BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo sapiens] (319 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo ... 677 0.0 gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo ... 677 0.0 gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo ... 593 e-170 gi|21359951 RNA binding motif protein 42 [Homo sapiens] 44 2e-04 gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.003 gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.014 gi|27886539 nuclear factor of activated T-cells, cytoplasmic, ca... 37 0.023 gi|27886541 nuclear factor of activated T-cells, cytoplasmic, ca... 37 0.023 gi|209862843 nuclear factor of activated T-cells, cytoplasmic, c... 37 0.023 gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens] 37 0.023 gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens] 37 0.023 gi|118402590 myosin XV [Homo sapiens] 37 0.030 gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 37 0.030 gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 36 0.040 gi|8924248 SRY-box 18 [Homo sapiens] 36 0.040 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 36 0.052 gi|195947369 junction-mediating and regulatory protein [Homo sap... 36 0.052 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 35 0.068 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 35 0.068 gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 35 0.088 gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 35 0.088 gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 35 0.088 gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 35 0.12 gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 35 0.12 gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 35 0.12 gi|239754965 PREDICTED: hypothetical protein [Homo sapiens] 34 0.15 gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 34 0.15 gi|48762934 alpha 2 type I collagen [Homo sapiens] 34 0.20 gi|226823326 methenyltetrahydrofolate synthetase domain containi... 33 0.26 gi|226823324 methenyltetrahydrofolate synthetase domain containi... 33 0.26 >gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo sapiens] Length = 319 Score = 677 bits (1747), Expect = 0.0 Identities = 319/319 (100%), Positives = 319/319 (100%) Query: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS Sbjct: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60 Query: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG Sbjct: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120 Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180 Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240 Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300 Query: 301 DGKERALRAPVRGPWLRPF 319 DGKERALRAPVRGPWLRPF Sbjct: 301 DGKERALRAPVRGPWLRPF 319 >gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo sapiens] Length = 319 Score = 677 bits (1747), Expect = 0.0 Identities = 319/319 (100%), Positives = 319/319 (100%) Query: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS Sbjct: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60 Query: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG Sbjct: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120 Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180 Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240 Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300 Query: 301 DGKERALRAPVRGPWLRPF 319 DGKERALRAPVRGPWLRPF Sbjct: 301 DGKERALRAPVRGPWLRPF 319 >gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo sapiens] Length = 287 Score = 593 bits (1529), Expect = e-170 