Guide to the Human Genome
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Search of human proteins with 239742127

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742127 PREDICTED: hypothetical protein [Homo sapiens]
         (148 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753749 PREDICTED: hypothetical protein [Homo sapiens]           322   9e-89
gi|239748226 PREDICTED: hypothetical protein [Homo sapiens]           322   9e-89
gi|239742127 PREDICTED: hypothetical protein [Homo sapiens]           322   9e-89
gi|169165751 PREDICTED: hypothetical protein [Homo sapiens]           198   1e-51
gi|169166086 PREDICTED: hypothetical protein [Homo sapiens]           198   1e-51
gi|169165286 PREDICTED: hypothetical protein [Homo sapiens]           198   1e-51
gi|239754132 PREDICTED: hypothetical protein [Homo sapiens]            40   5e-04
gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo ...    40   5e-04
gi|239742644 PREDICTED: hypothetical protein XP_002342602 [Homo ...    40   5e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    40   0.001
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    40   0.001
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    40   0.001
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    40   0.001
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ...    39   0.002
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ...    39   0.002
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]         38   0.003
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]           37   0.006
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ...    37   0.006
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ...    37   0.006
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ...    35   0.023
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ...    35   0.023
gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens]        35   0.023
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi...    35   0.023
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi...    35   0.023
gi|239757751 PREDICTED: hypothetical protein [Homo sapiens]            35   0.030
gi|13994190 frizzled 8 [Homo sapiens]                                  35   0.030
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              35   0.030
gi|239757315 PREDICTED: hypothetical protein [Homo sapiens]            34   0.039
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]            34   0.039
gi|239751820 PREDICTED: hypothetical protein [Homo sapiens]            34   0.039

>gi|239753749 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score =  322 bits (824), Expect = 9e-89
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60
           MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES
Sbjct: 1   MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60

Query: 61  CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120
           CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ
Sbjct: 61  CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120

Query: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148
           GHPRVAPQGRCKARAESGRARALLTSMA
Sbjct: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148


>gi|239748226 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score =  322 bits (824), Expect = 9e-89
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60
           MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES
Sbjct: 1   MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60

Query: 61  CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120
           CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ
Sbjct: 61  CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120

Query: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148
           GHPRVAPQGRCKARAESGRARALLTSMA
Sbjct: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148


>gi|239742127 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score =  322 bits (824), Expect = 9e-89
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60
           MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES
Sbjct: 1   MGRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRES 60

Query: 61  CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120
           CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ
Sbjct: 61  CGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQ 120

Query: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148
           GHPRVAPQGRCKARAESGRARALLTSMA
Sbjct: 121 GHPRVAPQGRCKARAESGRARALLTSMA 148


>gi|169165751 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score =  198 bits (504), Expect = 1e-51
 Identities = 100/138 (72%), Positives = 107/138 (77%)

Query: 11  VQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRESCGSQGAPRGR 70
           +QGHSHQAQHL ARGPW +LR PPQPTA RAS+ WHRSGPQ VAL RR SCGSQ APRG+
Sbjct: 49  IQGHSHQAQHLPARGPWRVLRRPPQPTAPRASDAWHRSGPQRVALTRRGSCGSQCAPRGK 108

Query: 71  RPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVAPQGR 130
           R P RPA  A  GSARP G C A PRIR+GSPG H+SASAS  GGS DWQG PR   Q  
Sbjct: 109 RQPLRPAPRAARGSARPLGFCPACPRIRRGSPGVHRSASASAGGGSGDWQGRPRGDHQRG 168

Query: 131 CKARAESGRARALLTSMA 148
           C A+AESGRAR LLTSMA
Sbjct: 169 CGAQAESGRARPLLTSMA 186


>gi|169166086 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score =  198 bits (504), Expect = 1e-51
 Identities = 100/138 (72%), Positives = 107/138 (77%)

Query: 11  VQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRESCGSQGAPRGR 70
           +QGHSHQAQHL ARGPW +LR PPQPTA RAS+ WHRSGPQ VAL RR SCGSQ APRG+
Sbjct: 49  IQGHSHQAQHLPARGPWRVLRRPPQPTAPRASDAWHRSGPQRVALTRRGSCGSQCAPRGK 108

Query: 71  RPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVAPQGR 130
           R P RPA  A  GSARP G C A PRIR+GSPG H+SASAS  GGS DWQG PR   Q  
Sbjct: 109 RQPLRPAPRAARGSARPLGFCPACPRIRRGSPGVHRSASASAGGGSGDWQGRPRGDHQRG 168

