P G AG G + + GAP
Sbjct: 801 DRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAP 859
Score = 33.9 bits (76), Expect = 0.18
Identities = 35/119 (29%), Positives = 38/119 (31%), Gaps = 26/119 (21%)
Query: 135 PGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRGFRPGL 194
P G P P APG GA P TG A R P G G
Sbjct: 843 PAGPAGPPGPIGNVGAPGA-------KGARGSAGPPGATGFPGAAGRVGPPGPSG-NAGP 894
Query: 195 PVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAPAVGTGPGRLRG 253
P P P G +E G PRG+ G GR V G P GP +G
Sbjct: 895 PGPPGPAG--------------KEGGKGPRGETGPAGRPGEVGPPGPP----GPAGEKG 935
Score = 30.8 bits (68), Expect = 1.5
Identities = 37/144 (25%), Positives = 46/144 (31%), Gaps = 20/144 (13%)
Query: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPA--PGKGRE---------RELRTGAASIDRA 169
GP P R +PG PGP P PG G E TG S+
Sbjct: 121 GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGP 180
Query: 170 PARTGPEDLAARASTRRPRGFR--------PGLPVPTAPPGGLAAAAKDETSCAARERG- 220
+GP L P+GF+ PG P P G K+ A + G
Sbjct: 181 MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR 240
Query: 221 ASPRGDAGRVGRTRAVPSCGAPAV 244
RG G G + G P +
Sbjct: 241 PGERGPPGPQGARGLPGTAGLPGM 264
Score = 30.0 bits (66), Expect = 2.5
Identities = 67/243 (27%), Positives = 84/243 (34%), Gaps = 33/243 (13%)
Query: 25 IRTHRKYNYL-GLQPSAGSSFPRVFGLSRSPGPLVRVA-LGCYAVPGVRRGRQAGDLSPP 82
++ HR ++ L G + AG + P+ G SPG +G +PG RGR P
Sbjct: 264 MKGHRGFSGLDGAKGDAGPAGPK--GEPGSPGENGAPGQMGPRGLPG-ERGRPGA----P 316
Query: 83 RPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLP 142
P AR AT AA G A G A P+ R P G R P
Sbjct: 317 GPAGARGNDGATGAA--GPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEG-PQGVRGEP 373
Query: 143 AP----GPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRGFRPGLPV-- 196
P G PA G + + GA + AP G P+G PG P
Sbjct: 374 GPPGPAGAAGPAGNPGADGQ--PGAKGANGAPGIAGAPGFPGARGPSGPQG--PGGPPGP 429
Query: 197 ------PTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPS----CGAPAVGT 246
P AP AK E + P G+ G+ G R P G P
Sbjct: 430 KGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRG-ARGEPGPTGLPGPPGERG 488
Query: 247 GPG 249
GPG
Sbjct: 489 GPG 491
>gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 264
Score = 45.4 bits (106), Expect = 6e-05
Identities = 58/181 (32%), Positives = 69/181 (38%), Gaps = 18/181 (9%)
Query: 64 CYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGR---AQRVRRGLLRWRTTAL 120
CY G RGR+ G+ PR Q A + A AA+ R A R RR LL A
Sbjct: 50 CYRAAG-GRGRETGNAQGPR---LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAAC 105
Query: 121 G-----PARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGP 175
P P LR+PR L + G RA G + R AS+D A +
Sbjct: 106 AVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEA 165
Query: 176 EDLAARASTRRPRGFRPGLP-VPTAPPGGLAAAAKDETSCAARE-----RGASPRGDAGR 229
AR R RPG VP PG AA +ET A E SP A R
Sbjct: 166 ASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPANR 225
Query: 230 V 230
+
Sbjct: 226 L 226
>gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 45.4 bits (106), Expect = 6e-05
Identities = 58/181 (32%), Positives = 69/181 (38%), Gaps = 18/181 (9%)
Query: 64 CYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGR---AQRVRRGLLRWRTTAL 120
CY G RGR+ G+ PR Q A + A AA+ R A R RR LL A
Sbjct: 44 CYRAAG-GRGRETGNAQGPR---LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAAC 99
Query: 121 G-----PARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGP 175
P P LR+PR L + G RA G + R AS+D A +
Sbjct: 100 AVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEA 159
Query: 176 EDLAARASTRRPRGFRPGLP-VPTAPPGGLAAAAKDETSCAARE-----RGASPRGDAGR 229
AR R RPG VP PG AA +ET A E SP A R
Sbjct: 160 ASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPANR 219
Query: 230 V 230
+
Sbjct: 220 L 220
>gi|239746769 PREDICTED: similar to Serine/threonine-protein kinase
PRKX (Protein kinase PKX1) [Homo sapiens]
Length = 330
Score = 45.4 bits (106), Expect = 6e-05
Identities = 58/181 (32%), Positives = 69/181 (38%), Gaps = 18/181 (9%)
Query: 64 CYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGR---AQRVRRGLLRWRTTAL 120
CY G RGR+ G+ PR Q A + A AA+ R A R RR LL A
Sbjct: 57 CYRAAG-GRGRETGNAQGPR---LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAAC 112