Identities = 287/319 (89%), Positives = 287/319 (89%), Gaps = 32/319 (10%) Query: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS Sbjct: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60 Query: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG Sbjct: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120 Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180 Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240 Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300 IRPGPEPGCQASRVIKGGLGPFIEVEP E Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEP--------------------------------E 268 Query: 301 DGKERALRAPVRGPWLRPF 319 DGKERALRAPVRGPWLRPF Sbjct: 269 DGKERALRAPVRGPWLRPF 287 >gi|21359951 RNA binding motif protein 42 [Homo sapiens] Length = 480 Score = 43.5 bits (101), Expect = 2e-04 Identities = 63/219 (28%), Positives = 77/219 (35%), Gaps = 31/219 (14%) Query: 106 AAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQ 165 A P +AL A G P GP + PP R G GS L +PPL + Sbjct: 178 AGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAP---GPPLGSMAAL---RPPLE-E 230 Query: 166 PAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVF 225 PA E G +G GL E+ A ASA VG +G + Sbjct: 231 PAAPREL----GLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPL 286 Query: 226 TALMPLNLFPGDPGSIRPGPEPGCQASRVIKGGLGPF-----IEVEPETGECSASAAPPA 280 MPL P PEP V++G L P + + P PP Sbjct: 287 ALAMPL-----------PEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRP--PRPEPPP 333 Query: 281 GQAGREVG-PAGHDHRVGKPEDGKERALRAPVRGPWLRP 318 G EV P G D + GKPE K R +R W P Sbjct: 334 GLMALEVPEPLGEDKKKGKPEKLK-RCIRTAAGSSWEDP 371 >gi|110832843 TBP-associated factor 4 [Homo sapiens] Length = 1085 Score = 40.0 bits (92), Expect = 0.003 Identities = 57/211 (27%), Positives = 73/211 (34%), Gaps = 33/211 (15%) Query: 108 PACLALPGLLGAGWGACRPALYGPSLC------APPSLRGSAEDGGRSGSCTRLPRA--- 158 PA A PG G G RP P APP+ + G +GSC +P A Sbjct: 91 PAGRARPG----GGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAV 146 Query: 159 ------QPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFV 212 P +PAG + A+ G GPG G GP P A A + + G Sbjct: 147 AAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP---GPGPGPGKPAGPGAAQTLNG--- 200 Query: 213 RQAALALGLEVVFTALMPLNLFPGDPGSIRPGPEPGCQASRV----IKGGLGPFIEVEPE 268 AAL L A ++L P ++ P P+P + + G P P Sbjct: 201 -SAAL---LNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPS 256 Query: 269 TGECSASAAPPAGQAGREVGPAGHDHRVGKP 299 A AAP A PA G P Sbjct: 257 PPAAPAPAAPAAAPPPPPPAPATLARPPGHP 287 Score = 37.0 bits (84), Expect = 0.023 Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 17/167 (10%) Query: 74 AGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSL 133 A P P PS + P P P APA LA P AG PA+ P+ Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAAAPP----PPPPAPATLARPPGHPAGPPTAAPAVPPPA- 301 Query: 134 CAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRP 193 +A++GG +G+ A P PAG S Q G + P G + P+ Sbjct: 302 --------AAQNGGSAGAAP----APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKR 349 Query: 194 RAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240 A+ G A++ +G + P + P PG+ Sbjct: 350 VVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGT 396 >gi|158854042 hypothetical protein LOC222183 [Homo sapiens] Length = 653 Score = 37.7 bits (86), Expect = 0.014 Identities = 53/189 (28%), Positives = 70/189 (37%), Gaps = 23/189 (12%) Query: 118 GAGWGAC--------RPALYGP---SLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQ- 165 G+GWG+ R +G S +PP S R + P PP R + Sbjct: 305 GSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPT--PPARGKE 362 Query: 166 ---PAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLE 222 P + + +GG + G G G R R R +SASA G R A Sbjct: 363 SPSPRSAPSSQGRGGRAAG-GAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSR 421 Query: 223 VVFTALMPLNLFPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQ 282 + A + G G+ PGPEPG + GG G + P AS +P G Sbjct: 422 SLSRARSSSDSGSGR-GAPGPGPEPGSERGH---GGHGKRAKERPPRAR-PASTSPSPGA 476 Query: 283 AGREVGPAG 291 GR GP G Sbjct: 477 HGRRGGPEG 485 >gi|27886539 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 isoform B [Homo sapiens] Length = 921 Score = 37.0 bits (84), Expect = 0.023 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 238 PGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAG 291 PG+ RPGP P Q R+ G I+ + T + +A PP +EV PAG Sbjct: 839 PGTTRPGPPPVSQGQRLSPGSYPTVIQQQNATSQRAAKNGPPVSDQ-KEVLPAG 891 >gi|27886541 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 isoform C [Homo sapiens] Length = 925 Score = 37.0 bits (84), Expect = 0.023 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 238 PGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAG 291 PG+ RPGP P Q R+ G I+ + T + +A PP +EV PAG Sbjct: 839 PGTTRPGPPPVSQGQRLSPGSYPTVIQQQNATSQRAAKNGPPVSDQ-KEVLPAG 891 >gi|209862843 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 isoform D [Homo sapiens] Length = 901 Score = 37.0 bits (84), Expect = 0.023 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 238 PGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAG 291 PG+ RPGP P Q R+ G I+ + T + +A PP +EV PAG Sbjct: 819 PGTTRPGPPPVSQGQRLSPGSYPTVIQQQNATSQRAAKNGPPVSDQ-KEVLPAG 871 >gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens] Length = 748 Score = 37.0 bits (84), Expect = 0.023 Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 12/116 (10%) Query: 80 RRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSL 139 RR S +L A++Q ++PLR + A A L A A GP L L Sbjct: 635 RRDSGVYLCAAVEQGFTQPLRRLSLHVLSATQA--ERLARAEEAAPAAPPGPKLWYRDFL 692 Query: 140 RGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRA 195 + GG S + R+ R QP L+ P S + G R H P PRA Sbjct: 693 QLVEPGGGGSANSLRMCRPQPALQSLPLESRRK----------GRNRRTHAPEPRA 738 >gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens] Length = 749 Score = 37.0 bits (84), Expect = 0.023 Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 12/116 (10%) Query: 80 RRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSL 139 RR S +L A++Q ++PLR + A A L A A GP L L Sbjct: 636 RRDSGVYLCAAVEQGFTQPLRRLSLHVLSATQA--ERLARAEEAAPAAPPGPKLWYRDFL 693 Query: 140 RGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRA 195 + GG S + R+ R QP L+ P S + G R H P PRA Sbjct: 694 QLVEPGGGGSANSLRMCRPQPALQSLPLESRRK----------GRNRRTHAPEPRA 739 >gi|118402590 myosin XV [Homo sapiens] Length = 3530 Score = 36.6 bits (83), Expect = 0.030 Identities = 37/135 (27%), Positives = 43/135 (31%), Gaps = 25/135 (18%) Query: 59 PSASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLG 118 PS+ P L+G PRP P + LR P P A P Sbjct: 670 PSSGPPPAPPLSPALSGLPRPASPYGS-------------LRRHPPPWAAPAHVPPAPQA 716 Query: 119 AGWGACRPALYGPS-----LCAP---PSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSS 170 + W P P L P PS RGS G G PRA W P S Sbjct: 717 SWWAFVEPPAVSPEVPPDLLAFPGPRPSFRGSRRRGAAFGFPGASPRASRRRAWSPLASP 776 Query: 171 EQEAQGGWSVGPGLG 185 + + PGLG Sbjct: 777 QPSLRS----SPGLG 787 >gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] Length = 316 Score = 36.6 bits (83), Expect = 0.030 Identities = 62/229 (27%), Positives = 