Query: 131 CKARAESGRARALLTSMA 148
           C A+AESGRAR LLTSMA
Sbjct: 169 CGAQAESGRARPLLTSMA 186


>gi|169165286 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score =  198 bits (504), Expect = 1e-51
 Identities = 100/138 (72%), Positives = 107/138 (77%)

Query: 11  VQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRSGPQHVALIRRESCGSQGAPRGR 70
           +QGHSHQAQHL ARGPW +LR PPQPTA RAS+ WHRSGPQ VAL RR SCGSQ APRG+
Sbjct: 49  IQGHSHQAQHLPARGPWRVLRRPPQPTAPRASDAWHRSGPQRVALTRRGSCGSQCAPRGK 108

Query: 71  RPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVAPQGR 130
           R P RPA  A  GSARP G C A PRIR+GSPG H+SASAS  GGS DWQG PR   Q  
Sbjct: 109 RQPLRPAPRAARGSARPLGFCPACPRIRRGSPGVHRSASASAGGGSGDWQGRPRGDHQRG 168

Query: 131 CKARAESGRARALLTSMA 148
           C A+AESGRAR LLTSMA
Sbjct: 169 CGAQAESGRARPLLTSMA 186


>gi|239754132 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 217

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 33/91 (36%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 58  RESCGSQGAPRGRRPPPR------PAVPADHGSARPPGCCLASPRIRQGSPGAHQSASAS 111
           R S  S    R   PPPR      PA+  D G ARP       PR R G PG H + S  
Sbjct: 47  RASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLV 106

Query: 112 ERGGSWDWQG----HPRVAPQGRCKARAESG 138
            RG      G    H RV   G   + A SG
Sbjct: 107 RRGLLRSCGGHLTPHARVLSSGGTASAARSG 137


>gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo
           sapiens]
          Length = 217

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 33/91 (36%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 58  RESCGSQGAPRGRRPPPR------PAVPADHGSARPPGCCLASPRIRQGSPGAHQSASAS 111
           R S  S    R   PPPR      PA+  D G ARP       PR R G PG H + S  
Sbjct: 47  RASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLV 106

Query: 112 ERGGSWDWQG----HPRVAPQGRCKARAESG 138
            RG      G    H RV   G   + A SG
Sbjct: 107 RRGLLRSCGGHLTPHARVLSSGGTASAARSG 137


>gi|239742644 PREDICTED: hypothetical protein XP_002342602 [Homo
           sapiens]
          Length = 217

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 33/91 (36%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 58  RESCGSQGAPRGRRPPPR------PAVPADHGSARPPGCCLASPRIRQGSPGAHQSASAS 111
           R S  S    R   PPPR      PA+  D G ARP       PR R G PG H + S  
Sbjct: 47  RASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLV 106

Query: 112 ERGGSWDWQG----HPRVAPQGRCKARAESG 138
            RG      G    H RV   G   + A SG
Sbjct: 107 RRGLLRSCGGHLTPHARVLSSGGTASAARSG 137


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 62  GSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQG 121
           G++G    R  P +P  P + G   PPG C+  PR  QG PG +       R G    +G
Sbjct: 783 GNEGLDGPRGDPGQPGPPGEQG---PPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKG 839

Query: 122 HPRVAPQGRCKARAESG 138
            P +    R     E+G
Sbjct: 840 DPGIPGLDRSGFPGETG 856


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 62  GSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQG 121
           G++G    R  P +P  P + G   PPG C+  PR  QG PG +       R G    +G
Sbjct: 783 GNEGLDGPRGDPGQPGPPGEQG---PPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKG 839

Query: 122 HPRVAPQGRCKARAESG 138
            P +    R     E+G
Sbjct: 840 DPGIPGLDRSGFPGETG 856


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1637

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 62  GSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQG 121
           G++G    R  P +P  P + G   PPG C+  PR  QG PG +       R G    +G
Sbjct: 783 GNEGLDGPRGDPGQPGPPGEQG---PPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKG 839

Query: 122 HPRVAPQGRCKARAESG 138
            P +    R     E+G
Sbjct: 840 DPGIPGLDRSGFPGETG 856


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1670

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 62  GSQGAPRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQG 121
           G++G    R  P +P  P + G   PPG C+  PR  QG PG +       R G    +G
Sbjct: 783 GNEGLDGPRGDPGQPGPPGEQG---PPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKG 839

Query: 122 HPRVAPQGRCKARAESG 138
            P +    R     E+G
Sbjct: 840 DPGIPGLDRSGFPGETG 856


>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
           sapiens]
          Length = 400

