Guide to the Human Genome
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Search of human proteins with 239741918

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo
sapiens]
         (319 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo ...   677   0.0  
gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo ...   677   0.0  
gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo ...   593   e-170
gi|21359951 RNA binding motif protein 42 [Homo sapiens]                44   2e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    40   0.003
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             38   0.014
gi|27886539 nuclear factor of activated T-cells, cytoplasmic, ca...    37   0.023
gi|27886541 nuclear factor of activated T-cells, cytoplasmic, ca...    37   0.023
gi|209862843 nuclear factor of activated T-cells, cytoplasmic, c...    37   0.023
gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens]           37   0.023
gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens]            37   0.023
gi|118402590 myosin XV [Homo sapiens]                                  37   0.030
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]            37   0.030
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    36   0.040
gi|8924248 SRY-box 18 [Homo sapiens]                                   36   0.040
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      36   0.052
gi|195947369 junction-mediating and regulatory protein [Homo sap...    36   0.052
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    35   0.068
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    35   0.068
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ...    35   0.088
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ...    35   0.088
gi|237757326 synaptojanin 1 isoform d [Homo sapiens]                   35   0.088
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9...    35   0.12 
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9...    35   0.12 
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]          35   0.12 
gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]            34   0.15 
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        34   0.15 
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     34   0.20 
gi|226823326 methenyltetrahydrofolate synthetase domain containi...    33   0.26 
gi|226823324 methenyltetrahydrofolate synthetase domain containi...    33   0.26 

>gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo
           sapiens]
          Length = 319

 Score =  677 bits (1747), Expect = 0.0
 Identities = 319/319 (100%), Positives = 319/319 (100%)

Query: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
           MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS
Sbjct: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60

Query: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
           ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG
Sbjct: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120

Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
           WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV
Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180

Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
           GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS
Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240

Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300
           IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE
Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300

Query: 301 DGKERALRAPVRGPWLRPF 319
           DGKERALRAPVRGPWLRPF
Sbjct: 301 DGKERALRAPVRGPWLRPF 319


>gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo
           sapiens]
          Length = 319

 Score =  677 bits (1747), Expect = 0.0
 Identities = 319/319 (100%), Positives = 319/319 (100%)

Query: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
           MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS
Sbjct: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60

Query: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
           ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG
Sbjct: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120

Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
           WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV
Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180

Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
           GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS
Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240

Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300
           IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE
Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300

Query: 301 DGKERALRAPVRGPWLRPF 319
           DGKERALRAPVRGPWLRPF
Sbjct: 301 DGKERALRAPVRGPWLRPF 319


>gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo
           sapiens]
          Length = 287

 Score =  593 bits (1529), Expect = e-170
 Identities = 287/319 (89%), Positives = 287/319 (89%), Gaps = 32/319 (10%)

Query: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
           MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS
Sbjct: 1   MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60

Query: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
           ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG
Sbjct: 61  ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120

Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
           WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV
Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180

Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
           GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS
Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240

Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300
           IRPGPEPGCQASRVIKGGLGPFIEVEP                                E
Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEP--------------------------------E 268

Query: 301 DGKERALRAPVRGPWLRPF 319
           DGKERALRAPVRGPWLRPF
Sbjct: 269 DGKERALRAPVRGPWLRPF 287


>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
          Length = 480

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 63/219 (28%), Positives = 77/219 (35%), Gaps = 31/219 (14%)

Query: 106 AAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQ 165
           A P  +AL     A  G   P   GP +  PP  R     G   GS   L   +PPL  +
Sbjct: 178 AGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAP---GPPLGSMAAL---RPPLE-E 230

Query: 166 PAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVF 225
           PA   E     G  +G GL E+       A     ASA   VG          +G  +  
Sbjct: 231 PAAPREL----GLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPL 286

Query: 226 TALMPLNLFPGDPGSIRPGPEPGCQASRVIKGGLGPF-----IEVEPETGECSASAAPPA 280
              MPL           P PEP      V++G L P      + + P          PP 
Sbjct: 287 ALAMPL-----------PEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRP--PRPEPPP 333

