Guide to the Human Genome
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Name: LOC100290844 Sequence: fasta or formatted (180aa) NCBI GI: 239747803
Description:

PREDICTED: hypothetical protein XP_002348320

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         19           2
 C cysteine            1.7          3           1
 D aspartate           0.6          1           1
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine             6.7         12           2
 H histidine           2.8          5           1
 I isoleucine          0.6          1           1
 K lysine              3.3          6           1
 L leucine             5.6         10           1
 M methionine          2.2          4           1
 N asparagine          1.1          2           1
 P proline            10.0         18           2
 Q glutamine           3.9          7           1
 R arginine           15.6         28           2
 S serine             17.2         31           3
 T threonine           9.4         17           1
 V valine              5.6         10           2
 W tryptophan          2.2          4           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348320 
LOC100291932          1.000   PREDICTED: hypothetical protein XP_002345595 
LOC100287739          1.000   PREDICTED: hypothetical protein XP_002342280 
SRRM2                 0.065   splicing coactivator subunit SRm300 
CCNL2                 0.056   cyclin L2 isoform A 
LOC100133756          0.041   PREDICTED: hypothetical protein, partial 
CXorf67               0.041   hypothetical protein LOC340602 
FUSIP1                0.041   FUS interacting protein (serine-arginine rich) 1 iso...
LOC100293175          0.038   PREDICTED: hypothetical protein 
LOC100288382          0.038   PREDICTED: hypothetical protein XP_002342213 
SFRS7                 0.038   splicing factor, arginine/serine-rich 7 
TRIOBP                0.038   TRIO and F-actin binding protein isoform 6 
LOC100291458          0.035   PREDICTED: hypothetical protein XP_002347107 
LOC100288099          0.035   PREDICTED: hypothetical protein XP_002342970 
LOC100292133          0.032   PREDICTED: hypothetical protein 
LOC100294354          0.032   PREDICTED: hypothetical protein 
TRA2A                 0.032   transformer-2 alpha 
ZRANB2                0.032   zinc finger protein 265 isoform 1 
ADAMTS5               0.032   ADAM metallopeptidase with thrombospondin type 1 mo...
SFRS6                 0.029   arginine/serine-rich splicing factor 6 
MICALL2               0.029   MICAL-like 2 isoform 1 
PNRC1                 0.029   proline-rich nuclear receptor coactivator 1 
SR140                 0.029   U2-associated SR140 protein 
ZRANB2                0.029   zinc finger protein 265 isoform 2 
COL27A1               0.027   collagen, type XXVII, alpha 1 
SFRS4                 0.027   splicing factor, arginine/serine-rich 4 
LOC100134017          0.027   PREDICTED: hypothetical protein 
MUC12                 0.027   PREDICTED: mucin 12 
LOC100291071          0.027   PREDICTED: hypothetical protein XP_002346951 
LOC100287198          0.027   PREDICTED: hypothetical protein XP_002342815 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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