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 58  RESCGSQGAPRGRRP---PPRPAVPADHGSARPPG--CCLASPRIRQGSPGAHQSASASE 112
           RE+  +Q   R RRP    PRPA+P    SA  P   C LA  R R G+    + A A E
Sbjct: 212 REAAQAQTGLRRRRPLELVPRPALP----SAPSPRIRCFLAPGRSRVGAALTEEQA-AGE 266

Query: 113 RGGSWDWQGHPRVAPQGRCKAR---AESGRAR 141
                 W+  P   P+G C AR     +GRAR
Sbjct: 267 AAARGLWRRKPAPCPRGACAARLGGRGTGRAR 298


>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
           sapiens]
          Length = 400

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 58  RESCGSQGAPRGRRP---PPRPAVPADHGSARPPG--CCLASPRIRQGSPGAHQSASASE 112
           RE+  +Q   R RRP    PRPA+P    SA  P   C LA  R R G+    + A A E
Sbjct: 212 REAAQAQTGLRRRRPLELVPRPALP----SAPSPRIRCFLAPGRSRVGAALTEEQA-AGE 266

Query: 113 RGGSWDWQGHPRVAPQGRCKAR---AESGRAR 141
                 W+  P   P+G C AR     +GRAR
Sbjct: 267 AAARGLWRRKPAPCPRGACAARLGGRGTGRAR 298


>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
          Length = 370

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 13  GHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHRS----GPQHVALIRRESCGSQGAPR 68
           G   + + L A GP P    PP P  A A      S         +L++  +  + G  R
Sbjct: 25  GSRREPRSLPAGGPAPRRTAPPPPGHASAGPAAMSSHIAKSESKTSLLKAAAAAASGGSR 84

Query: 69  GRRPPPR--PAVPADHGSARPPGCCLASPRIRQGSPGAHQ---SASASERGGSWDWQGHP 123
             R  P   P +P    S R PG C A+P+   G P + +     +  E G     +G  
Sbjct: 85  APRHGPARDPGLP----SRRLPGSCPATPQ-SSGDPSSRRPLCRPAPREEGA----RGSQ 135

Query: 124 RVAPQGRCKAR 134
           RV PQ  C+ R
Sbjct: 136 RVLPQAHCRPR 146


>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
          Length = 333

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 41/132 (31%), Positives = 48/132 (36%), Gaps = 17/132 (12%)

Query: 4   PPTPSCRVQGHSHQAQHLLARGPWPLLRW-PPQPTAARASEIWHRSGPQHVALIRRESC- 61
           PP       G  H+ +      P    RW PP P AA A+   HR  P         SC 
Sbjct: 96  PPPLGAATAGSRHRQK---PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH 152

Query: 62  -GSQGAPRGRRPPPRPA---VPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSW 117
             S G+   RR P  PA   VP      R P      P   QG  G+   A  S RG   
Sbjct: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREP----TPPAGPQGFAGSF-CAEGSRRGAEV 207

Query: 118 DWQGHPRVAPQG 129
            W    ++ PQG
Sbjct: 208 GW---GKLEPQG 216


>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
           sapiens]
          Length = 333

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 41/132 (31%), Positives = 48/132 (36%), Gaps = 17/132 (12%)

Query: 4   PPTPSCRVQGHSHQAQHLLARGPWPLLRW-PPQPTAARASEIWHRSGPQHVALIRRESC- 61
           PP       G  H+ +      P    RW PP P AA A+   HR  P         SC 
Sbjct: 96  PPPLGAATAGSRHRQK---PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH 152

Query: 62  -GSQGAPRGRRPPPRPA---VPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSW 117
             S G+   RR P  PA   VP      R P      P   QG  G+   A  S RG   
Sbjct: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREP----TPPAGPQGFAGSF-CAEGSRRGAEV 207

Query: 118 DWQGHPRVAPQG 129
            W    ++ PQG
Sbjct: 208 GW---GKLEPQG 216


>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
           sapiens]
          Length = 333

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 41/132 (31%), Positives = 48/132 (36%), Gaps = 17/132 (12%)

Query: 4   PPTPSCRVQGHSHQAQHLLARGPWPLLRW-PPQPTAARASEIWHRSGPQHVALIRRESC- 61
           PP       G  H+ +      P    RW PP P AA A+   HR  P         SC 
Sbjct: 96  PPPLGAATAGSRHRQK---PPSPGSRHRWEPPPPGAATATGSRHRREPPSPGATTAGSCH 152

Query: 62  -GSQGAPRGRRPPPRPA---VPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSW 117
             S G+   RR P  PA   VP      R P      P   QG  G+   A  S RG   
Sbjct: 153 LRSSGSTGTRRAPSHPAALQVPYTREGPREP----TPPAGPQGFAGSF-CAEGSRRGAEV 207