78/229 (34%), Gaps = 30/229 (13%) Query: 10 PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67 PGA+ A G G G G R G+ R R C P C S+ Sbjct: 84 PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139 Query: 68 HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127 H P L G R S L+ + RP PA PA L + AG A R Sbjct: 140 HRWPQLRGREADPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190 Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187 P LC+ G+A G R TR PP P S +GG V G R Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239 Query: 188 HHGPRPRA----IWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLN 232 G R A W + + +GG+ L EV+ ++ N Sbjct: 240 GAGGRGGAQRIPPWPLRRLSLQYLGGVSEYSNKQELEQEVIVGKMLRNN 288 >gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] Length = 1489 Score = 36.2 bits (82), Expect = 0.040 Identities = 57/216 (26%), Positives = 71/216 (32%), Gaps = 40/216 (18%) Query: 39 GAPWRR---PCPRTCRQDPWRCHPSASVRVGDHFLPWLAGEPR---PRRPSRTFLLTALK 92 G P RR PCP R+ C P + GD W G P P P L A + Sbjct: 688 GGPSRRGPLPCPLCSREGACSCLP---LERGDAVAGW-GGHPALGCPHPPEDDSSLRAER 743 Query: 93 QRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSC 152 ++ +P AP A P L GA P P PP+ Sbjct: 744 GSLAD------LPMAPPASAPPEFLDPLMGAAAPQY--PGRGPPPA-------------- 781 Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFV 212 P PP PA + PG G GP+P + + F G Sbjct: 782 ---PPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPG 838 Query: 213 RQAALALGLEVVFTALMPLNLFPGDPGSIRPGPEPG 248 AA G+ P P DPG+ RP P+PG Sbjct: 839 GGAAEEEGVP---RPRAPPE--PPDPGAPRPPPDPG 869 >gi|8924248 SRY-box 18 [Homo sapiens] Length = 384 Score = 36.2 bits (82), Expect = 0.040 Identities = 73/291 (25%), Positives = 101/291 (34%), Gaps = 38/291 (13%) Query: 10 PGASSTCAWGLGSCAG---RGLGVRTASVRTVGAPWRRPCPRTC---RQDPWRCHPSASV 63 P A CAW G A RGL A++ AP P P+ +P R S + Sbjct: 14 PPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGLSPAG 73 Query: 64 RVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGA 123 R G+ A E R RRP F++ A +R + + A L +LG W Sbjct: 74 R-GER---QAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNA----VLSKMLGKAWKE 125 Query: 124 CRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVG-- 181 A P + LR + R P +++P + G Sbjct: 126 LNAAEKRPFVEEAERLR------------VQHLRDHPNYKYRPRRKKQARKARRLEPGLL 173 Query: 182 -PGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLN-LFPGDPG 239 PGL P P + SA AF + L A GL + PL+ L PG+ Sbjct: 174 LPGLAPPQPPPEPFPAASGSARAFRELPPL----GAEFDGLGLPTPERSPLDGLEPGEAA 229 Query: 240 SIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPA 290 P P A R + P E+ + G C + P +A R PA Sbjct: 230 FFPPPAAPEDCALRPFRAPYAP-TELSRDPGGCYGA---PLAEALRTAPPA 276 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 35.8 bits (81), Expect = 0.052 Identities = 29/83 (34%), Positives = 34/83 (40%), Gaps = 11/83 (13%) Query: 235 PGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAP-PAGQAGREVGPAGHD 293 PG PG PG S +G G E G+ S P P G G GPAG D Sbjct: 179 PGPPGPPGTSGHPGSPGSPGYQGPPG-------EPGQAGPSGPPGPPGAIGPS-GPAGKD 230 Query: 294 HRVGKPEDGKERALRAP--VRGP 314 G+P ER L P ++GP Sbjct: 231 GESGRPGRPGERGLPGPPGIKGP 253 Score = 28.5 bits (62), Expect = 8.3 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 7/85 (8%) Query: 236 GDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAA------PPAGQAGREVGP 289 G+ G P PG SR G GP + + ETGE A+ P A GP Sbjct: 1065 GESGPAGPAGAPGPAGSRGAPGPQGPRGD-KGETGERGAAGIKGHRGFPGNPGAPGSPGP 1123 Query: 290 AGHDHRVGKPEDGKERALRAPVRGP 314 AG +G P R P P Sbjct: 1124 AGQQGAIGSPGPAGPRGPVGPSGPP 1148 >gi|195947369 