Query: 281 GQAGREVG-PAGHDHRVGKPEDGKERALRAPVRGPWLRP 318
           G    EV  P G D + GKPE  K R +R      W  P
Sbjct: 334 GLMALEVPEPLGEDKKKGKPEKLK-RCIRTAAGSSWEDP 371


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 57/211 (27%), Positives = 73/211 (34%), Gaps = 33/211 (15%)

Query: 108 PACLALPGLLGAGWGACRPALYGPSLC------APPSLRGSAEDGGRSGSCTRLPRA--- 158
           PA  A PG    G G  RP    P         APP+ +      G +GSC  +P A   
Sbjct: 91  PAGRARPG----GGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAV 146

Query: 159 ------QPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFV 212
                  P    +PAG +   A+ G   GPG G    GP P     A   A + + G   
Sbjct: 147 AAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP---GPGPGPGKPAGPGAAQTLNG--- 200

Query: 213 RQAALALGLEVVFTALMPLNLFPGDPGSIRPGPEPGCQASRV----IKGGLGPFIEVEPE 268
             AAL   L     A   ++L    P ++ P P+P    + +      G   P     P 
Sbjct: 201 -SAAL---LNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPS 256

Query: 269 TGECSASAAPPAGQAGREVGPAGHDHRVGKP 299
                A AAP A        PA      G P
Sbjct: 257 PPAAPAPAAPAAAPPPPPPAPATLARPPGHP 287



 Score = 37.0 bits (84), Expect = 0.023
 Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 74  AGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSL 133
           A  P P  PS            + P    P P APA LA P    AG     PA+  P+ 
Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAAAPP----PPPPAPATLARPPGHPAGPPTAAPAVPPPA- 301

Query: 134 CAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRP 193
                   +A++GG +G+      A  P    PAG S Q   G  +  P  G +   P+ 
Sbjct: 302 --------AAQNGGSAGAAP----APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKR 349

Query: 194 RAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
                  A+      G     A++ +G  +      P  + P  PG+
Sbjct: 350 VVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGT 396


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 53/189 (28%), Positives = 70/189 (37%), Gaps = 23/189 (12%)

Query: 118 GAGWGAC--------RPALYGP---SLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQ- 165
           G+GWG+         R   +G    S  +PP    S     R  +    P   PP R + 
Sbjct: 305 GSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPT--PPARGKE 362

Query: 166 ---PAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLE 222
              P  +   + +GG + G G G R    R R    +SASA    G    R A       
Sbjct: 363 SPSPRSAPSSQGRGGRAAG-GAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSR 421

Query: 223 VVFTALMPLNLFPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQ 282
            +  A    +   G  G+  PGPEPG +      GG G   +  P      AS +P  G 
Sbjct: 422 SLSRARSSSDSGSGR-GAPGPGPEPGSERGH---GGHGKRAKERPPRAR-PASTSPSPGA 476

Query: 283 AGREVGPAG 291
            GR  GP G
Sbjct: 477 HGRRGGPEG 485


>gi|27886539 nuclear factor of activated T-cells, cytoplasmic,
           calcineurin-dependent 2 isoform B [Homo sapiens]
          Length = 921

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 238 PGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAG 291
           PG+ RPGP P  Q  R+  G     I+ +  T + +A   PP     +EV PAG
Sbjct: 839 PGTTRPGPPPVSQGQRLSPGSYPTVIQQQNATSQRAAKNGPPVSDQ-KEVLPAG 891


>gi|27886541 nuclear factor of activated T-cells, cytoplasmic,
           calcineurin-dependent 2 isoform C [Homo sapiens]
          Length = 925

