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Search of human proteins with 239741074
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741074 PREDICTED: hypothetical protein XP_002342082 [Homo
sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741074 PREDICTED: hypothetical protein XP_002342082 [Homo ... 269 4e-73
gi|12056465 fibrillarin [Homo sapiens] 34 0.037
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 33 0.064
gi|55956899 keratin 9 [Homo sapiens] 33 0.064
gi|4758216 dishevelled 2 [Homo sapiens] 33 0.064
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 32 0.11
gi|24430190 keratin 15 [Homo sapiens] 32 0.14
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ... 31 0.24
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ... 31 0.24
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ... 31 0.24
gi|4507161 SRY-box 11 [Homo sapiens] 31 0.32
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 31 0.32
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 31 0.32
gi|131412228 keratin 13 isoform b [Homo sapiens] 30 0.41
gi|131412225 keratin 13 isoform a [Homo sapiens] 30 0.41
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 30 0.41
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 30 0.41
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 30 0.54
gi|30061565 La ribonucleoprotein domain family member 2 isoform ... 30 0.54
gi|30061569 La ribonucleoprotein domain family member 2 isoform ... 30 0.54
gi|30061567 La ribonucleoprotein domain family member 2 isoform ... 30 0.54
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 30 0.54
gi|109255251 loricrin [Homo sapiens] 30 0.54
gi|38202255 threonyl-tRNA synthetase [Homo sapiens] 30 0.54
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 30 0.71
gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo s... 30 0.71
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 30 0.71
gi|5032007 purine-rich element binding protein A [Homo sapiens] 30 0.71
gi|239753240 PREDICTED: hypothetical protein XP_002345595 [Homo ... 30 0.71
gi|239747803 PREDICTED: hypothetical protein XP_002348320 [Homo ... 30 0.71
>gi|239741074 PREDICTED: hypothetical protein XP_002342082 [Homo
sapiens]
Length = 130
Score = 269 bits (688), Expect = 4e-73
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MENCCRCPKQKAGGKISTRTSKRWYHSQIPRRLHSTKHLRTLPLFHSVLPRGVRKNPESI 60
MENCCRCPKQKAGGKISTRTSKRWYHSQIPRRLHSTKHLRTLPLFHSVLPRGVRKNPESI
Sbjct: 1 MENCCRCPKQKAGGKISTRTSKRWYHSQIPRRLHSTKHLRTLPLFHSVLPRGVRKNPESI 60
Query: 61 VSSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRVKLLHLTLELLIPVISSMWETV 120
VSSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRVKLLHLTLELLIPVISSMWETV
Sbjct: 61 VSSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRVKLLHLTLELLIPVISSMWETV 120
Query: 121 FVLEEAALFT 130
FVLEEAALFT
Sbjct: 121 FVLEEAALFT 130
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 33.9 bits (76), Expect = 0.037
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGG-RDRGHEGG 95
G G +GG R G GGG+ RGGG R RG GG
Sbjct: 16 GGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGG 48
Score = 28.1 bits (61), Expect = 2.1
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGGRDRGHEGG 95
G +GG R G GGG GGG G GG
Sbjct: 31 GGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGG 62
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGGRDRG 91
G G +GG R G GG GGGR RG
Sbjct: 10 GGFGGRGGFGDRGGRGGRGGFGGGRGRG 37
Score = 26.2 bits (56), Expect = 7.8
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 64 GESGSQGG-EVRRLGSGGGQNRGGGRDRG----HEGGS 96
G G GG R G GGG GGG RG H GG+
Sbjct: 32 GGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGN 69
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 33.1 bits (74), Expect = 0.064
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 46 HSVLPRGVRKNPESIV---SSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGG 95
H +LP + SI+ S G +G+ GG GSGGG GGG G GG
Sbjct: 13 HFLLPNFADSHHRSILLASSGGGNGAGGGGGAGGGSGGGNGAGGGGAGGAGGG 65
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 33.1 bits (74), Expect = 0.064
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGS 96
G SGS GG G G G GG GH GGS
Sbjct: 522 GGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGS 554
Score = 30.8 bits (68), Expect = 0.32
Identities = 16/35 (45%), Positives = 16/35 (45%)
Query: 62 SSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGS 96