Query: 121 G-----PARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGP 175
P P LR+PR L + G RA G + R AS+D A +
Sbjct: 113 AVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEA 172
Query: 176 EDLAARASTRRPRGFRPGLP-VPTAPPGGLAAAAKDETSCAARE-----RGASPRGDAGR 229
AR R RPG VP PG AA +ET A E SP A R
Sbjct: 173 ASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPANR 232
Query: 230 V 230
+
Sbjct: 233 L 233
Score = 30.0 bits (66), Expect = 2.5
Identities = 41/139 (29%), Positives = 52/139 (37%), Gaps = 32/139 (23%)
Query: 129 RPRHRLPGGSRRL---PAPGPR--------------APAPGKGRERELRTGAASIDRAPA 171
+ +H L GG+R PAP PR A G+GRE G +A A
Sbjct: 23 KAKHSLVGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARA 82
Query: 172 RTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDE---TSCAARERGASPRGDAG 228
A+R S PRG R L PG +AA A + S R+ + R G
Sbjct: 83 AAPAFPAASRRSVPAPRGRRLLL------PGAVAACAVSDGQPLSPPLRQPRPAARAPEG 136
Query: 229 RVGRTRAVPSCGAPAVGTG 247
A+ SCG A G
Sbjct: 137 ------ALASCGLRAGWAG 149
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 45.1 bits (105), Expect = 8e-05
Identities = 57/198 (28%), Positives = 77/198 (38%), Gaps = 33/198 (16%)
Query: 77 GDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARP---RLRRPRHR 133
G L P R + R+++ A G +R +R + + GP P +LR+ R R
Sbjct: 76 GALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYE----GPGAPGGQQLRKSRAR 131
Query: 134 LPGGSRRLPAPGPRAPAPGKGRERE------LRTGAASIDRAPARTGPEDLAARASTRRP 187
LP PG R A +GR R+ LR + PAR G + A RR
Sbjct: 132 LPR-----TRPG-REDAAVRGRNRDPAEPGSLRPTSLGF---PARAGQGQVQGAAPGRRL 182
Query: 188 RGFRPGLPVPTAPPGGLAAAAKDETSCAARERGA--SPRGDAGRVGRTRAVPSCGAP--- 242
RG P + P GG+ + A + A + GA S R G R P G P
Sbjct: 183 RGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGPGPPARLPPAPP-GPPLRP 241
Query: 243 -----AVGTGPGRLRGCK 255
GPGRL C+
Sbjct: 242 ARPHNPTSRGPGRLLTCE 259
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 45.1 bits (105), Expect = 8e-05
Identities = 65/269 (24%), Positives = 93/269 (34%), Gaps = 50/269 (18%)
Query: 31 YNYLGLQPSAGSSFPRVFGLSR--SPGPLVRVALGCYAVPGVRRGRQAGDLSPPRPGSAR 88
++ L L+PS + P G R G L LG P R G PPR +
Sbjct: 186 HDVLHLKPSQAPTVPSSLGFERLAGGGVLGPAGLGPAQTPPYRPG-PPDPPPPPRHLPTQ 244
Query: 89 TQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPR-------HRLPGGSRRL 141
L+A+S+A AAAA ++ L + A GP P PR ++ P ++
Sbjct: 245 FNLLASSSAAAAAAEQSSPQ---LYNFSGAAPGPPPPERALPRQDTVIKHYQRPASAQPP 301
Query: 142 PAPGPR------------------------------APAPGKGRERELRTGAASIDRAPA 171
P P P P+PG G + A+ +
Sbjct: 302 PPPPPAHALQHYLSCGGSYPSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGATAGASGR 361
Query: 172 RTGPEDLAARASTRRPRGFRPGLPVP--TAPPGGLAAAAKDETSCAARERGASPR----- 224
TGPE + G+RP + P GG AAA T A+P+
Sbjct: 362 ATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPRSTATPKCQSLG 421
Query: 225 GDAGRVGRTRAVPSCGAPAVGTGPGRLRG 253
G A +A + GA PG+ +G
Sbjct: 422 GPAAAYATGKASGAGGAGGQAYSPGQPQG 450
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 44.7 bits (104), Expect = 1e-04
Identities = 66/240 (27%), Positives = 79/240 (32%), Gaps = 50/240 (20%)
Query: 38 PSAGSSFPRVFGLSRSPGPLVRVALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAA 97
P A P G SRS P + G + PG R + G R A SAA
Sbjct: 68 PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAA 127
Query: 98 QAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGK-GRE 156
Q RAQ V L RT + GPA P PRA G+ G E
Sbjct: 128 QRGGPARAQ-VPPAL---RTFSPGPASP--------------------PRASPGGRPGSE 163
Query: 157 RELRTGAASIDRAPARTGPEDLAARASTRRPRGFRPGLPVPTAPP-GGLAAAAKDETSCA 215
R+GA R P GP A+ + R R F+ PP G++ + +
Sbjct: 164 ARGRSGAECARRVPLHHGPPG-ASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLS 222
Query: 216 ARER------GASPRGDAGRVGRTRAV-----------------PSCGAPAVGTGPGRLR 252
R GASP G G R P G PA GPG R
Sbjct: 223 GVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLAR 282
Score = 30.0 bits (66), Expect = 2.5
Identities = 45/174 (25%), Positives = 52/174 (29%), Gaps = 59/174 (33%)
Query: 85 GSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSR----- 139
G RT + A A +GRA A G RRPR + G+
Sbjct: 12 GLQRTPAAYANEAALAISGRADE---------EGAAGAGSKLWRRPRGAVSAGAPGSPLY 62
Query: 140 --RLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPR-GFRPGLPV 196
