Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC727978 Sequence: fasta or formatted (303aa) NCBI GI: 239742226
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {267aa} PREDICTED: hypothetical protein, partial
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         28           2
 C cysteine            3.3         10           1
 D aspartate           1.3          4           1
 E glutamate           2.0          6           1
 F phenylalanine       1.0          3           1
 G glycine             7.6         23           2
 H histidine           4.3         13           1
 I isoleucine          2.0          6           1
 K lysine              1.7          5           1
 L leucine            10.2         31           2
 M methionine          1.0          3           1
 N asparagine          3.6         11           1
 P proline            13.9         42           3
 Q glutamine           6.6         20           1
 R arginine            5.9         18           2
 S serine             13.5         41           2
 T threonine           7.6         23           2
 V valine              2.0          6           1
 W tryptophan          2.6          8           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC727978             0.725   PREDICTED: hypothetical protein, partial 
LOC100293485          0.481   PREDICTED: hypothetical protein 
LOC100289268          0.367   PREDICTED: hypothetical protein XP_002342358 
LOC100292957          0.142   PREDICTED: hypothetical protein 
LOC100290383          0.125   PREDICTED: hypothetical protein XP_002347044 
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
LOC100133756          0.028   PREDICTED: hypothetical protein, partial 
FLJ22184              0.028   PREDICTED: hypothetical protein LOC80164 
LOC100128719          0.028   PREDICTED: hypothetical protein, partial 
LOC100128719          0.028   PREDICTED: hypothetical protein, partial 
ATN1                  0.028   atrophin-1 
ATN1                  0.028   atrophin-1 
C2orf16               0.028   hypothetical protein LOC84226 
ZNF831                0.026   zinc finger protein 831 
MUC6                  0.026   mucin 6, gastric 
CECR2                 0.024   cat eye syndrome chromosome region, candidate 2 [Ho...
MUC2                  0.024   mucin 2 precursor 
LOC100134147          0.023   PREDICTED: hypothetical protein 
NACA                  0.021   nascent polypeptide-associated complex alpha subuni...
BUD13                 0.021   BUD13 homolog isoform 2 
MUC7                  0.019   mucin 7, secreted precursor 
MUC7                  0.019   mucin 7, secreted precursor 
MUC7                  0.019   mucin 7, secreted precursor 
ADAMTS7               0.019   ADAM metallopeptidase with thrombospondin type 1 mot...
BUD13                 0.018   BUD13 homolog isoform 1 
LOC100129826          0.016   PREDICTED: hypothetical protein LOC100129826 
DPCR1                 0.016   diffuse panbronchiolitis critical region 1 protein ...
BCL9L                 0.016   B-cell CLL/lymphoma 9-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press