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 238 PGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAG 291
           PG+ RPGP P  Q  R+  G     I+ +  T + +A   PP     +EV PAG
Sbjct: 839 PGTTRPGPPPVSQGQRLSPGSYPTVIQQQNATSQRAAKNGPPVSDQ-KEVLPAG 891


>gi|209862843 nuclear factor of activated T-cells, cytoplasmic,
           calcineurin-dependent 2 isoform D [Homo sapiens]
          Length = 901

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 238 PGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAG 291
           PG+ RPGP P  Q  R+  G     I+ +  T + +A   PP     +EV PAG
Sbjct: 819 PGTTRPGPPPVSQGQRLSPGSYPTVIQQQNATSQRAAKNGPPVSDQ-KEVLPAG 871


>gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens]
          Length = 748

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 80  RRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSL 139
           RR S  +L  A++Q  ++PLR   +    A  A    L     A   A  GP L     L
Sbjct: 635 RRDSGVYLCAAVEQGFTQPLRRLSLHVLSATQA--ERLARAEEAAPAAPPGPKLWYRDFL 692

Query: 140 RGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRA 195
           +     GG S +  R+ R QP L+  P  S  +          G   R H P PRA
Sbjct: 693 QLVEPGGGGSANSLRMCRPQPALQSLPLESRRK----------GRNRRTHAPEPRA 738


>gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens]
          Length = 749

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 80  RRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSL 139
           RR S  +L  A++Q  ++PLR   +    A  A    L     A   A  GP L     L
Sbjct: 636 RRDSGVYLCAAVEQGFTQPLRRLSLHVLSATQA--ERLARAEEAAPAAPPGPKLWYRDFL 693

Query: 140 RGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRA 195
           +     GG S +  R+ R QP L+  P  S  +          G   R H P PRA
Sbjct: 694 QLVEPGGGGSANSLRMCRPQPALQSLPLESRRK----------GRNRRTHAPEPRA 739


>gi|118402590 myosin XV [Homo sapiens]
          Length = 3530

 Score = 36.6 bits (83), Expect = 0.030
 Identities = 37/135 (27%), Positives = 43/135 (31%), Gaps = 25/135 (18%)

Query: 59  PSASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLG 118
           PS+         P L+G PRP  P  +             LR  P P A      P    
Sbjct: 670 PSSGPPPAPPLSPALSGLPRPASPYGS-------------LRRHPPPWAAPAHVPPAPQA 716

Query: 119 AGWGACRPALYGPS-----LCAP---PSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSS 170
           + W    P    P      L  P   PS RGS   G   G     PRA     W P  S 
Sbjct: 717 SWWAFVEPPAVSPEVPPDLLAFPGPRPSFRGSRRRGAAFGFPGASPRASRRRAWSPLASP 776

Query: 171 EQEAQGGWSVGPGLG 185
           +   +      PGLG
Sbjct: 777 QPSLRS----SPGLG 787


>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 316

 Score = 36.6 bits (83), Expect = 0.030
 Identities = 62/229 (27%), Positives = 78/229 (34%), Gaps = 30/229 (13%)

Query: 10  PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67
           PGA+   A G G   G G        R    G+  R    R C   P  C  S+      
Sbjct: 84  PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139

Query: 68  HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
           H  P L G     R S   L+          +  RP PA PA L +     AG  A R  
Sbjct: 140 HRWPQLRGREADPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190

Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187
              P LC+     G+A  G R    TR     PP    P   S    +GG  V    G R
Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239

Query: 188 HHGPRPRA----IWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLN 232
             G R  A     W     + + +GG+        L  EV+   ++  N
Sbjct: 240 GAGGRGGAQRIPPWPLRRLSLQYLGGVSEYSNKQELEQEVIVGKMLRNN 288


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 57/216 (26%), Positives = 71/216 (32%), Gaps = 40/216 (18%)