P P P P P G R + RPR G RPG V
Sbjct: 63 RVSAPPPAPPPPPPPGGPSR--------------------------SERPRAGLRPGAFV 96
Query: 197 PTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAPAVGTGPGR 250
P G R AS G AG GR R + + A GP R
Sbjct: 97 SPGPLG----------------RRASCSGRAGSAGRLRCSAAALSAAQRGGPAR 134
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 44.7 bits (104), Expect = 1e-04
Identities = 66/240 (27%), Positives = 79/240 (32%), Gaps = 50/240 (20%)
Query: 38 PSAGSSFPRVFGLSRSPGPLVRVALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAA 97
P A P G SRS P + G + PG R + G R A SAA
Sbjct: 68 PPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAA 127
Query: 98 QAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGK-GRE 156
Q RAQ V L RT + GPA P PRA G+ G E
Sbjct: 128 QRGGPARAQ-VPPAL---RTFSPGPASP--------------------PRASPGGRPGSE 163
Query: 157 RELRTGAASIDRAPARTGPEDLAARASTRRPRGFRPGLPVPTAPP-GGLAAAAKDETSCA 215
R+GA R P GP A+ + R R F+ PP G++ + +
Sbjct: 164 ARGRSGAECARRVPLHHGPPG-ASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLS 222
Query: 216 ARER------GASPRGDAGRVGRTRAV-----------------PSCGAPAVGTGPGRLR 252
R GASP G G R P G PA GPG R
Sbjct: 223 GVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLAR 282
Score = 30.0 bits (66), Expect = 2.5
Identities = 45/174 (25%), Positives = 52/174 (29%), Gaps = 59/174 (33%)
Query: 85 GSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSR----- 139
G RT + A A +GRA A G RRPR + G+
Sbjct: 12 GLQRTPAAYANEAALAISGRADE---------EGAAGAGSKLWRRPRGAVSAGAPGSPLY 62
Query: 140 --RLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPR-GFRPGLPV 196
P P P P P G R + RPR G RPG V
Sbjct: 63 RVSAPPPAPPPPPPPGGPSR--------------------------SERPRAGLRPGAFV 96
Query: 197 PTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAPAVGTGPGR 250
P G R AS G AG GR R + + A GP R
Sbjct: 97 SPGPLG----------------RRASCSGRAGSAGRLRCSAAALSAAQRGGPAR 134
>gi|113416171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 43.5 bits (101), Expect = 2e-04
Identities = 55/189 (29%), Positives = 65/189 (34%), Gaps = 30/189 (15%)
Query: 76 AGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARP-------RLR 128
AG P AR Q+ A G++ R RR P RP R
Sbjct: 90 AGCCRANAPAPARNPRRKEPRRQSRATGKSARTRRA-------CASPCRPGRHCGPETAR 142
Query: 129 RPRH----RLPGGSRRLPAPGPRAPA----PGKGRERELRTGAASIDR-APARTGPEDLA 179
RPR GG+R L P P P R R +AS+ + P
Sbjct: 143 RPRPLAGTTFCGGARVLSNPPPSGSGGDARPSPLVPRRCRATSASLPQETPFALSVVWAP 202
Query: 180 ARASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSC 239
R S RG R G+P PP G AAA S A+R S RG + VP
Sbjct: 203 RRRSQGDARGRRTGVPCAKRPPAGWLAAAVTSWSPASRRNPGSLRG-------RKDVPRS 255
Query: 240 GAPAVGTGP 248
A G GP
Sbjct: 256 EARPAGRGP 264
>gi|169166294 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 43.5 bits (101), Expect = 2e-04
Identities = 55/189 (29%), Positives = 65/189 (34%), Gaps = 30/189 (15%)
Query: 76 AGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARP-------RLR 128
AG P AR Q+ A G++ R RR P RP R
Sbjct: 90 AGCCRANAPAPARNPRRKEPRRQSRATGKSARTRRA-------CASPCRPGRHCGPETAR 142
Query: 129 RPRH----RLPGGSRRLPAPGPRAPA----PGKGRERELRTGAASIDR-APARTGPEDLA 179
RPR GG+R L P P P R R +AS+ + P
Sbjct: 143 RPRPLAGTTFCGGARVLSNPPPSGSGGDARPSPLVPRRCRATSASLPQETPFALSVVWAP 202
Query: 180 ARASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSC 239
R S RG R G+P PP G AAA S A+R S RG + VP
Sbjct: 203 RRRSQGDARGRRTGVPCAKRPPAGWLAAAVTSWSPASRRNPGSLRG-------RKDVPRS 255
Query: 240 GAPAVGTGP 248
A G GP
Sbjct: 256 EARPAGRGP 264
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 43.5 bits (101), Expect = 2e-04
Identities = 54/164 (32%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 71 RRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRP 130
RRGR A + R GS R + + S ++ + GRA V G ++ T RP P
Sbjct: 402 RRGRMAE--ASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPRP----P 455
Query: 131 RHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRGF 190
R RR PAP A A G R A ID A R R R P
Sbjct: 456 R------PRRGPAPTLAAQAAGSCRRWR---STAEIDAADGR--------RVRPRAPAAR 498
Query: 191 RPGL-PVPTAPPGGL--AAAAKDETSCAARERGASPRGDAGRVG 231
PG P P+AP L A D A R RG AG VG
Sbjct: 499 VPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGPAGGVG 542