Query: 118 DWQGHPRVAPQG 129
            W    ++ PQG
Sbjct: 208 GW---GKLEPQG 216


>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
           sapiens]
          Length = 408

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 66  APRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRV 125
           APR R+P P  AVP   GS R P   L S R R+G PG H   S S R      +G   +
Sbjct: 81  APRARQPVPHRAVPR-QGSLREP---LPSRRGRRGPPG-HAPPSPSLRR-----RGARAL 130

Query: 126 APQGRCKARAESGRARAL 143
            P    +ARA   R   L
Sbjct: 131 QPSAAARARARVPRGLRL 148


>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
           sapiens]
          Length = 408

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 66  APRGRRPPPRPAVPADHGSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRV 125
           APR R+P P  AVP   GS R P   L S R R+G PG H   S S R      +G   +
Sbjct: 81  APRARQPVPHRAVPR-QGSLREP---LPSRRGRRGPPG-HAPPSPSLRR-----RGARAL 130

Query: 126 APQGRCKARAESGRARAL 143
            P    +ARA   R   L
Sbjct: 131 QPSAAARARARVPRGLRL 148


>gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens]
          Length = 439

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 58  RESCGSQGAPRGRRPPPRPAVPADH-GSARPPGCCLASPRIRQGSPGAHQSASASERGGS 116
           R+S    G P   R PPR   PA   GSA   G         QG PG H+   A  R GS
Sbjct: 369 RDSSPCVGLPAASRGPPRAGAPASRTGSATSAGTVG-----EQGRPGTHERPGAKPRAGS 423


>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
           sapiens]
          Length = 678

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 33  PPQPTAA--RASEIWHRSGPQHVALIRRESCGSQGAPRGRR--------PPPRPAVPADH 82
           PP P AA  RA+E+     P        E      APR R         PPP P  P   
Sbjct: 49  PPAPGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRP 108

Query: 83  GSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVAPQG 129
             A P       PR    SPGA +S    ++ GS  +  HPR   +G
Sbjct: 109 PPAAPSPPAAPGPRGGGASPGARRS-DFLQKTGSNSFTVHPRGLHRG 154



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 39  ARASEIWHRSGPQHVALIRR---ESCGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASP 95
           AR S+   ++G     +  R      G++    G   P   A PA+  +  PPG     P
Sbjct: 130 ARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKP 189

Query: 96  RIRQGSPGAHQSAS 109
           ++  G P  H   S
Sbjct: 190 KVESGDPSLHPPPS 203


>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 35.0 bits (79), Expect = 0.023
 Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 33  PPQPTAA--RASEIWHRSGPQHVALIRRESCGSQGAPRGRR--------PPPRPAVPADH 82
           PP P AA  RA+E+     P        E      APR R         PPP P  P   
Sbjct: 49  PPAPGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRP 108

Query: 83  GSARPPGCCLASPRIRQGSPGAHQSASASERGGSWDWQGHPRVAPQG 129
             A P       PR    SPGA +S    ++ GS  +  HPR   +G
Sbjct: 109 PPAAPSPPAAPGPRGGGASPGARRS-DFLQKTGSNSFTVHPRGLHRG 154



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 39  ARASEIWHRSGPQHVALIRR---ESCGSQGAPRGRRPPPRPAVPADHGSARPPGCCLASP 95
           AR S+   ++G     +  R      G++    G   P   A PA+  +  PPG     P
Sbjct: 130 ARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKP 189

Query: 96  RIRQGSPGAHQSAS 109
           ++  G P  H   S
Sbjct: 190 KVESGDPSLHPPPS 203


>gi|239757751 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 327

 Score = 34.7 bits (78), Expect = 0.030
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 2   GRPPTPSCRVQGHSHQAQHLLARGPWPLLRWPPQPTAARASEIWHR-------SGPQHVA 54
           G P TP  R          + ARG W +     QP+  +   +W R       SGP    
Sbjct: 55  GVPHTPGTRELNTRCLKFEISARGRWAVFHH--QPSTPKGRCVWRRAGAGIVRSGPGLHG 112

Query: 55  LIRRESCGSQGAPRGRRPPPR-PAVPADHGSARPPG 89
            +  ++ G++   R RR PPR P++P   G A+ PG
Sbjct: 113 ALGPDTGGAKLRVRPRRTPPRDPSLPV-LGGAKEPG 147