junction-mediating and regulatory protein [Homo sapiens] Length = 988 Score = 35.8 bits (81), Expect = 0.052 Identities = 41/118 (34%), Positives = 48/118 (40%), Gaps = 19/118 (16%) Query: 11 GASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS-ASVRVGDHF 69 GA+S + G GS AGRG TAS V R P PR R W S S R Sbjct: 72 GAASDGSRGPGSPAGRGRPEATASATLV----RSPGPR--RSSAWAEGGSPRSTRS---- 121 Query: 70 LPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127 L G+PR R P + R P+R +P+P A GA A RPA Sbjct: 122 ---LLGDPRLRSPGS----KGAESRLRSPVRAKPIPGQKTSEA-DDAAGAAAAAARPA 171 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 35.4 bits (80), Expect = 0.068 Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 15/83 (18%) Query: 234 FPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGRE-----VG 288 FPG PG P EPG Q + G GP V P PAG+ GRE G Sbjct: 994 FPGLPG---PSGEPGKQGAPGASGDRGPPGPVGP------PGLTGPAGEPGREGSPGADG 1044 Query: 289 PAGHDHRVG-KPEDGKERALRAP 310 P G D G K + G+ A+ AP Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAP 1067 Score = 34.3 bits (77), Expect = 0.15 Identities = 65/231 (28%), Positives = 75/231 (32%), Gaps = 45/231 (19%) Query: 101 ERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQ- 159 ER P P PG GA + GP PP L G A + GR GS P A Sbjct: 991 ERGFPGLPGPSGEPGKQGAPGASGDRGPPGP--VGPPGLTGPAGEPGREGS----PGADG 1044 Query: 160 PPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFE--VVGGLFVRQAAL 217 PP R AG + G PG P P E G + A Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1104 Query: 218 ALGLEVV-----------------------FTALMPLNLFPGDPGSIRPGPEPGCQASRV 254 A G++ FT L L PG PG P + G Sbjct: 1105 ARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL---PGPPG---PSGDQGASGPAG 1158 Query: 255 IKGGLGPFIEVEPETGECSASAAP----PAGQAGR--EVGPAGHDHRVGKP 299 G GP V P +G+ A+ P P G GR E GPAG G P Sbjct: 1159 PSGPRGPPGPVGP-SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP 1208 Score = 31.2 bits (69), Expect = 1.3 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 6/81 (7%) Query: 236 GDPGSIRPGPEPGCQASRVIKG--GLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHD 293 G PG P EPG + S G G V+ + GE A AP A GPAG Sbjct: 1023 GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-- 1080 Query: 294 HRVGKPEDGKERALRAPVRGP 314 GK D E + P+ GP Sbjct: 1081 -PTGKQGDRGEAGAQGPM-GP 1099 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 35.4 bits (80), Expect = 0.068 Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 15/83 (18%) Query: 234 FPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGRE-----VG 288 FPG PG P EPG Q + G GP V P PAG+ GRE G Sbjct: 925 FPGLPG---PSGEPGKQGAPGASGDRGPPGPVGP------PGLTGPAGEPGREGSPGADG 975 Query: 289 PAGHDHRVG-KPEDGKERALRAP 310 P G D G K + G+ A+ AP Sbjct: 976 PPGRDGAAGVKGDRGETGAVGAP 998 Score = 34.3 bits (77), Expect = 0.15 Identities = 65/231 (28%), Positives = 75/231 (32%), Gaps = 45/231 (19%) Query: 101 ERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQ- 159 ER P P PG GA + GP PP L G A + GR GS P A Sbjct: 922 ERGFPGLPGPSGEPGKQGAPGASGDRGPPGP--VGPPGLTGPAGEPGREGS----PGADG 975 Query: 160 PPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFE--VVGGLFVRQAAL 217 PP R AG + G PG P P E G + A Sbjct: 976 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1035 Query: 218 ALGLEVV-----------------------FTALMPLNLFPGDPGSIRPGPEPGCQASRV 254 A G++ FT L L PG PG P + G Sbjct: 1036 ARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL---PGPPG---PSGDQGASGPAG 1089 Query: 255 IKGGLGPFIEVEPETGECSASAAP----PAGQAGR--EVGPAGHDHRVGKP 299 G GP V P +G+ A+ P P G GR E GPAG G P Sbjct: 1090 