Score = 42.7 bits (99), Expect = 4e-04
Identities = 57/190 (30%), Positives = 70/190 (36%), Gaps = 30/190 (15%)
Query: 66 AVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARP 125
AVP + PRP R T AAQAA + R RWR+TA A
Sbjct: 436 AVPSGPPKYPTAEREEPRPPRPRRGPAPTLAAQAAGSCR---------RWRSTAEIDAAD 486
Query: 126 RLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDR--APARTGPEDLAARAS 183
RR R R P + R+P PGP AP +R L G A D + R GP
Sbjct: 487 G-RRVRPRAP--AARVPGPGPSPSAP----QRRLLYGCAGSDSECSAGRLGP------LG 533
Query: 184 TRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAPA 243
R P G G G ++A + S A + G G V + V + A
Sbjct: 534 RRGPAGGVGG------GYGESESSASEGESPAFSSASSDSDGSGGLVWPQQLVAATAASG 587
Query: 244 VGTGPGRLRG 253
G G G G
Sbjct: 588 GGAGAGAPAG 597
Score = 34.7 bits (78), Expect = 0.10
Identities = 51/189 (26%), Positives = 70/189 (37%), Gaps = 44/189 (23%)
Query: 74 RQAGDLSPPRPGSART------QLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRL 127
RQ + P PGSAR + V AA RA W ++ A P
Sbjct: 286 RQRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRA---------WASSWESEAAPE- 335
Query: 128 RRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRP 187
P P+P P +PA G+ + + GA + R L RA+ R+P
Sbjct: 336 -------PAAPPAAPSP-PDSPAEGRLVKAQYIPGAQAATRG--------LPGRAARRKP 379
Query: 188 RGFRPGLPVPTAPP----------GGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVP 237
G V +PP G +A A+ S AR+ S + + +GR AVP
Sbjct: 380 PPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRS-QSETSLLGRASAVP 438
Query: 238 SCGAPAVGT 246
S G P T
Sbjct: 439 S-GPPKYPT 446
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 43.1 bits (100), Expect = 3e-04
Identities = 74/255 (29%), Positives = 94/255 (36%), Gaps = 42/255 (16%)
Query: 38 PSAGSSFPRVFGLSRSPGPLVRVALGCYAVPGVRRGR----------QAG---DLSPPRP 84
P SS R G +R PGPL + L A V RG+ AG D S P P
Sbjct: 102 PGPVSSPGRASGTTR-PGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTP 160
Query: 85 GSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRL--- 141
G T + A RA GL R +A RP PR + S
Sbjct: 161 G--------TPSPAMARRSRAAGTEVGLPRPAPSAR--PRPPTEGPRKSVSSASEHSTTE 210
Query: 142 PAPGPRA-PAPGKGRERELR---TGAASIDRAPARTGPEDLA-----ARASTRRPRGFRP 192
P+P R P+ G G +R + +A+ +PAR+GP A S +P+G +
Sbjct: 211 PSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQA 270
Query: 193 GLPVPTAPPGGLAAAAKDETS---CAARERGASPRGDAGRVGRTRAVPSCGAPAVGT--- 246
P PP AA A S A A P A +T P P+ T
Sbjct: 271 LRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSL 330
Query: 247 GPGRLRGCKSFLCSP 261
G L+ SFL SP
Sbjct: 331 GSPTLQATHSFLPSP 345
Score = 30.4 bits (67), Expect = 1.9
Identities = 59/232 (25%), Positives = 71/232 (30%), Gaps = 43/232 (18%)
Query: 45 PRVFGLSRSPGPLVRVALGCYAVPGV--------RRGRQAGDLSP---PRPGSARTQLVA 93
PR G R P P+ AL G R G G P PR G RT
Sbjct: 27 PRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSRPP 86
Query: 94 -------------TSAAQAAAAGRAQRVRRG---------LLRWRTTALGPARPRLRRPR 131
TS ++ GRA R + T A G A +R
Sbjct: 87 ASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSA 146
Query: 132 HRLPGGSRRL---PAPGPRAPAPGK-----GRERELRTGAASIDRAPARTGPEDLAARAS 183
L G+RR P PG +PA + G E L A S P GP + AS
Sbjct: 147 --LSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSAS 204
Query: 184 TRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRA 235
P + GGL A S +A + R G RA
Sbjct: 205 EHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRA 256
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 42.7 bits (99), Expect = 4e-04
Identities = 66/224 (29%), Positives = 81/224 (36%), Gaps = 57/224 (25%)
Query: 70 VRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRR 129
+RRG +A PRP AG AQ G RW LGP PR R
Sbjct: 109 LRRGSEARKAQTPRP-----------------AGVAQGSGGGGERW-LQGLGP--PRGRG 148
Query: 130 PRHRLPGGSRRL----PAPGPRAPAPGKGR-----------------ERELRTGAASIDR 168
P S RL P P P APA GKG E+ R AA+
Sbjct: 149 LSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLG 208
Query: 169 APARTGPEDLAARAST----RRPRGFRPGLPVPTAPPGGL---AAAAKDETSCAARERGA 221
PAR AA+A T RRP P +P+AP + A + A E A
Sbjct: 209 DPARE-----AAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQA 263
Query: 222 SPRGDAGRVGRTRAVP----SCGAPAVGTGPGRLRGCKSFLCSP 261
+ A + R + P +C A G G GR R + + P