S G SG G G G G GGG GH GGS
Sbjct: 512 SRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGS 546
Score = 29.3 bits (64), Expect = 0.92
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGS 96
G G GG GSGGG GG RG GGS
Sbjct: 488 GSRGGSGGSYGGGGSGGGYG-GGSGSRGGSGGS 519
Score = 29.3 bits (64), Expect = 0.92
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 62 SSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGS 96
S G G+ GG G GG GG RG GGS
Sbjct: 551 SGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGS 585
Score = 28.5 bits (62), Expect = 1.6
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 51 RGVRKNPESIVSSGESGSQ--GGEVRRLGS----GGGQNRGGGRDRGHEGGS 96
RG R G SG GG R GS GGG GGG G+ GGS
Sbjct: 487 RGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGS 538
Score = 28.1 bits (61), Expect = 2.1
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 63 SGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGS 96
SG G GG G GGG GG H GGS
Sbjct: 562 SGSGGGSGG-----GYGGGSGSRGGSGGSHGGGS 590
Score = 27.3 bits (59), Expect = 3.5
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGS 96
G SG G R GSGG GGG G+ GGS
Sbjct: 479 GGSGGSYGRGSRGGSGGSYG-GGGSGGGYGGGS 510
Score = 26.9 bits (58), Expect = 4.6
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGS 96
G G GG G GG + GG G GGS
Sbjct: 567 GSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGS 599
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 59 SIVSSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGS 96
+++ G+ + ++G GG GG RG GGS
Sbjct: 456 NLLEGGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGS 493
Score = 26.2 bits (56), Expect = 7.8
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 64 GESG-SQGGEVRRLGSGGGQNRGGGR 88
GESG S GG GSGGG G G+
Sbjct: 594 GESGGSYGGGEEASGSGGGYGGGSGK 619
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 33.1 bits (74), Expect = 0.064
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 51 RGVRKNPESIVSSG---ESGSQGGEVRRLGSGGGQNRGG-GRDRGHEGGSPRVK 100
R + PES SG E S+GG +RR G G + GG RG GG+P ++
Sbjct: 606 RPEERAPESKSGSGSESEPSSRGGSLRRGGEASGTSDGGPPPSRGSTGGAPNLR 659
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo
sapiens]
Length = 1343
Score = 32.3 bits (72), Expect = 0.11
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 66 SGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRVKL 101
SG GG +GSGGG GGG +GG P V+L
Sbjct: 371 SGGSGG----MGSGGGGGSGGGSGGKGKGGCPAVRL 402
>gi|24430190 keratin 15 [Homo sapiens]
Length = 456
Score = 32.0 bits (71), Expect = 0.14
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 51 RGVRKNPESIVSSGESGSQGGEVRRLGSGGGQNR--GGGRDRGHEGG 95
R + + VSSG G GG +R G GGG GGG G GG
Sbjct: 42 RSISASSARFVSSGSGGGYGGGMRVCGFGGGAGSVFGGGFGGGVGGG 88
>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
Length = 238
Score = 31.2 bits (69), Expect = 0.24
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 27 SQIPRRLHSTKHLRTLPLFHSVLPRGVRKNPESIVSSGESGSQGGEVRRLGSGGGQN--- 83
+++P R + H R+L V G+ ++P ++S GE+G+ RLG+ G +
Sbjct: 66 AELPER--AAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPP 123
Query: 84 -----RGGGRDRGHEG---GSPRV 99
G R G G GSP V
Sbjct: 124 GEEGRAGAWRSPGEAGAADGSPHV 147
>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
sapiens]
Length = 238
Score = 31.2 bits (69), Expect = 0.24
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 27 SQIPRRLHSTKHLRTLPLFHSVLPRGVRKNPESIVSSGESGSQGGEVRRLGSGGGQN--- 83
+++P R + H R+L V G+ ++P ++S GE+G+ RLG+ G +
Sbjct: 66 AELPER--AAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPP 123
Query: 84 -----RGGGRDRGHEG---GSPRV 99
G R G G GSP V
Sbjct: 124 GEEGRAGAWRSPGEAGAADGSPHV 147
>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
sapiens]
Length = 238
Score = 31.2 bits (69), Expect = 0.24
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 27 SQIPRRLHSTKHLRTLPLFHSVLPRGVRKNPESIVSSGESGSQGGEVRRLGSGGGQN--- 83
+++P R + H R+L V G+ ++P ++S GE+G+ RLG+ G +
Sbjct: 66 AELPER--AAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAPRAARLGAPRGASPPP 123
Query: 84 -----RGGGRDRGHEG---GSPRV 99
G R G G GSP V
Sbjct: 124 GEEGRAGAWRSPGEAGAADGSPHV 147
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 30.8 bits (68), Expect = 0.32
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 15 KISTRTSKRWYHSQIPRRLHSTKHLRTLPLFHSV----LPRGVRKNPESIVSSGESGSQG 70
+IS R KRW + ++ + L L H RK P+ S+ S SQ
Sbjct: 78 EISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPRKKPKMDPSAKPSASQS 137
Query: 71 GEVRRLGSGGGQNRGGGRDRGHEGGSPR 98
E G GGG GG GS +
Sbjct: 138 PEKSAAGGGGGSAGGGAGGAKTSKGSSK 165
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 30.8 bits (68), Expect = 0.32
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 54 RKNPESIVSSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPR 98
+ NP+ G+ G GG G GGG + GGG G GGS R
Sbjct: 216 KANPDG-KKKGDGGGAGG-----GGGGGGSGGGGSGGGGGGGSSR 254
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 30.8 bits (68), Expect = 0.32
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 54 RKNPESIVSSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPR 98
+ NP+ G+ G GG G GGG + GGG G GGS R
Sbjct: 200 KANPDG-KKKGDGGGAGG-----GGGGGGSGGGGSGGGGGGGSSR 238
>gi|131412228 keratin 13 isoform b [Homo sapiens]
Length = 420
Score = 30.4 bits (67), Expect = 0.41
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 51 RGVRKNPESIVSSGESGSQGGEVR-----RLGSGGGQNRGGGRDRGHEGG 95
RGV VS G +G GG V GSG G GGG G+ GG
Sbjct: 27 RGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGGYGGG 76
>gi|131412225 keratin 13 isoform a [Homo sapiens]
Length = 458
Score = 30.4 bits (67), Expect = 0.41
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 51 RGVRKNPESIVSSGESGSQGGEVR-----RLGSGGGQNRGGGRDRGHEGG 95
RGV VS G +G GG V GSG G GGG G+ GG
Sbjct: 27 RGVSTCSTRFVSGGSAGGYGGGVSCGFGGGAGSGFGGGYGGGLGGGYGGG 76
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 30.4 bits (67), Expect = 0.41
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 50 PRGVRKNPESIVSSGESGSQGGEVRRLGSGGG----QNRGGGRDRGHEGGSPR 98
P G + P G G +GG R G GGG + GGG RG GG R
Sbjct: 161 PPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFR 213
Score = 29.3 bits (64), Expect = 0.92
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGGR---DRGHEGGSP-RVKLL 102
G G GG R G GG RGGGR ++G + G P RV LL
Sbjct: 31 GGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPPERVVLL 73
Score = 27.3 bits (59), Expect = 3.5
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 63 SGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGG 95
S G +GG R G GGG NRGG + GG
Sbjct: 2 SFRGGGRGG-FNRGGGGGGFNRGGSSNHFRGGG 33
Score = 26.9 bits (58), Expect = 4.6
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 64 GESGSQGGEVR--RLGSGGG--QNRGGG-RDRGH 92
G G +GG R R G GGG RGGG R RGH
Sbjct: 184 GRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH 217
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 30.4 bits (67), Expect = 0.41
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 50 PRGVRKNPESIVSSGESGSQGGEVRRLGSGGG----QNRGGGRDRGHEGGSPR 98
P G + P G G +GG R G GGG + GGG RG GG R
Sbjct: 161 PPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFR 213
Score = 29.3 bits (64), Expect = 0.92
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGGR---DRGHEGGSP-RVKLL 102
G G GG R G GG RGGGR ++G + G P RV LL
Sbjct: 31 GGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPPERVVLL 73
Score = 27.3 bits (59), Expect = 3.5
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 63 SGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGG 95
S G +GG R G GGG NRGG + GG
Sbjct: 2 SFRGGGRGG-FNRGGGGGGFNRGGSSNHFRGGG 33
Score = 26.9 bits (58), Expect = 4.6
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 64 GESGSQGGEVR--RLGSGGG--QNRGGG-RDRGH 92
G G +GG R R G GGG RGGG R RGH
Sbjct: 184 GRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRGH 217
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 30.0 bits (66), Expect = 0.54
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 64 GESGSQG-GEVRRLGSGGGQNRGGGRDRGHEGGS 96
G G QG G+ GSGGG+N GGG+ G GS
Sbjct: 569 GSGGGQGPGDGH--GSGGGKNSGGGKGSGSGKGS 600
Score = 27.3 bits (59), Expect = 3.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 52 GVRKNPESIVSSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGS 96
G NP+ SG + GSG G+ GGG+ +G S
Sbjct: 469 GEEGNPQGKEDQEGSGGDYMPMNNWGSGNGRGSGGGQGSNGQGSS 513
Score = 26.2 bits (56), Expect = 7.8
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 67 GSQGGEVRRLGSGGGQNRGGGRDRG 91
G+ GG GSGGGQ GGG G
Sbjct: 551 GTAGGH----GSGGGQRPGGGHGSG 571
>gi|30061565 La ribonucleoprotein domain family member 2 isoform 2
[Homo sapiens]
Length = 522
Score = 30.0 bits (66), Expect = 0.54
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 68 SQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRV 99
S+GG +R G G+ RG GR RG G+PR+
Sbjct: 139 SEGGNIRGSFRGRGRGRGRGRGRGR--GNPRL 168
