Guide to the Human Genome
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Name: LOC344595 Sequence: fasta or formatted (347aa) NCBI GI: 239742087
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {347aa} PREDICTED: hypothetical protein
alt mRNA {347aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         31           2
 C cysteine            2.6          9           1
 D aspartate           2.3          8           1
 E glutamate           4.9         17           2
 F phenylalanine       3.7         13           1
 G glycine             9.2         32           2
 H histidine           3.2         11           1
 I isoleucine          3.5         12           1
 K lysine              3.7         13           2
 L leucine             8.9         31           2
 M methionine          1.7          6           1
 N asparagine          2.6          9           1
 P proline             5.8         20           2
 Q glutamine           4.3         15           2
 R arginine           11.8         41           2
 S serine             10.1         35           3
 T threonine           7.5         26           3
 V valine              3.5         12           2
 W tryptophan          1.4          5           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC344595             1.000   PREDICTED: hypothetical protein 
LOC344595             1.000   PREDICTED: hypothetical protein 
FLG                   0.016   filaggrin 
CCDC88C               0.012   DVL-binding protein DAPLE 
SRRM2                 0.012   splicing coactivator subunit SRm300 
ATAD2B                0.010   ATPase family, AAA domain containing 2B 
TPRA1                 0.010   G protein-coupled receptor 175 isoform 2 
LOC731282             0.010   PREDICTED: hypothetical protein 
LOC731282             0.010   PREDICTED: hypothetical protein 
IRF2BP1               0.010   interferon regulatory factor 2 binding protein 1 [Ho...
LOC728650             0.009   PREDICTED: hypothetical protein 
LOC728650             0.009   PREDICTED: hypothetical protein 
LOC100129500          0.007   PREDICTED: hypothetical protein isoform 1 
LOC100129500          0.007   PREDICTED: hypothetical protein isoform 2 
LOC100291914          0.007   PREDICTED: hypothetical protein XP_002345991 
LOC100129500          0.007   PREDICTED: hypothetical protein 
LOC100290611          0.007   PREDICTED: hypothetical protein XP_002346841 
LOC100287467          0.007   PREDICTED: hypothetical protein XP_002342727 
FLJ46321              0.007   hypothetical protein LOC389763 
LOC100129500          0.007   PREDICTED: hypothetical protein 
ANK3                  0.007   ankyrin 3 isoform 1 
LRP12                 0.007   low density lipoprotein-related protein 12 isoform ...
LRP12                 0.007   low density lipoprotein-related protein 12 isoform a ...
RLIM                  0.007   ring finger protein, LIM domain interacting 
RLIM                  0.007   ring finger protein, LIM domain interacting 
DLX3                  0.007   distal-less homeobox 3 
NFKBIE                0.007   nuclear factor of kappa light polypeptide gene enhan...
LOC100292035          0.007   PREDICTED: hypothetical protein XP_002345623 
LOC100288496          0.007   PREDICTED: hypothetical protein XP_002342747 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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