Query: 39  GAPWRR---PCPRTCRQDPWRCHPSASVRVGDHFLPWLAGEPR---PRRPSRTFLLTALK 92
           G P RR   PCP   R+    C P   +  GD    W  G P    P  P     L A +
Sbjct: 688 GGPSRRGPLPCPLCSREGACSCLP---LERGDAVAGW-GGHPALGCPHPPEDDSSLRAER 743

Query: 93  QRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSC 152
              ++      +P AP   A P  L    GA  P    P    PP+              
Sbjct: 744 GSLAD------LPMAPPASAPPEFLDPLMGAAAPQY--PGRGPPPA-------------- 781

Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFV 212
              P   PP    PA  +           PG G    GP+P      + + F   G    
Sbjct: 782 ---PPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPG 838

Query: 213 RQAALALGLEVVFTALMPLNLFPGDPGSIRPGPEPG 248
             AA   G+        P    P DPG+ RP P+PG
Sbjct: 839 GGAAEEEGVP---RPRAPPE--PPDPGAPRPPPDPG 869


>gi|8924248 SRY-box 18 [Homo sapiens]
          Length = 384

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 73/291 (25%), Positives = 101/291 (34%), Gaps = 38/291 (13%)

Query: 10  PGASSTCAWGLGSCAG---RGLGVRTASVRTVGAPWRRPCPRTC---RQDPWRCHPSASV 63
           P A   CAW  G  A    RGL    A++    AP   P P+       +P R   S + 
Sbjct: 14  PPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGLSPAG 73

Query: 64  RVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGA 123
           R G+      A E R RRP   F++ A  +R     +   +  A     L  +LG  W  
Sbjct: 74  R-GER---QAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNA----VLSKMLGKAWKE 125

Query: 124 CRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVG-- 181
              A   P +     LR             +  R  P  +++P    +         G  
Sbjct: 126 LNAAEKRPFVEEAERLR------------VQHLRDHPNYKYRPRRKKQARKARRLEPGLL 173

Query: 182 -PGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLN-LFPGDPG 239
            PGL      P P    + SA AF  +  L     A   GL +      PL+ L PG+  
Sbjct: 174 LPGLAPPQPPPEPFPAASGSARAFRELPPL----GAEFDGLGLPTPERSPLDGLEPGEAA 229

Query: 240 SIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPA 290
              P   P   A R  +    P  E+  + G C  +   P  +A R   PA
Sbjct: 230 FFPPPAAPEDCALRPFRAPYAP-TELSRDPGGCYGA---PLAEALRTAPPA 276


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 35.8 bits (81), Expect = 0.052
 Identities = 29/83 (34%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 235 PGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAP-PAGQAGREVGPAGHD 293
           PG PG       PG   S   +G  G       E G+   S  P P G  G   GPAG D
Sbjct: 179 PGPPGPPGTSGHPGSPGSPGYQGPPG-------EPGQAGPSGPPGPPGAIGPS-GPAGKD 230

Query: 294 HRVGKPEDGKERALRAP--VRGP 314
              G+P    ER L  P  ++GP
Sbjct: 231 GESGRPGRPGERGLPGPPGIKGP 253



 Score = 28.5 bits (62), Expect = 8.3
 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 236  GDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAA------PPAGQAGREVGP 289
            G+ G   P   PG   SR   G  GP  + + ETGE  A+        P    A    GP
Sbjct: 1065 GESGPAGPAGAPGPAGSRGAPGPQGPRGD-KGETGERGAAGIKGHRGFPGNPGAPGSPGP 1123

Query: 290  AGHDHRVGKPEDGKERALRAPVRGP 314
            AG    +G P     R    P   P
Sbjct: 1124 AGQQGAIGSPGPAGPRGPVGPSGPP 1148


>gi|195947369 junction-mediating and regulatory protein [Homo
           sapiens]
          Length = 988

 Score = 35.8 bits (81), Expect = 0.052
 Identities = 41/118 (34%), Positives = 48/118 (40%), Gaps = 19/118 (16%)