>gi|30061569 La ribonucleoprotein domain family member 2 isoform 3
[Homo sapiens]
Length = 358
Score = 30.0 bits (66), Expect = 0.54
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 68 SQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRV 99
S+GG +R G G+ RG GR RG G+PR+
Sbjct: 139 SEGGNIRGSFRGRGRGRGRGRGRGR--GNPRL 168
>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
[Homo sapiens]
Length = 914
Score = 30.0 bits (66), Expect = 0.54
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 68 SQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRV 99
S+GG +R G G+ RG GR RG G+PR+
Sbjct: 139 SEGGNIRGSFRGRGRGRGRGRGRGR--GNPRL 168
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 30.0 bits (66), Expect = 0.54
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 63 SGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGG 95
SG G+ GG GSGGG GG G GG
Sbjct: 480 SGSGGAGGGSGGGSGSGGGGGGAGGGGGGSSGG 512
Score = 29.3 bits (64), Expect = 0.92
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 62 SSGESGSQGGEVRRLGSGGGQNRGG-GRDRGHEG 94
S G SGS GG G GGG + GG G GH G
Sbjct: 489 SGGGSGSGGGGGGAGGGGGGSSGGGSGTAGGHSG 522
Score = 28.1 bits (61), Expect = 2.1
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 62 SSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGS 96
S G G GG G GGG GGG G GGS
Sbjct: 482 SGGAGGGSGGGSGSGGGGGGAGGGGGGSSG--GGS 514
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 30.0 bits (66), Expect = 0.54
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 62 SSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGG 95
SSG GS GG SGGG + GGG GG
Sbjct: 115 SSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGG 148
>gi|38202255 threonyl-tRNA synthetase [Homo sapiens]
Length = 723
Score = 30.0 bits (66), Expect = 0.54
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 62 SSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEG 94
+S SG GGE + +G+G + + GG+ + EG
Sbjct: 6 ASSPSGKMGGEEKPIGAGEEKQKEGGKKKNKEG 38
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 29.6 bits (65), Expect = 0.71
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRVK 100
G SG+ G V +GSGGG+ GG R G G K
Sbjct: 15 GGSGAAAGVV--VGSGGGRGAGGSRQGGQPGAQRMYK 49
>gi|187828880 calcium channel, alpha 1A subunit isoform 3 [Homo
sapiens]
Length = 2261
Score = 29.6 bits (65), Expect = 0.71
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 64 GESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRVK 100
G SG+ G V +GSGGG+ GG R G G K
Sbjct: 15 GGSGAAAGVV--VGSGGGRGAGGSRQGGQPGAQRMYK 49
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 29.6 bits (65), Expect = 0.71
Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 19/105 (18%)
Query: 15 KISTRTSKRWYHSQIPRRLHSTKHLRTLPLFHSVLPRGVRKNPESIVSSGES-------- 66
+IS R KRW + ++ + L L H + P V SG +
Sbjct: 88 EISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADYPDYKYRPRKKVKSGNANSSSSAAA 147
Query: 67 -----------GSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRVK 100
G GG G GGG + GG G GG K
Sbjct: 148 SSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGGGGGASGGGANSK 192
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 29.6 bits (65), Expect = 0.71
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 62 SSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRVKLLHLTLEL 108
S G GS G G GGG GGG G GG+P L H T EL
Sbjct: 20 SLGHPGSGSGS----GGGGGGGGGGGGSGGGGGGAPG-GLQHETQEL 61
>gi|239753240 PREDICTED: hypothetical protein XP_002345595 [Homo
sapiens]
Length = 180
Score = 29.6 bits (65), Expect = 0.71
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 51 RGVRKNPESIVSSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRVK 100
R +K +S VS+ SGS V S G +GG GS RVK
Sbjct: 48 RSTQKRTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVK 97
>gi|239747803 PREDICTED: hypothetical protein XP_002348320 [Homo
sapiens]
Length = 180
Score = 29.6 bits (65), Expect = 0.71
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 51 RGVRKNPESIVSSGESGSQGGEVRRLGSGGGQNRGGGRDRGHEGGSPRVK 100
R +K +S VS+ SGS V S G +GG GS RVK
Sbjct: 48 RSTQKRTKSPVSAQPSGSTAAHVGLCSSRSGHRKGGRLGTDTHAGSRRVK 97
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,866,342
Number of Sequences: 37866
Number of extensions: 300923
Number of successful extensions: 2970
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 1943
Number of HSP's gapped (non-prelim): 856
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.