Sbjct: 264 AGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGP 307
Score = 30.8 bits (68), Expect = 1.5
Identities = 36/131 (27%), Positives = 43/131 (32%), Gaps = 26/131 (19%)
Query: 139 RRLPAPGPRAPAPGKGRERELRTGAASIDRAPART-GPEDLAARASTRR----------- 186
RR PAP PR + R G RA R GP +A A + R
Sbjct: 274 RRKPAPCPRGACAARLGGR----GTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAV 329
Query: 187 --------PRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPS 238
P G G P PP A ++ +AR G R GR G R
Sbjct: 330 SGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEG 389
Query: 239 CGA--PAVGTG 247
G+ P G G
Sbjct: 390 AGSGLPRGGRG 400
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 42.7 bits (99), Expect = 4e-04
Identities = 66/224 (29%), Positives = 81/224 (36%), Gaps = 57/224 (25%)
Query: 70 VRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRR 129
+RRG +A PRP AG AQ G RW LGP PR R
Sbjct: 109 LRRGSEARKAQTPRP-----------------AGVAQGSGGGGERW-LQGLGP--PRGRG 148
Query: 130 PRHRLPGGSRRL----PAPGPRAPAPGKGR-----------------ERELRTGAASIDR 168
P S RL P P P APA GKG E+ R AA+
Sbjct: 149 LSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLG 208
Query: 169 APARTGPEDLAARAST----RRPRGFRPGLPVPTAPPGGL---AAAAKDETSCAARERGA 221
PAR AA+A T RRP P +P+AP + A + A E A
Sbjct: 209 DPARE-----AAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQA 263
Query: 222 SPRGDAGRVGRTRAVP----SCGAPAVGTGPGRLRGCKSFLCSP 261
+ A + R + P +C A G G GR R + + P
Sbjct: 264 AGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGP 307
Score = 30.8 bits (68), Expect = 1.5
Identities = 36/131 (27%), Positives = 43/131 (32%), Gaps = 26/131 (19%)
Query: 139 RRLPAPGPRAPAPGKGRERELRTGAASIDRAPART-GPEDLAARASTRR----------- 186
RR PAP PR + R G RA R GP +A A + R
Sbjct: 274 RRKPAPCPRGACAARLGGR----GTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAV 329
Query: 187 --------PRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPS 238
P G G P PP A ++ +AR G R GR G R
Sbjct: 330 SGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEG 389
Query: 239 CGA--PAVGTG 247
G+ P G G
Sbjct: 390 AGSGLPRGGRG 400
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 42.0 bits (97), Expect = 6e-04
Identities = 54/198 (27%), Positives = 70/198 (35%), Gaps = 28/198 (14%)
Query: 49 GLSRSPGPLVRVAL-GCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRA-- 105
G SR P P+ R G + V RG +A +P P AR A A A R
Sbjct: 32 GYSRPPSPVGRARRRGTWL--RVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPP 89
Query: 106 QRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAAS 165
+R G A G R + RRPR P P PR P P GR + L A
Sbjct: 90 KRPAGGQTGGVEAASGEERSQPRRPRR---------PPPAPRRPRPAPGRRKSLYEAAPL 140
Query: 166 IDRAPARTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGA---- 221
+ R + R+ R RG TA GG ++ T+ RG
Sbjct: 141 LTR--------EKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGR 192
Query: 222 --SPRGDAGRVGRTRAVP 237
PR + + R+ P
Sbjct: 193 EEEPRRERRQPSLQRSTP 210
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 42.0 bits (97), Expect = 6e-04
Identities = 58/185 (31%), Positives = 71/185 (38%), Gaps = 30/185 (16%)
Query: 54 PGPLVRVALGCYAVPGVRRGRQA-------GDLSPPRPGSARTQLVATSAAQAAAAGRAQ 106
PG + G AV G GR+ G P P L A AAA A
Sbjct: 2 PGGVQAARFGA-AVRGGGAGRRVRVGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPPAP 60
Query: 107 RVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASI 166
R R R +AL A+PR R P + GG + +P P A P GA ++
Sbjct: 61 RERPAAAR--LSALAAAQPRRRSPGPQ-GGGGGDIASPLPPALQP---------RGAPAV 108
Query: 167 DRAPARTGPEDLAARASTRRPRGFRPGLP-VPTAPPGGLAAAAK------DETSCAARER 219
AP+ P L AR S+ PR P P P PP LAA + S ARE+
Sbjct: 109 PAAPS---PGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGSVTAREQ 165
Query: 220 GASPR 224
PR
Sbjct: 166 EQRPR 170
Score = 28.9 bits (63), Expect = 5.7
Identities = 45/166 (27%), Positives = 56/166 (33%), Gaps = 37/166 (22%)
Query: 54 PGPLVRVALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQ--------------- 98
PGP + VA + G+R A PR A +L A +AAQ
Sbjct: 36 PGPALVVA----GLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPGPQGGGGGD 91
Query: 99 -AAAAGRAQRVRRGLLRWRTTALGP--ARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGR 155
