Guide to the Human Genome
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Name: LOC100129500 Sequence: fasta or formatted (198aa) NCBI GI: 169214343
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {198aa} PREDICTED: hypothetical protein
alt mRNA {198aa} PREDICTED: hypothetical protein isoform 2
alt mRNA {198aa} PREDICTED: hypothetical protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.1         26           2
 C cysteine            6.1         12           1
 D aspartate           1.0          2           1
 E glutamate           1.0          2           1
 F phenylalanine       1.0          2           1
 G glycine             2.0          4           1
 H histidine           0.0          0           0
 I isoleucine          1.5          3           1
 K lysine              0.5          1           1
 L leucine             5.1         10           2
 M methionine          2.0          4           1
 N asparagine          0.5          1           1
 P proline             6.6         13           1
 Q glutamine           1.0          2           1
 R arginine           21.7         43           2
 S serine             23.2         46           4
 T threonine           6.6         13           1
 V valine              2.5          5           1
 W tryptophan          3.5          7           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129500          1.000   PREDICTED: hypothetical protein isoform 1 
LOC100129500          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100129500          0.997   PREDICTED: hypothetical protein 
SRRM2                 0.067   splicing coactivator subunit SRm300 
LOC729815             0.056   PREDICTED: hypothetical protein 
SON                   0.051   SON DNA-binding protein isoform F 
SON                   0.051   SON DNA-binding protein isoform B 
LOC729815             0.048   PREDICTED: hypothetical protein 
DTL                   0.040   denticleless homolog 
SFRS16                0.040   splicing factor, arginine/serine-rich 16 
ZRANB2                0.040   zinc finger protein 265 isoform 1 
LOC100287397          0.037   PREDICTED: hypothetical protein XP_002343164 
KIAA1853              0.035   KIAA1853 protein 
LOC100292122          0.032   PREDICTED: hypothetical protein XP_002345138 
LOC100293501          0.032   PREDICTED: hypothetical protein 
LOC100291178          0.032   PREDICTED: hypothetical protein XP_002347544 
LOC100286986          0.032   PREDICTED: hypothetical protein XP_002344191 
LOC100289466          0.032   PREDICTED: hypothetical protein XP_002342181 
SCAF1                 0.032   SR-related CTD-associated factor 1 
SFRS8                 0.032   splicing factor, arginine/serine-rich 8 
ZRANB2                0.029   zinc finger protein 265 isoform 2 
PANK2                 0.029   pantothenate kinase 2 isoform 1 preproprotein 
ARL6IP4               0.029   SRp25 nuclear protein isoform 4 
ARL6IP4               0.029   SRp25 nuclear protein isoform 2 
TRA2B                 0.027   splicing factor, arginine/serine-rich 10 
C19orf29              0.027   chromosome 19 open reading frame 29 
C19orf29              0.027   chromosome 19 open reading frame 29 
CHERP                 0.027   calcium homeostasis endoplasmic reticulum protein [...
SRRM1                 0.027   serine/arginine repetitive matrix 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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