Query: 11  GASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS-ASVRVGDHF 69
           GA+S  + G GS AGRG    TAS   V    R P PR  R   W    S  S R     
Sbjct: 72  GAASDGSRGPGSPAGRGRPEATASATLV----RSPGPR--RSSAWAEGGSPRSTRS---- 121

Query: 70  LPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
              L G+PR R P         + R   P+R +P+P      A     GA   A RPA
Sbjct: 122 ---LLGDPRLRSPGS----KGAESRLRSPVRAKPIPGQKTSEA-DDAAGAAAAAARPA 171


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 35.4 bits (80), Expect = 0.068
 Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 15/83 (18%)

Query: 234  FPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGRE-----VG 288
            FPG PG   P  EPG Q +    G  GP   V P           PAG+ GRE      G
Sbjct: 994  FPGLPG---PSGEPGKQGAPGASGDRGPPGPVGP------PGLTGPAGEPGREGSPGADG 1044

Query: 289  PAGHDHRVG-KPEDGKERALRAP 310
            P G D   G K + G+  A+ AP
Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAP 1067



 Score = 34.3 bits (77), Expect = 0.15
 Identities = 65/231 (28%), Positives = 75/231 (32%), Gaps = 45/231 (19%)

Query: 101  ERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQ- 159
            ER  P  P     PG  GA   +      GP    PP L G A + GR GS    P A  
Sbjct: 991  ERGFPGLPGPSGEPGKQGAPGASGDRGPPGP--VGPPGLTGPAGEPGREGS----PGADG 1044

Query: 160  PPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFE--VVGGLFVRQAAL 217
            PP R   AG      + G    PG       P P           E    G +     A 
Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1104

Query: 218  ALGLEVV-----------------------FTALMPLNLFPGDPGSIRPGPEPGCQASRV 254
            A G++                         FT L  L   PG PG   P  + G      
Sbjct: 1105 ARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL---PGPPG---PSGDQGASGPAG 1158

Query: 255  IKGGLGPFIEVEPETGECSASAAP----PAGQAGR--EVGPAGHDHRVGKP 299
              G  GP   V P +G+  A+  P    P G  GR  E GPAG     G P
Sbjct: 1159 PSGPRGPPGPVGP-SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP 1208



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 236  GDPGSIRPGPEPGCQASRVIKG--GLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHD 293
            G PG   P  EPG + S    G  G      V+ + GE  A  AP A       GPAG  
Sbjct: 1023 GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-- 1080

Query: 294  HRVGKPEDGKERALRAPVRGP 314
               GK  D  E   + P+ GP
Sbjct: 1081 -PTGKQGDRGEAGAQGPM-GP 1099


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 35.4 bits (80), Expect = 0.068
 Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 15/83 (18%)

Query: 234 FPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGRE-----VG 288
           FPG PG   P  EPG Q +    G  GP   V P           PAG+ GRE      G
Sbjct: 925 FPGLPG---PSGEPGKQGAPGASGDRGPPGPVGP------PGLTGPAGEPGREGSPGADG 975

Query: 289 PAGHDHRVG-KPEDGKERALRAP 310
           P G D   G K + G+  A+ AP
Sbjct: 976 PPGRDGAAGVKGDRGETGAVGAP 998



 Score = 34.3 bits (77), Expect = 0.15
 Identities = 65/231 (28%), Positives = 75/231 (32%), Gaps = 45/231 (19%)

Query: 101  ERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQ- 159
            ER  P  P     PG  GA   +      GP    PP L G A + GR GS    P A  
Sbjct: 922  ERGFPGLPGPSGEPGKQGAPGASGDRGPPGP--VGPPGLTGPAGEPGREGS----PGADG 975

Query: 160  PPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFE--VVGGLFVRQAAL 217
            PP R   AG      + G    PG       P P           E    G +     A 
Sbjct: 976  PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1035