>gi|13994190 frizzled 8 [Homo sapiens]
          Length = 694

 Score = 34.7 bits (78), Expect = 0.030
 Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 28/158 (17%)

Query: 3   RPPTPSCRVQGHSHQAQHLLARGPWPLLR-----WPPQPTAARASEIWHRSGPQHVALI- 56
           + P P CR      +A      G  PL+R     WP +    R  E   +  P  + +  
Sbjct: 101 KKPLPPCRSVCERAKA------GCAPLMRQYGFAWPDRMRCDRLPE---QGNPDTLCMDY 151

Query: 57  -RRESCGSQGAPRGRRPPPRPAV--PADHGSARPPGCCLASPRIRQG--SPGAHQSASAS 111
            R +   +  +P  R PPP P    P+  G  RPPG   A P  R G    G   +A+  
Sbjct: 152 NRTDLTTAAPSPPRRLPPPPPGEQPPSGSGHGRPPG---ARPPHRGGGRGGGGGDAAAPP 208

Query: 112 ERGGSWDWQGHPRVAPQGRCKARAESG-RARALLTSMA 148
            RGG     G  +  P G   A  E G + RA + S++
Sbjct: 209 ARGGG----GGGKARPPGGGAAPCEPGCQCRAPMVSVS 242


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 34.7 bits (78), Expect = 0.030
 Identities = 42/165 (25%), Positives = 58/165 (35%), Gaps = 45/165 (27%)

Query: 14  HSHQAQHLLARGPWPLLRWPPQPTAARASEIWHR--SGPQHVALIRRESCGSQGAPRGRR 71
           H+ Q + + AR  W L +        R S +W    +G +  +        S G P G  
Sbjct: 413 HASQGERVAARKRWGLAQH------VRCSGLWGHGTAGRERCSQDSASPASSTGLPEGSE 466

Query: 72  PPPR--PAVPADH-GSARP-----------------PGCCL-------------ASPRIR 98
           P     P  P D   SA P                 PG C+              +PR R
Sbjct: 467 PESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCIDGAGLGGPEQGGRLTPRAR 526

Query: 99  -QGSPGAHQSASASERGGSWDWQGHPRVAPQGRCKARAESGRARA 142
            +    +  SAS     GS +W G P+  P    KARAE+ +  A
Sbjct: 527 SEEGASSDSSASTGSHEGSSEWGGRPQGCPG---KARAETSQQEA 568


>gi|239757315 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 144

 Score = 34.3 bits (77), Expect = 0.039
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 57  RRESCGSQGAPRGRRPPPRPAVPADHGSARP-PGCCLASPRIRQGSPGAHQSASAS-ERG 114
           R +  G + A    +PPP P VPA   S +P P     S  +R   P + + AS    R 
Sbjct: 60  RPQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRA 119

Query: 115 GSWDWQGHPRVAPQG 129
             W   GHP+ A +G
Sbjct: 120 RRW---GHPQDAQKG 131


>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 146

 Score = 34.3 bits (77), Expect = 0.039
 Identities = 35/105 (33%), Positives = 42/105 (40%), Gaps = 14/105 (13%)

Query: 36  PTAARASEIWHRSGPQHVALIRRESCGSQ---------GAPRGRRPPPRPAVPADHGSAR 86
           P  AR      R+  +H+   RR SC S+         GAP  R PPPRP    + G AR
Sbjct: 17  PPLARRLPGHQRASGRHLRR-RRGSCSSRRLSGPGRRAGAPTPRGPPPRPRSFPETGPAR 75

Query: 87  PPGCCLASPRIRQGSPGAHQSASASERG---GSWDWQGHPRVAPQ 128
                  S R R  S G     +A  RG   G   W    R AP+
Sbjct: 76  LGAAAGPSSRARP-SRGERPWLAAQLRGLQVGQCCWGHRRRSAPE 119


>gi|239751820 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 144

 Score = 34.3 bits (77), Expect = 0.039
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 57  RRESCGSQGAPRGRRPPPRPAVPADHGSARP-PGCCLASPRIRQGSPGAHQSASAS-ERG 114
           R +  G + A    +PPP P VPA   S +P P     S  +R   P + + AS    R 
Sbjct: 60  RPQKAGPRSAIAPPQPPPAPPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRA 119

Query: 115 GSWDWQGHPRVAPQG 129
             W   GHP+ A +G
Sbjct: 120 RRW---GHPQDAQKG 131


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,871,112
Number of Sequences: 37866
Number of extensions: 573781
Number of successful extensions: 4511
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 457
Number of HSP's that attempted gapping in prelim test: 3761
Number of HSP's gapped (non-prelim): 1169
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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