A+ A + R + GP ARP PR LP G R P AP
Sbjct: 92 IASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPL 151
Query: 156 ERELRTGAASIDRAPARTGPEDLAARASTRRPRG-FRPGLPVPTAP 200
R L G+ + AR +RPR R G P P
Sbjct: 152 ARPLPQGS--------------VTAREQEQRPRSRRRAGAPEALGP 183
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 42.0 bits (97), Expect = 6e-04
Identities = 54/198 (27%), Positives = 70/198 (35%), Gaps = 28/198 (14%)
Query: 49 GLSRSPGPLVRVAL-GCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRA-- 105
G SR P P+ R G + V RG +A +P P AR A A A R
Sbjct: 32 GYSRPPSPVGRARRRGTWL--RVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPP 89
Query: 106 QRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAAS 165
+R G A G R + RRPR P P PR P P GR + L A
Sbjct: 90 KRPAGGQTGGVEAASGEERSQPRRPRR---------PPPAPRRPRPAPGRRKSLYEAAPL 140
Query: 166 IDRAPARTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGA---- 221
+ R + R+ R RG TA GG ++ T+ RG
Sbjct: 141 LTR--------EKGGRSGRRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGR 192
Query: 222 --SPRGDAGRVGRTRAVP 237
PR + + R+ P
Sbjct: 193 EEEPRRERRQPSLQRSTP 210
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 42.0 bits (97), Expect = 6e-04
Identities = 58/185 (31%), Positives = 71/185 (38%), Gaps = 30/185 (16%)
Query: 54 PGPLVRVALGCYAVPGVRRGRQA-------GDLSPPRPGSARTQLVATSAAQAAAAGRAQ 106
PG + G AV G GR+ G P P L A AAA A
Sbjct: 2 PGGVQAARFGA-AVRGGGAGRRVRVGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPPAP 60
Query: 107 RVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASI 166
R R R +AL A+PR R P + GG + +P P A P GA ++
Sbjct: 61 RERPAAAR--LSALAAAQPRRRSPGPQ-GGGGGDIASPLPPALQP---------RGAPAV 108
Query: 167 DRAPARTGPEDLAARASTRRPRGFRPGLP-VPTAPPGGLAAAAK------DETSCAARER 219
AP+ P L AR S+ PR P P P PP LAA + S ARE+
Sbjct: 109 PAAPS---PGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGSVTAREQ 165
Query: 220 GASPR 224
PR
Sbjct: 166 EQRPR 170
Score = 28.9 bits (63), Expect = 5.7
Identities = 45/166 (27%), Positives = 56/166 (33%), Gaps = 37/166 (22%)
Query: 54 PGPLVRVALGCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQ--------------- 98
PGP + VA + G+R A PR A +L A +AAQ
Sbjct: 36 PGPALVVA----GLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPGPQGGGGGD 91
Query: 99 -AAAAGRAQRVRRGLLRWRTTALGP--ARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGR 155
A+ A + R + GP ARP PR LP G R P AP
Sbjct: 92 IASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPL 151
Query: 156 ERELRTGAASIDRAPARTGPEDLAARASTRRPRG-FRPGLPVPTAP 200
R L G+ + AR +RPR R G P P
Sbjct: 152 ARPLPQGS--------------VTAREQEQRPRSRRRAGAPEALGP 183
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 42.0 bits (97), Expect = 6e-04
Identities = 54/198 (27%), Positives = 70/198 (35%), Gaps = 28/198 (14%)
Query: 49 GLSRSPGPLVRVAL-GCYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRA-- 105
G SR P P+ R G + V RG +A +P P AR A A A R
Sbjct: 32 GYSRPPSPVGRARRRGTWL--RVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPP 89
Query: 106 QRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAAS 165
+R G A G R + RRPR P P PR P P GR + L A
Sbjct: 90 KRPAGGQTGGVEAASGEERSQPRRPRR---------PPPAPRRPRPAPGRRKSLYEAAPL 140
Query: 166 IDRAPARTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGA---- 221
+ R + R+ R RG TA GG ++ T+ RG
Sbjct: 141 LTR--------EKGGRSGRRGDRGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGR 192
Query: 222 --SPRGDAGRVGRTRAVP 237
PR + + R+ P
Sbjct: 193 EEEPRRERRQPSLQRSTP 210
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 42.0 bits (97), Expect = 6e-04
Identities = 64/217 (29%), Positives = 77/217 (35%), Gaps = 39/217 (17%)
Query: 45 PRVFGLSRSPGPLVRVA-LGCYAVPGVRRGRQAGDLSPPRPGSARTQ--LVATSAAQAAA 101
P G ++ GP A G PG G G P PG+A+T A + AA
Sbjct: 152 PAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAA 211
Query: 102 AGRAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPA-------PGPRAPAPGKG 154
A V G AL P P+ PG + P P P AP+P
Sbjct: 212 APAVSLVNNG-----PAALLPL------PKPAAPGTVIQTPPFVGAAAPPAPAAPSPP-- 258
Query: 155 RERELRTGAASIDRAPARTGPEDLAARASTRRPRGFRPGLP--VPTAPPGGLAAAAKDET 212
AA APA P A A+ RP G G P P PP AAA +
Sbjct: 259 --------AAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPP--AAAQNGGS 308