Query: 218  ALGLEVV-----------------------FTALMPLNLFPGDPGSIRPGPEPGCQASRV 254
            A G++                         FT L  L   PG PG   P  + G      
Sbjct: 1036 ARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL---PGPPG---PSGDQGASGPAG 1089

Query: 255  IKGGLGPFIEVEPETGECSASAAP----PAGQAGR--EVGPAGHDHRVGKP 299
              G  GP   V P +G+  A+  P    P G  GR  E GPAG     G P
Sbjct: 1090 PSGPRGPPGPVGP-SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP 1139



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 236  GDPGSIRPGPEPGCQASRVIKG--GLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHD 293
            G PG   P  EPG + S    G  G      V+ + GE  A  AP A       GPAG  
Sbjct: 954  GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-- 1011

Query: 294  HRVGKPEDGKERALRAPVRGP 314
               GK  D  E   + P+ GP
Sbjct: 1012 -PTGKQGDRGEAGAQGPM-GP 1030


>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
           sapiens]
          Length = 304

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 54/185 (29%), Positives = 63/185 (34%), Gaps = 26/185 (14%)

Query: 10  PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67
           PGA+   A G G   G G        R    G+  R    R C   P  C  S+      
Sbjct: 84  PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139

Query: 68  HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
           H  P L G     R S   L+          +  RP PA PA L +     AG  A R  
Sbjct: 140 HRWPQLRGREAEPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190

Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187
              P LC+     G+A  G R    TR     PP    P   S    +GG  V    G R
Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239

Query: 188 HHGPR 192
             G R
Sbjct: 240 GAGGR 244


>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
           sapiens]
          Length = 304

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 54/185 (29%), Positives = 63/185 (34%), Gaps = 26/185 (14%)

Query: 10  PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67
           PGA+   A G G   G G        R    G+  R    R C   P  C  S+      
Sbjct: 84  PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139

Query: 68  HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
           H  P L G     R S   L+          +  RP PA PA L +     AG  A R  
Sbjct: 140 HRWPQLRGREAEPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190

Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187
              P LC+     G+A  G R    TR     PP    P   S    +GG  V    G R
Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239

Query: 188 HHGPR 192
             G R
Sbjct: 240 GAGGR 244


>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
          Length = 1526

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 37/126 (29%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 3    SQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPSAS 62
            S   RT P  S T + G          V +  +R   AP R P P + +  P    P+  
Sbjct: 1038 SSSPRTSPCQSPTISEG---------PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATP 1088

Query: 63   VRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWG 122
            +   D   P     P P RP       A  QR   P   R  P+  A LA PG   AG+ 
Sbjct: 1089 LPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPP-SGRSQPSPQAGLAGPG--PAGYS 1145

Query: 123  ACRPAL 128
              RP +
Sbjct: 1146 TARPTI 1151


>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 99  LRERPVPAAPAC-LALPGLLGAG----WGACRPALYGPSLCAPPSLRGSAEDGGRSGSC- 152
           LR  P P  P   L   G    G     GA  P   GPSL  P + R S     R  SC 
Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180

Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPR 194
              P A+P    +  G + Q + G W   PG       P PR
Sbjct: 181 PHAPLARPSAVAEGPGLA-QASGGSWRRCPGASSAGPPPWPR 221


>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 99  LRERPVPAAPAC-LALPGLLGAG----WGACRPALYGPSLCAPPSLRGSAEDGGRSGSC- 152
           LR  P P  P   L   G    G     GA  P   GPSL  P + R S     R  SC 
Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180

Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPR 194
              P A+P    +  G + Q + G W   PG       P PR
Sbjct: 181 PHAPLARPSAVAEGPGLA-QASGGSWRRCPGASSAGPPPWPR 221


>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
          Length = 430

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 58/213 (27%), Positives = 72/213 (33%), Gaps = 47/213 (22%)