PSGPRGPPGPVGP-SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP 1139 Score = 31.2 bits (69), Expect = 1.3 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 6/81 (7%) Query: 236 GDPGSIRPGPEPGCQASRVIKG--GLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHD 293 G PG P EPG + S G G V+ + GE A AP A GPAG Sbjct: 954 GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-- 1011 Query: 294 HRVGKPEDGKERALRAPVRGP 314 GK D E + P+ GP Sbjct: 1012 -PTGKQGDRGEAGAQGPM-GP 1030 >gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo sapiens] Length = 304 Score = 35.0 bits (79), Expect = 0.088 Identities = 54/185 (29%), Positives = 63/185 (34%), Gaps = 26/185 (14%) Query: 10 PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67 PGA+ A G G G G R G+ R R C P C S+ Sbjct: 84 PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139 Query: 68 HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127 H P L G R S L+ + RP PA PA L + AG A R Sbjct: 140 HRWPQLRGREAEPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190 Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187 P LC+ G+A G R TR PP P S +GG V G R Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239 Query: 188 HHGPR 192 G R Sbjct: 240 GAGGR 244 >gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo sapiens] Length = 304 Score = 35.0 bits (79), Expect = 0.088 Identities = 54/185 (29%), Positives = 63/185 (34%), Gaps = 26/185 (14%) Query: 10 PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67 PGA+ A G G G G R G+ R R C P C S+ Sbjct: 84 PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139 Query: 68 HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127 H P L G R S L+ + RP PA PA L + AG A R Sbjct: 140 HRWPQLRGREAEPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190 Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187 P LC+ G+A G R TR PP P S +GG V G R Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239 Query: 188 HHGPR 192 G R Sbjct: 240 GAGGR 244 >gi|237757326 synaptojanin 1 isoform d [Homo sapiens] Length = 1526 Score = 35.0 bits (79), Expect = 0.088 Identities = 37/126 (29%), Positives = 47/126 (37%), Gaps = 12/126 (9%) Query: 3 SQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPSAS 62 S RT P S T + G V + +R AP R P P + + P P+ Sbjct: 1038 SSSPRTSPCQSPTISEG---------PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATP 1088 Query: 63 VRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWG 122 + D P P P RP A QR P R P+ A LA PG AG+ Sbjct: 1089 LPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPP-SGRSQPSPQAGLAGPG--PAGYS 1145 Query: 123 ACRPAL 128 RP + Sbjct: 1146 TARPTI 1151 >gi|239751178 PREDICTED: basic helix-loop-helix family, member a9 [Homo sapiens] Length = 235 Score = 34.7 bits (78), Expect = 0.12 Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 7/102 (6%) Query: 99 LRERPVPAAPAC-LALPGLLGAG----WGACRPALYGPSLCAPPSLRGSAEDGGRSGSC- 152 LR P P P L G G GA P GPSL P + R S R SC Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180 Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPR 194 P A+P + G + Q + G W PG P PR Sbjct: 181 PHAPLARPSAVAEGPGLA-QASGGSWRRCPGASSAGPPPWPR 221 >gi|239745666 PREDICTED: basic helix-loop-helix family, member a9 [Homo sapiens] Length = 235 Score = 34.7 bits (78), Expect = 0.12 Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 7/102 (6%) Query: 99 LRERPVPAAPAC-LALPGLLGAG----WGACRPALYGPSLCAPPSLRGSAEDGGRSGSC- 152 LR P P P L G G GA P GPSL P + R S R SC Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180 Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPR 194 P A+P + G + Q + G W PG P PR Sbjct: 181 PHAPLARPSAVAEGPGLA-QASGGSWRRCPGASSAGPPPWPR 221 >gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] Length = 430 Score = 34.7 bits (78), Expect = 0.12 Identities = 58/213 (27%), Positives = 72/213 (33%), Gaps = 47/213 (22%) Query: 133 LCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGP-GLGERHHGP 191 L A +LR G G R PR P PA + GG G GL GP Sbjct: 14 LLAGLALRELEPGCGSPGRGRRGPRPGPGDEAAPALGRRGKGSGGPEAGADGLSRGERGP 73 Query: 192 RPRAIWTASASAFEVV-----------GGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240 R A+ SA GG R + ++LG + G P S Sbjct: 74 RRAAVPELSAQPAGSPRASLAGSDGGGGGGSARSSGISLGYDQRH----------GSPRS 123 Query: 241 IRPGPEPG-----------CQASRVIKGGLGPFIEVEPETGECSASAAPP--AGQA---- 283 R P PG +S +G G + + P G C A A P AG A Sbjct: 124 GRSDPRPGPGPPSVGSARSSVSSLGSRGSAGAYADFLPP-GACPAPARSPEPAGPAPFPL 182 Query: 284 -------GREVGPAGHDHRVGKPEDGKERALRA 309 GRE GP+ + R+ ERAL A Sbjct: 183 PALPLPPGREGGPSAAERRLEALTRELERALEA 215 >gi|239754965 PREDICTED: hypothetical protein [Homo sapiens] Length = 213 Score = 34.3 bits (77), Expect = 0.15 Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 25/142 (17%) Query: 42 WRRPCPRTCRQDPWRCHPSASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRE 101 +R P TC PW P S++V D PWL +PR R L+ + S + Sbjct: 65 FRPPQLLTCLGGPWCLCPLCSLQVED---PWLFSLLQPRDQLR------LENQESCCVCG 115 Query: 102 RPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPP 161 R +AP +A A G C L + +PP R +A +GG + P AQ P Sbjct: 116 REDNSAPDTVA------ATSGVC-GELRDSAKRSPP--RAAAGEGGWARP-PPTPGAQGP 165 Query: 162 LR------WQPAGSSEQEAQGG 177 + W+P G + A+GG Sbjct: 166 AKPPRFPAWRPGGRGDPNAEGG 187 >gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] Length = 1604 Score = 34.3 bits (77), Expect = 0.15 Identities = 70/236 (29%), Positives = 81/236 (34%), Gaps = 37/236 (15%) Query: 66 GDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEP-LRERPVPAAPACLALPGLLGAGWGAC 124 G LP G P P L L + +P LR P PA P PGL+G Sbjct: 1192 GPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGP-----PGLMGP----- 1241 Query: 125 RPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQG--GWSVGP 182 P G + P L G D G+ G P +P E A G G P Sbjct: 1242 -PGFKGKT--GHPGLPGPKGDCGKPGP--------PGSTGRPGAEGEPGAMGPQGRPGPP 1290 Query: 183 GLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGSIR 242 G H GP P + VG R A GL A +P PG PG Sbjct: 1291 G----HVGP-PGPPGQPGPAGISAVGLKGDRGATGERGL-----AGLPGQ--PGPPGHPG 1338 Query: 243 PGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK 298 P EPG + +G G P + AA GQAG E G AG GK Sbjct: 1339 PPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAG-EKGRAGMPGGPGK 1393 Score = 31.2 bits (69), Expect = 1.3 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 11/74 (14%) Query: 235 PGDPGSIRPGP--EPGCQASRVIKGGLGPFIEVEPETGECSASAAP-------PAGQAGR 285 PG PG GP EPG I+G GP P TGE A +P P G G Sbjct: 782 PGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGP-TGEKGAQGSPGVKGATGPVGPPGA 840 Query: 286 EV-GPAGHDHRVGK 298 V GP G D + G+ Sbjct: 841 SVSGPPGRDGQQGQ 854 Score = 31.2 bits (69), Expect = 1.3 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 235 PGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDH 294 PG PG+ P PG + R G G E P E PAG G E GP G+ Sbjct: 1089 PGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRG-ERGPQGNSG 1147 Query: 295 RVG 297 G Sbjct: 1148 EKG 1150 Score = 30.8 bits (68), Expect = 1.7 Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 3/83 (3%) Query: 235 PGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGR--EVGPAGH 