Query: 213 SCAARERGASPRGDAGRVGRTRAVPSCGAPAVGTGPG 249
+ AA + G AG G+ P GA A PG
Sbjct: 309 AGAAPAPAPAAGGPAGVSGQ----PGPGAAAAAPAPG 341
Score = 32.7 bits (73), Expect = 0.39
Identities = 54/197 (27%), Positives = 61/197 (30%), Gaps = 60/197 (30%)
Query: 85 GSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAP 144
GS +QL A++A A R VR ALG H + G
Sbjct: 27 GSLESQLAASAAHHHHLAPRTPEVRAAA----AGALG---------NHVVSGSPAGAAGA 73
Query: 145 GPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRG---FRPGLPVP---- 197
GP APA G AP A RA RP G RPG P P
Sbjct: 74 GPAAPAEG----------------APGAAPEPPPAGRA---RPGGGGPQRPGPPSPRRPL 114
Query: 198 ------------TAPPGGLAAAAKDETSCAARERG--------ASPRGDAGRVGRTRAVP 237
PP G A + + AA G A P G A R P
Sbjct: 115 VPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGP 174
Query: 238 SCG-APAVGTGPGRLRG 253
G P G GPG+ G
Sbjct: 175 GPGPGPGPGPGPGKPAG 191
Score = 30.8 bits (68), Expect = 1.5
Identities = 61/240 (25%), Positives = 77/240 (32%), Gaps = 40/240 (16%)
Query: 55 GPLVRVALGCYAVPG--VRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGL 112
GP + L A PG ++ G +PP P + AA AAA L
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL 280
Query: 113 LRWRTTALGP--ARPRLRRPRHRLPGGSRRL-----------------PAPGPR--APAP 151
R GP A P + P GGS P PG APAP
Sbjct: 281 ARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP 340
Query: 152 GKGRERELRTGAASIDRAP--ARTGPEDLAA--------RASTRRPRGFRPGLPVPTAPP 201
G E R A+ A A +GP AA + + P P P P P
Sbjct: 341 GVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPP--PAPGTPT 398
Query: 202 GGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAPAVGTGPGRLRGCKSFLCSP 261
G AA T +R A+ G R P+ AP + P ++F P
Sbjct: 399 GLPKGAAGAVTQSLSRTPTATTSGI-----RATLTPTVLAPRLPQPPQNPTNIQNFQLPP 453
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 42.0 bits (97), Expect = 6e-04
Identities = 54/213 (25%), Positives = 73/213 (34%), Gaps = 37/213 (17%)
Query: 38 PSAGSSFPRVFGLSRSPGPLVRVALGCYAVPGVRRGR----------QAGDLSPPRPGSA 87
P +P + G +PG + LG +PG++ R G L PP P
Sbjct: 599 PPGDPGYPGIPGTKGTPGEMGPPGLG---LPGLKGQRGFPGDAGLPGPPGFLGPPGPAGT 655
Query: 88 RTQLVATSAAQAAAAG-RAQRVRRGLL---RWRTTALGPARPRLRRPRHRLPGGSRRLPA 143
Q+ + + A G R + ++ G + + GP P + +PG +
Sbjct: 656 PGQIDCDTDVKRAVGGDRQEAIQPGCIGGPKGLPGLPGPPGPTGAKGLRGIPGFAGADGG 715
Query: 144 PGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRGFRP--GLPVPTAPP 201
PGPR GRE P GP P G GLP P PP
Sbjct: 716 PGPRGLPGDAGRE--------GFPGPPGFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGPP 767
Query: 202 GGLAAAAKDETSCAARERGA--SPRGDAGRVGR 232
G E GA PRGDAG G+
Sbjct: 768 G--------ERGLPGEVLGAQPGPRGDAGVPGQ 792
Score = 32.3 bits (72), Expect = 0.51
Identities = 56/216 (25%), Positives = 72/216 (33%), Gaps = 35/216 (16%)
Query: 45 PRVFGLSRSPGPLVRVALGCYAVPGVRRGRQAGDL-SPPRPGSARTQLVATSAAQAAAAG 103
P +FGL GP G A+PG + GD +P PG+ T+ A + G
Sbjct: 1286 PGIFGLKGYRGP--PGPPGSAALPGSK-----GDTGNPGAPGTPGTKGWAGDSGPQGRPG 1338
Query: 104 RAQRVRRGLLRWRTTALGPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGA 163
G + R G + A G R P KG GA
Sbjct: 1339 ---------------VFGLPGEKGPRGEQGFMGNTGPTGAVGDRGPKGPKGDPGF--PGA 1381
Query: 164 ASIDRAPARTG-PEDLAARASTRRPRGFR-----PGLPVPTAPPGGLAAAAKDETSCAAR 217
AP G P+ +A + T P+G R PG P PPG +
Sbjct: 1382 PGTVGAPGIAGIPQKIAVQPGTVGPQGRRGPPGAPGEMGPQGPPGEPGFRGAPGKAGPQG 1441
Query: 218 ERGASP----RGDAGRVGRTRAVPSCGAPAVGTGPG 249
G S RGD G +G + GAP PG
Sbjct: 1442 RGGVSAVPGFRGDEGPIGHQGPIGQEGAPGRPGSPG 1477
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 42.0 bits (97), Expect = 6e-04
Identities = 51/190 (26%), Positives = 69/190 (36%), Gaps = 16/190 (8%)
Query: 68 PGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRL 127
P G QAG P P ++R+ + Q+ + V G T+LGP P
Sbjct: 45 PQAPEGSQAGAEGPSSPEASRSP-ARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGT 103
Query: 128 RRPR-----HRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARA 182
P + +P R PAP P P PG G A APA P A+R
Sbjct: 104 GEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESE----GLAPQGAAPA--SPPTKASRT 157
Query: 183 STRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAP 242
+ P R + + P + + + RER A+P G + R S G P
Sbjct: 158 KSPGP-ARRLSIKMKKLPELRRRLSLRGPRAGRERER-AAPAGSV--ISRYHLDSSVGGP 213