Query: 133 LCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGP-GLGERHHGP 191
           L A  +LR      G  G   R PR  P     PA     +  GG   G  GL     GP
Sbjct: 14  LLAGLALRELEPGCGSPGRGRRGPRPGPGDEAAPALGRRGKGSGGPEAGADGLSRGERGP 73

Query: 192 RPRAIWTASASAFEVV-----------GGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
           R  A+   SA                 GG   R + ++LG +             G P S
Sbjct: 74  RRAAVPELSAQPAGSPRASLAGSDGGGGGGSARSSGISLGYDQRH----------GSPRS 123

Query: 241 IRPGPEPG-----------CQASRVIKGGLGPFIEVEPETGECSASAAPP--AGQA---- 283
            R  P PG             +S   +G  G + +  P  G C A A  P  AG A    
Sbjct: 124 GRSDPRPGPGPPSVGSARSSVSSLGSRGSAGAYADFLPP-GACPAPARSPEPAGPAPFPL 182

Query: 284 -------GREVGPAGHDHRVGKPEDGKERALRA 309
                  GRE GP+  + R+       ERAL A
Sbjct: 183 PALPLPPGREGGPSAAERRLEALTRELERALEA 215


>gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 213

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 25/142 (17%)

Query: 42  WRRPCPRTCRQDPWRCHPSASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRE 101
           +R P   TC   PW   P  S++V D   PWL    +PR   R      L+ + S  +  
Sbjct: 65  FRPPQLLTCLGGPWCLCPLCSLQVED---PWLFSLLQPRDQLR------LENQESCCVCG 115

Query: 102 RPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPP 161
           R   +AP  +A      A  G C   L   +  +PP  R +A +GG +      P AQ P
Sbjct: 116 REDNSAPDTVA------ATSGVC-GELRDSAKRSPP--RAAAGEGGWARP-PPTPGAQGP 165

Query: 162 LR------WQPAGSSEQEAQGG 177
            +      W+P G  +  A+GG
Sbjct: 166 AKPPRFPAWRPGGRGDPNAEGG 187


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 70/236 (29%), Positives = 81/236 (34%), Gaps = 37/236 (15%)

Query: 66   GDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEP-LRERPVPAAPACLALPGLLGAGWGAC 124
            G   LP   G P P        L  L  +  +P LR  P PA P     PGL+G      
Sbjct: 1192 GPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGP-----PGLMGP----- 1241

Query: 125  RPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQG--GWSVGP 182
             P   G +    P L G   D G+ G         P    +P    E  A G  G    P
Sbjct: 1242 -PGFKGKT--GHPGLPGPKGDCGKPGP--------PGSTGRPGAEGEPGAMGPQGRPGPP 1290

Query: 183  GLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGSIR 242
            G    H GP P        +    VG    R A    GL     A +P    PG PG   
Sbjct: 1291 G----HVGP-PGPPGQPGPAGISAVGLKGDRGATGERGL-----AGLPGQ--PGPPGHPG 1338

Query: 243  PGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK 298
            P  EPG   +   +G  G      P   +    AA   GQAG E G AG     GK
Sbjct: 1339 PPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAG-EKGRAGMPGGPGK 1393



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 11/74 (14%)

Query: 235 PGDPGSIRPGP--EPGCQASRVIKGGLGPFIEVEPETGECSASAAP-------PAGQAGR 285
           PG PG    GP  EPG      I+G  GP     P TGE  A  +P       P G  G 
Sbjct: 782 PGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGP-TGEKGAQGSPGVKGATGPVGPPGA 840

Query: 286 EV-GPAGHDHRVGK 298
            V GP G D + G+
Sbjct: 841 SVSGPPGRDGQQGQ 854



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 235  PGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDH 294
            PG PG+  P   PG +  R   G  G   E  P   E       PAG  G E GP G+  
Sbjct: 1089 PGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRG-ERGPQGNSG 1147

Query: 295  RVG 297
              G
Sbjct: 1148 EKG 1150



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 235 PGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGR--EVGPAGH 292
           PGDPG+      PG      ++G  GP  E       C +        AGR  + GP G 
Sbjct: 690 PGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGE 749