292 PGDPG+ PG ++G GP E C + AGR + GP G Sbjct: 690 PGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGE 749 Query: 293 DHRVGKPEDGKERALRAP-VRGP 314 G GK P V+GP Sbjct: 750 QGPEGVGRPGKPGQPGLPGVQGP 772 Score = 29.3 bits (64), Expect = 4.9 Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 14/70 (20%) Query: 235 PGDPGSI-RPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHD 293 PG PG + PGP PG QA + +G GP S PP G G + GPAG D Sbjct: 1167 PGFPGKVGSPGP-PGPQAEKGSEGIRGP--------SGLPGSPGPP-GPPGIQ-GPAGLD 1215 Query: 294 HRVGKPEDGK 303 GK DGK Sbjct: 1216 GLDGK--DGK 1223 >gi|48762934 alpha 2 type I collagen [Homo sapiens] Length = 1366 Score = 33.9 bits (76), Expect = 0.20 Identities = 56/213 (26%), Positives = 73/213 (34%), Gaps = 14/213 (6%) Query: 101 ERPVPAAPACLALPGLLGAGWGACRPALYGP-SLCAPPSLRGSAEDGGRSGSCTRLPRAQ 159 ER +P + PG LG A P GP P + G+ + GR G+ Sbjct: 881 ERGLPGVAGAVGEPGPLGI---AGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGN---DG 934 Query: 160 PPLR-WQPAGSSEQEAQGGWS-VGPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAAL 217 PP R QP E+ G VG HGP A + G + A Sbjct: 935 PPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVG 994 Query: 218 ALGLEVVFTALMPLNLFPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAA 277 G + + G+PG P PG + ++G G + S A Sbjct: 995 PRGP----SGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPA 1050 Query: 278 PPAGQAGREVGPAGHDHRVGKPEDGKERALRAP 310 P G AG GPAG D R G P +R P Sbjct: 1051 GPRGPAGPS-GPAGKDGRTGHPGTVGPAGIRGP 1082 Score = 32.0 bits (71), Expect = 0.75 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 231 LNLFPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPA 290 + L PG G + P PG + +G GP E A A PAG G+ A Sbjct: 86 VGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGK----A 141 Query: 291 GHDHRVGKPEDGKERALRAP 310 G D GKP ER + P Sbjct: 142 GEDGHPGKPGRPGERGVVGP 161 >gi|226823326 methenyltetrahydrofolate synthetase domain containing isoform 5 [Homo sapiens] Length = 363 Score = 33.5 bits (75), Expect = 0.26 Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%) Query: 245 PEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK-PEDGK 303 PEPGCQ + + G P PET A+ P G E P D VG P D + Sbjct: 243 PEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPG----EGAPLAADVYVGNLPGDAR 298 Query: 304 ----ERALR----APVRGPWLRP 318 +RALR P+R W P Sbjct: 299 VSDLKRALRELGSVPLRLTWQGP 321 >gi|226823324 methenyltetrahydrofolate synthetase domain containing isoform 4 [Homo sapiens] Length = 382 Score = 33.5 bits (75), Expect = 0.26 Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%) Query: 245 PEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK-PEDGK 303 PEPGCQ + + G P PET A+ P G E P D VG P D + Sbjct: 262 PEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPG----EGAPLAADVYVGNLPGDAR 317 Query: 304 ----ERALR----APVRGPWLRP 318 +RALR P+R W P Sbjct: 318 VSDLKRALRELGSVPLRLTWQGP 340 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.138 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,060,374 Number of Sequences: 37866 Number of extensions: 1066026 Number of successful extensions: 4670 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 218 Number of HSP's that attempted gapping in prelim test: 4391 Number of HSP's gapped (non-prelim): 548 length of query: 319 length of database: 18,247,518 effective HSP length: 102 effective length of query: 217 effective length of database: 14,385,186 effective search space: 3121585362 effective search space used: 3121585362 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.