Query: 243 AVGTGPGRLR 252
GPG R
Sbjct: 214 GPAAGPGGTR 223
Score = 28.9 bits (63), Expect = 5.7
Identities = 45/167 (26%), Positives = 62/167 (37%), Gaps = 26/167 (15%)
Query: 34 LGLQPSAGSSFPRVFGLSRSPGPLVRVALGCYAVPGVRR---------GRQAGDLSPPRP 84
L Q +A +S P ++SPGP R+++ +P +RR GR+ +P
Sbjct: 140 LAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRLSLRGPRAGRERERAAPAGS 199
Query: 85 GSARTQLVAT--SAAQAAAAGRAQRVRRGLLRWRTT---ALGPARPRLRRPRHRLPGG-- 137
+R L ++ AA G + R G L + GP P RP P
Sbjct: 200 VISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPAGPPSPTSFRPYEVGPAARA 259
Query: 138 ---------SRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGP 175
S L G PAPG R+L A ARTGP
Sbjct: 260 PPAALWGRLSLHLYGLGGLRPAPG-ATPRDLCCLLQVDGEARARTGP 305
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 41.6 bits (96), Expect = 8e-04
Identities = 63/228 (27%), Positives = 73/228 (32%), Gaps = 45/228 (19%)
Query: 38 PSAGSSFPRVFGLSRSPGPLVRVALGCYAVPGVRR-----GRQAGDLSPPRPGSARTQLV 92
PS S P G + PG G PG+R GR +P G+
Sbjct: 635 PSGPSGLPGERGAAGIPG-----GKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGA 689
Query: 93 ATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPRLRRPRHRL---PGGSRRLPAPGPRAP 149
+A AAG A GPA PR P R P G P A
Sbjct: 690 TGDRGEAGAAGPA---------------GPAGPR-GSPGERGEVGPAGPNGFAGPAGAAG 733
Query: 150 APGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRGFR--------------PGLP 195
PG ER + G + TGP A A P G PG
Sbjct: 734 QPGAKGERGAK-GPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAA 792
Query: 196 VPTAPPGGLAAAAKDETSCAARERGA-SPRGDAGRVGRTRAVPSCGAP 242
T PPG + A + G PRGD G VGRT V + G P
Sbjct: 793 GRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPP 840
Score = 37.7 bits (86), Expect = 0.012
Identities = 45/136 (33%), Positives = 52/136 (38%), Gaps = 10/136 (7%)
Query: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRT-GAASIDRAPARTGPEDLA 179
GP+ R +PGG PG R GR+ GA TG A
Sbjct: 637 GPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEA 696
Query: 180 ARASTRRPRGFRPGLP-----VPTAPPGGLAAAAKDETSCAAR-ERGAS-PRGDAGRVGR 232
A P G R G P V A P G A A A+ ERGA P+G+ G VG
Sbjct: 697 GAAGPAGPAGPR-GSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGP 755
Query: 233 TRAVPSCGAPAVGTGP 248
T V + G PA GP
Sbjct: 756 TGPVGAAG-PAGPNGP 770
Score = 37.0 bits (84), Expect = 0.021
Identities = 35/120 (29%), Positives = 42/120 (35%), Gaps = 18/120 (15%)
Query: 137 GSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAARASTRRPRGFRPGLPV 196
G+R LP R APG GA D + GP A + P GF PG P
Sbjct: 214 GARGLPGERGRVGAPGPA-------GARGSDGSVGPVGP---AGPIGSAGPPGF-PGAPG 262
Query: 197 PTAPPGGLA-------AAAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAPAVGTGPG 249
P G + A + E P G+ G G T A + G P V PG
Sbjct: 263 PKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPG 322
Score = 29.6 bits (65), Expect = 3.3
Identities = 38/131 (29%), Positives = 44/131 (33%), Gaps = 25/131 (19%)
Query: 121 GPARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGPEDLAA 180
GPA P R LPG S GP P PG L TGA P G
Sbjct: 274 GPAGPAGPRGEVGLPGLS------GPVGP-PGNPGANGL-TGAKGAAGLPGVAGA----- 320
Query: 181 RASTRRPRGFRPGLPVPTAPPGGLAAAAKDETSCAARERG-ASPRGDAGRVGRTRAVPSC 239
PGLP P PG + AA E G A +G++G G +
Sbjct: 321 -----------PGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQ 369
Query: 240 GAPAVGTGPGR 250
G P G+
Sbjct: 370 GPPGPSGEEGK 380
Score = 28.5 bits (62), Expect = 7.4
Identities = 32/117 (27%), Positives = 39/117 (33%), Gaps = 14/117 (11%)
Query: 144 PGPRAPAPGKGRERELRTGAASIDRAPA----RTGPEDLAARASTRRPRGFRP-----GL 194
PGP G + E + P+ + GP A A P G R GL
Sbjct: 348 PGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGL 407
Query: 195 PVPTAPPGGLAAAAKDETSCAARERGASPRGDAGRVGRTRAVPSCGAPAVGTGPGRL 251
P G + S A RG P GDAGR G + G P PG +
Sbjct: 408 PGADGRAGVMGPPGSRGASGPAGVRG--PNGDAGRPGEPGLMGPRGLPG---SPGNI 459
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,844,990
Number of Sequences: 37866
Number of extensions: 932792
Number of successful extensions: 6976
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 902
Number of HSP's that attempted gapping in prelim test: 5589
Number of HSP's gapped (non-prelim): 2060
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.