Query: 293 DHRVGKPEDGKERALRAP-VRGP 314
               G    GK      P V+GP
Sbjct: 750 QGPEGVGRPGKPGQPGLPGVQGP 772



 Score = 29.3 bits (64), Expect = 4.9
 Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 14/70 (20%)

Query: 235  PGDPGSI-RPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHD 293
            PG PG +  PGP PG QA +  +G  GP             S  PP G  G + GPAG D
Sbjct: 1167 PGFPGKVGSPGP-PGPQAEKGSEGIRGP--------SGLPGSPGPP-GPPGIQ-GPAGLD 1215

Query: 294  HRVGKPEDGK 303
               GK  DGK
Sbjct: 1216 GLDGK--DGK 1223


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 56/213 (26%), Positives = 73/213 (34%), Gaps = 14/213 (6%)

Query: 101  ERPVPAAPACLALPGLLGAGWGACRPALYGP-SLCAPPSLRGSAEDGGRSGSCTRLPRAQ 159
            ER +P     +  PG LG    A  P   GP      P + G+  + GR G+        
Sbjct: 881  ERGLPGVAGAVGEPGPLGI---AGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGN---DG 934

Query: 160  PPLR-WQPAGSSEQEAQGGWS-VGPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAAL 217
            PP R  QP    E+   G    VG       HGP   A    +       G +    A  
Sbjct: 935  PPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVG 994

Query: 218  ALGLEVVFTALMPLNLFPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAA 277
              G     +    +    G+PG   P   PG +    ++G  G       +    S   A
Sbjct: 995  PRGP----SGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPA 1050

Query: 278  PPAGQAGREVGPAGHDHRVGKPEDGKERALRAP 310
             P G AG   GPAG D R G P       +R P
Sbjct: 1051 GPRGPAGPS-GPAGKDGRTGHPGTVGPAGIRGP 1082



 Score = 32.0 bits (71), Expect = 0.75
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 231 LNLFPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPA 290
           + L PG  G + P   PG   +   +G  GP  E         A A  PAG  G+    A
Sbjct: 86  VGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGK----A 141

Query: 291 GHDHRVGKPEDGKERALRAP 310
           G D   GKP    ER +  P
Sbjct: 142 GEDGHPGKPGRPGERGVVGP 161


>gi|226823326 methenyltetrahydrofolate synthetase domain containing
           isoform 5 [Homo sapiens]
          Length = 363

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 245 PEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK-PEDGK 303
           PEPGCQ +  +  G  P     PET    A+   P G    E  P   D  VG  P D +
Sbjct: 243 PEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPG----EGAPLAADVYVGNLPGDAR 298

Query: 304 ----ERALR----APVRGPWLRP 318
               +RALR     P+R  W  P
Sbjct: 299 VSDLKRALRELGSVPLRLTWQGP 321


>gi|226823324 methenyltetrahydrofolate synthetase domain containing
           isoform 4 [Homo sapiens]
          Length = 382

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%)

Query: 245 PEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK-PEDGK 303
           PEPGCQ +  +  G  P     PET    A+   P G    E  P   D  VG  P D +
Sbjct: 262 PEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPG----EGAPLAADVYVGNLPGDAR 317

Query: 304 ----ERALR----APVRGPWLRP 318
               +RALR     P+R  W  P
Sbjct: 318 VSDLKRALRELGSVPLRLTWQGP 340


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,060,374
Number of Sequences: 37866
Number of extensions: 1066026
Number of successful extensions: 4670
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 218
Number of HSP's that attempted gapping in prelim test: 4391
Number of HSP's gapped (non-prelim): 548
length of query: 319
length of database: 18,247,518
effective HSP length: 102
effective length of query: 217
effective length of database: 14,385,186
effective search space: 3121585362
effective search space used: 3121585362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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